View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4686_low_4 (Length: 528)

Name: NF4686_low_4
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4686_low_4
NF4686_low_4
[»] chr6 (5 HSPs)
chr6 (338-505)||(26808676-26808843)
chr6 (273-342)||(26809000-26809069)
chr6 (275-326)||(26719466-26719517)
chr6 (112-192)||(26848336-26848415)
chr6 (132-190)||(27667818-27667876)
[»] chr1 (3 HSPs)
chr1 (273-326)||(52684301-52684354)
chr1 (278-340)||(52978437-52978499)
chr1 (276-342)||(2703526-2703592)
[»] chr8 (1 HSPs)
chr8 (273-326)||(36089707-36089760)
[»] chr3 (1 HSPs)
chr3 (273-326)||(33718093-33718146)
[»] chr7 (1 HSPs)
chr7 (273-326)||(18931397-18931450)
[»] chr2 (1 HSPs)
chr2 (114-215)||(17994141-17994244)
[»] scaffold0013 (1 HSPs)
scaffold0013 (291-342)||(13605-13656)


Alignment Details
Target: chr6 (Bit Score: 96; Significance: 8e-47; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 338 - 505
Target Start/End: Complemental strand, 26808843 - 26808676
Alignment:
Q  338 gagaatactccttccttgcacaattaaataactcaaaggacctccatgtttctttccccccgcacaatgggattctcaattgtgcttgttcctcatgata 437  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||   |||||||| ||| |||||||| ||||| ||    
T  26808843 gagaatacttcttccttgcacaattaaataactcaaaggacctccatgtttcttcccccctgcacaagtcgattctcatttgcgcttgttcgtcatgtta 26808744  T
Q  438 cttaaaatttgaactactctctaacaatttaagctcaacatggatcctttcattaattaaaagttctt 505  Q
     || |||||||| ||||||| |||||||||||||||||||||||||| ||||||  |||||| |||||    
T  26808743 gttgaaatttgagctactctttaacaatttaagctcaacatggatccattcattttttaaaaattctt 26808676  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 26809069 - 26809000
Alignment:
Q  273 atggaaaatgggatagttcatcaaagtacatgtgttaactcacctcaacaaaatagagttgcagagagaa 342  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||| | || ||||||||||||    
T  26809069 atggaaaatgggatagttcatcaaagtacatctgttaactcacctcatcaaagtggaattgcagagagaa 26809000  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 26719517 - 26719466
Alignment:
Q  275 ggaaaatgggatagttcatcaaagtacatgtgttaactcacctcaacaaaat 326  Q
    |||| ||||||||||| |||||||||||||||||||||| ||||||||||||    
T  26719517 ggaacatgggatagtttatcaaagtacatgtgttaactctcctcaacaaaat 26719466  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 26848415 - 26848336
Alignment:
Q  112 tgtgcatttaa-attagtagcgaaacattcttctaattttccattagccgtgtggaccagtgacataattattgtacaacct 192  Q
    ||||||||||| ||||||  |||||| | ||||| |||||||  |||||||||||||||||  |||||||||||||| ||||    
T  26848415 tgtgcatttaacattagtcacgaaacctccttctcattttcctctagccgtgtggaccagt--cataattattgtaccacct 26848336  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 27667818 - 27667876
Alignment:
Q  132 gaaacattcttctaattttccattagccgtgtggaccagtgacataattattgtacaac 190  Q
    ||||||| ||||| ||||||| |||||||||||||||| | ||| ||||||||| ||||    
T  27667818 gaaacatccttctcattttcctttagccgtgtggaccattcacacaattattgttcaac 27667876  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 52684354 - 52684301
Alignment:
Q  273 atggaaaatgggatagttcatcaaagtacatgtgttaactcacctcaacaaaat 326  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52684354 atggaaaatgggatagttcatcaaagtacatgtgttaactcaccccaacaaaat 52684301  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 52978499 - 52978437
Alignment:
Q  278 aaatgggatagttcatcaaagtacatgtgttaactcacctcaacaaaatagagttgcagagag 340  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||| || ||||| ||||    
T  52978499 aaatgggatagttcatcaaagtacatgtgttaactcaccccaataaaatggaattgcatagag 52978437  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 276 - 342
Target Start/End: Complemental strand, 2703592 - 2703526
Alignment:
Q  276 gaaaatgggatagttcatcaaagtacatgtgttaactcacctcaacaaaatagagttgcagagagaa 342  Q
    |||||||| || || ||||||||| |||||||||||||||| ||||||||| || ||||||||||||    
T  2703592 gaaaatggaattgtacatcaaagttcatgtgttaactcaccccaacaaaatggaattgcagagagaa 2703526  T

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Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 36089760 - 36089707
Alignment:
Q  273 atggaaaatgggatagttcatcaaagtacatgtgttaactcacctcaacaaaat 326  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  36089760 atggaaaatgagatagttcatcaaagtacatgtgttaactcaccccaacaaaat 36089707  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 273 - 326
Target Start/End: Original strand, 33718093 - 33718146
Alignment:
Q  273 atggaaaatgggatagttcatcaaagtacatgtgttaactcacctcaacaaaat 326  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  33718093 atggaaaatgggatagttcatcaaagtacatgtgttaacttaccccaacaaaat 33718146  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 326
Target Start/End: Original strand, 18931397 - 18931450
Alignment:
Q  273 atggaaaatgggatagttcatcaaagtacatgtgttaactcacctcaacaaaat 326  Q
    |||||||||||||||||||| |||||||||||||||| |||||| |||||||||    
T  18931397 atggaaaatgggatagttcagcaaagtacatgtgttagctcaccccaacaaaat 18931450  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 17994141 - 17994244
Alignment:
Q  114 tgcatttaa-attagtagcgaaacattcttctaattttccattagccgtgtggaccagtgacataattattgtacaacctca-ttttcctcccactgtca 211  Q
    ||||||||| || ||| ||||||| | ||||| ||| |||  ||||||||||||||||| ||| |||||||| || |||||| |||||||||||| ||||    
T  17994141 tgcatttaacatcagtggcgaaacttccttctcattctcctatagccgtgtggaccagtcacacaattattgcactacctcatttttcctcccacagtca 17994240  T
Q  212 cttt 215  Q
    ||||    
T  17994241 cttt 17994244  T

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Target: scaffold0013 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 13605 - 13656
Alignment:
Q  291 catcaaagtacatgtgttaactcacctcaacaaaatagagttgcagagagaa 342  Q
    ||||||||| |||||||||||||||| ||| ||||| || ||||||||||||    
T  13605 catcaaagttcatgtgttaactcaccccaaaaaaatggaattgcagagagaa 13656  T

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