View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4686_low_8 (Length: 454)

Name: NF4686_low_8
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4686_low_8
NF4686_low_8
[»] chr6 (12 HSPs)
chr6 (285-378)||(1831209-1831304)
chr6 (290-391)||(15603721-15603824)
chr6 (291-380)||(11680417-11680508)
chr6 (285-351)||(1131873-1131939)
chr6 (283-344)||(13758522-13758583)
chr6 (283-326)||(15060267-15060310)
chr6 (285-351)||(22012054-22012121)
chr6 (291-326)||(26817743-26817778)
chr6 (285-327)||(1423078-1423120)
chr6 (285-351)||(18675452-18675518)
chr6 (285-351)||(34043643-34043710)
chr6 (285-351)||(20990538-20990604)
[»] chr2 (10 HSPs)
chr2 (285-402)||(31548801-31548920)
chr2 (285-380)||(25621891-25621987)
chr2 (283-326)||(6883759-6883802)
chr2 (285-326)||(7444046-7444087)
chr2 (96-204)||(31548615-31548723)
chr2 (285-351)||(44322160-44322227)
chr2 (285-351)||(6221485-6221552)
chr2 (285-351)||(33015131-33015198)
chr2 (285-351)||(44313981-44314048)
chr2 (285-351)||(2554155-2554221)
[»] chr4 (9 HSPs)
chr4 (283-380)||(10142585-10142684)
chr4 (287-376)||(13957694-13957785)
chr4 (283-351)||(52460640-52460708)
chr4 (283-340)||(25201776-25201833)
chr4 (283-326)||(3665085-3665128)
chr4 (287-323)||(24611029-24611065)
chr4 (285-351)||(10094960-10095027)
chr4 (289-380)||(42511284-42511377)
chr4 (285-326)||(31915592-31915633)
[»] chr8 (9 HSPs)
chr8 (284-402)||(23231934-23232054)
chr8 (283-376)||(9381777-9381872)
chr8 (283-380)||(11648049-11648148)
chr8 (285-351)||(1981695-1981762)
chr8 (285-351)||(16729829-16729895)
chr8 (283-380)||(602067-602166)
chr8 (285-326)||(7263571-7263612)
chr8 (100-204)||(11647869-11647973)
chr8 (249-285)||(23231934-23231970)
[»] chr7 (10 HSPs)
chr7 (283-380)||(8113441-8113540)
chr7 (293-380)||(43178549-43178638)
chr7 (285-326)||(20394724-20394765)
chr7 (287-380)||(24441602-24441697)
chr7 (285-351)||(8389237-8389304)
chr7 (284-326)||(9420803-9420845)
chr7 (289-351)||(21863958-21864020)
chr7 (283-326)||(3123703-3123746)
chr7 (285-351)||(13754214-13754280)
chr7 (285-326)||(35477916-35477957)
[»] chr3 (7 HSPs)
chr3 (283-380)||(44879887-44879986)
chr3 (283-379)||(47185419-47185517)
chr3 (283-351)||(33100367-33100435)
chr3 (285-343)||(15760966-15761025)
chr3 (285-351)||(19157192-19157259)
chr3 (285-351)||(27941454-27941521)
chr3 (285-351)||(52448242-52448308)
[»] chr1 (12 HSPs)
chr1 (283-380)||(12028198-12028297)
chr1 (283-351)||(9023523-9023591)
chr1 (285-326)||(44310772-44310813)
chr1 (283-327)||(42055752-42055796)
chr1 (285-380)||(48646364-48646465)
chr1 (285-318)||(23664046-23664079)
chr1 (285-325)||(5208382-5208422)
chr1 (285-351)||(21906478-21906545)
chr1 (285-351)||(34307384-34307451)
chr1 (285-351)||(48596290-48596357)
chr1 (248-285)||(42055752-42055789)
chr1 (286-318)||(25095299-25095331)
[»] chr5 (17 HSPs)
chr5 (283-351)||(13820548-13820616)
chr5 (283-378)||(43170958-43171055)
chr5 (287-326)||(29789921-29789960)
chr5 (283-326)||(37135209-37135252)
chr5 (285-351)||(5578547-5578613)
chr5 (287-402)||(8805959-8806076)
chr5 (285-327)||(26402397-26402439)
chr5 (285-326)||(5120439-5120480)
chr5 (285-326)||(39537338-39537379)
chr5 (287-351)||(29150696-29150760)
chr5 (283-326)||(16686673-16686716)
chr5 (285-351)||(23962949-23963016)
chr5 (285-351)||(13490489-13490555)
chr5 (248-285)||(13820548-13820585)
chr5 (100-204)||(6769112-6769216)
chr5 (283-327)||(13825893-13825937)
chr5 (285-321)||(20891066-20891102)
[»] scaffold1266 (1 HSPs)
scaffold1266 (283-351)||(1672-1740)
[»] scaffold0385 (1 HSPs)
scaffold0385 (283-380)||(1036-1135)
[»] scaffold0263 (1 HSPs)
scaffold0263 (283-351)||(18278-18346)
[»] scaffold0116 (1 HSPs)
scaffold0116 (283-314)||(41108-41139)
[»] scaffold1364 (1 HSPs)
scaffold1364 (283-327)||(1230-1274)


Alignment Details
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 285 - 378
Target Start/End: Complemental strand, 1831304 - 1831209
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaa 378  Q
    ||||||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||| |||||   || |||||||||||||||||||||||    
T  1831304 acaccaaaacaaaataaaataccgcagaagtagagaacaataacatctgcgaagtagactgaaattttagcatctaagaataataacaccaaaaaa 1831209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 290 - 391
Target Start/End: Original strand, 15603721 - 15603824
Alignment:
Q  290 aaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattta--cacctaagaataataacaccaaaaaagtttacatt 387  Q
    |||||||||||||||||| ||||||||||||||||||  | |||  ||||| | || |||||   |||||||||||||||||||||||||| ||||||||    
T  15603721 aaaacaaaataaaatatcatagaagtagagaacaatagcacctgcaaagtaaattgaaattttagcacctaagaataataacaccaaaaaactttacatt 15603820  T
Q  388 acta 391  Q
    ||||    
T  15603821 acta 15603824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 380
Target Start/End: Original strand, 11680417 - 11680508
Alignment:
Q  291 aaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgca--atttacacctaagaataataacaccaaaaaagt 380  Q
