View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4686_low_7 (Length: 484)
Name: NF4686_low_7
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4686_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Original strand, 36867297 - 36867749
Alignment:
| Q |
19 |
aatataggtacctgcagaaatccttgtactcaaagatcaaatcaccctactctataagtacggatcaaactgaggtcactgtccaacttagtgaaaagta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36867297 |
aatataggtacctgcagaaatccttgtactcaaagatcaaatcaccctactctataagtacggatcaaactgaggtcactgtccaacttagtaaaaagta |
36867396 |
T |
|
| Q |
119 |
gacaaaaggaagagagagcttnnnnnnnctgatgtgaattgatggtggactgcatttgctaaccacagattaattgcaaattgtaccaggatttatgtgt |
218 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36867397 |
gacaaaaggaagagagagcttaaaaaaactgatgtgaattgatggtggactgcatttgctaaccacagattaattgcaaattgtaccaggatttatgtgt |
36867496 |
T |
|
| Q |
219 |
ccaatatggttctcaatctgaaaaatatcagttttaggtttcagaatgccgtaagaatcatcaaacaacttcctggacaatagttaactattgtccatta |
318 |
Q |
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| T |
36867497 |
acaatatggttctcaatctgaaaaatatcagttttaggtttcagaatgccgtaagaatcatcaaacaacttcctggacaatagtta----ttgtccatta |
36867592 |
T |
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| Q |
319 |
tcaacagcctattagagtgacatgtcaacatccatagttaatctccattatcaaattttgccaactaatttaacctatagcgttgatatgtcagttttag |
418 |
Q |
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| T |
36867593 |
tcaacagcctattagagtgacatgtcaacatccttagttaatctccattatcaaattttgccaactaatttaacctatagcgttgatatgtcagttttag |
36867692 |
T |
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| Q |
419 |
gttcaaaaaatctcattatgtacccatgcacacctcttcctacaagaattacctttg |
475 |
Q |
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| T |
36867693 |
gttcaaaaaatctcattatgtacccatgcacacctcttcctacaagaattacctttg |
36867749 |
T |
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Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 35025583 - 35025667
Alignment:
| Q |
19 |
aatataggtacctgcagaaatccttgtactcaaagatcaaatcaccctactctataagtacggatcaaactgaggtcactgtccaa |
104 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || ||||| |||||||||||||| |
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| T |
35025583 |
aatataggtacctgcagaaatccttgtactcacagatcaaatcacactactctataagtaacaat-aaactaaggtcactgtccaa |
35025667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 375 - 475
Target Start/End: Complemental strand, 35025128 - 35025028
Alignment:
| Q |
375 |
tttgccaactaatttaacctatagcgttgatatgtcagttttaggttcaaaaaatctcattatgtacccatgcacacctcttcctacaagaattaccttt |
474 |
Q |
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| T |
35025128 |
tttgccaactaatctaacctatagtgccgatacgtcagttttaggttcaaaaaatctctttctatacccatgcacgcatcttcctccaagaatcaccttt |
35025029 |
T |
|
| Q |
475 |
g |
475 |
Q |
| |
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| |
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|
| T |
35025028 |
g |
35025028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 429
Target Start/End: Original strand, 37833283 - 37833393
Alignment:
| Q |
323 |
cagcctattagagtgacatgtcaacatccatagttaa----tctccattatcaaattttgccaactaatttaacctatagcgttgatatgtcagttttag |
418 |
Q |
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||||||||||||||| |||||||| |||||||||||| | | || ||||||||||||| ||||| | ||| | ||| | ||||||||||||||| | |
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| T |
37833283 |
cagcctattagagtgccatgtcaatatccatagttaaccattattcaatatcaaattttgctaactattctaatatttagtgctgatatgtcagttttgg |
37833382 |
T |
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| Q |
419 |
gttcaaaaaat |
429 |
Q |
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||||| |||| |
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|
| T |
37833383 |
attcaacaaat |
37833393 |
T |
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