    |||||||||||||||||||||||||| |||||||||  |  || |||||| |||| |  ||| |||||||||||||||||||||||||||||    
T  11680417 aaacaaaataaaatatcgtagaagtatagaacaatagcacatgcgaagtatactgaaatattaacacctaagaataataacaccaaaaaagt 11680508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 1131939 - 1131873
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||  ||||||||||| || |||||    
T  1131939 acaccaaaacaaaataaaatatcgtagaagtagagaaaaatagtacatgtgaagtagattgaaattt 1131873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 344
Target Start/End: Original strand, 13758522 - 13758583
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagact 344  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||  |  |||||||||||||    
T  13758522 agacaccaaaacagaataaaataccgtagaagtagagaacaatagcacatgtgaagtagact 13758583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 15060310 - 15060267
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 326  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  15060310 agacaccaaaacaaaataaaataccatagaagtagagaacaata 15060267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 22012054 - 22012121
Alignment:
Q  285 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  || |||||||||||||| |||||    
T  22012054 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcatatgtgaagtagactgaaattt 22012121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 326
Target Start/End: Complemental strand, 26817778 - 26817743
Alignment:
Q  291 aaacaaaataaaatatcgtagaagtagagaacaata 326  Q
    ||||||||||||||||||||||||||||||||||||    
T  26817778 aaacaaaataaaatatcgtagaagtagagaacaata 26817743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 1423120 - 1423078
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaataa 327  Q
    ||||||||||||||||||||||||||| ||||||||| |||||    
T  1423120 acaccaaaacaaaataaaatatcgtaggagtagagaaaaataa 1423078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 18675518 - 18675452
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    |||||||||||||||||||||||| || ||||||||| ||||| |  || ||||||||||| |||||    
T  18675518 acaccaaaacaaaataaaatatcgcaggagtagagaaaaataacacatgcgaagtagactgaaattt 18675452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 34043710 - 34043643
Alignment:
Q  285 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  34043710 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 34043643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 20990604 - 20990538
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||| |||||||||| |||||||||| ||||  |  || ||||||||||| |||||    
T  20990604 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaattt 20990538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 285 - 402
Target Start/End: Original strand, 31548801 - 31548920
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagttt 382  Q
    ||||||||||||||||||||||| ||||||||||||||||||  |  || ||||||||||| |||||   |||| |||||||||||||| |||||||||     
T  31548801 acaccaaaacaaaataaaatatcatagaagtagagaacaatagcacttgcgaagtagactgaaattttaccaccaaagaataataacacaaaaaaagttg 31548900  T
Q  383 acattactaaacgcgtctca 402  Q
    |||||||||||  |||||||    
T  31548901 acattactaaattcgtctca 31548920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 380
Target Start/End: Complemental strand, 25621987 - 25621891
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaatttac--acctaagaataataacaccaaaaaagt 380  Q
    |||||||||||||||||||||||||| ||||| |||||||||||   |||||||||||||| |||||    || |||||||||||||||||| |||||    
T  25621987 acaccaaaacaaaataaaatatcgtaaaagtatagaacaataatca-tgtgaagtagactgaaattttagaacttaagaataataacaccaacaaagt 25621891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 6883802 - 6883759
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 326  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  6883802 agacaccaaaacaaaataagatatcgtagaagtagagaacaata 6883759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 7444087 - 7444046
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 326  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  7444087 acaccaaaacaaaataaaatatcgtagaagtagagaaaaata 7444046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 31548615 - 31548723
Alignment:
Q  96 gtttctagagttttacatgtcttaaacataatatgataaaagagtctcttgcataatacatcttaaatttcataagctcattgttttgattttgttaggt 195  Q
    ||||||||||||||||| |||||| || |||||||| ||||| ||| ||| ||||||||||   ||| ||  | || |||||||| | ||||| ||||||    
T  31548615 gtttctagagttttacaggtcttagacttaatatgagaaaagggtcccttacataatacataacaaacttttttagttcattgttgttattttattaggt 31548714  T
Q  196 cttcatttc 204  Q
    |||||||||    
T  31548715 cttcatttc 31548723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 44322160 - 44322227
Alignment:
Q  285 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  || |||||||||||||| |||||    
T  44322160 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcatatgtgaagtagactgaaattt 44322227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 6221552 - 6221485
Alignment:
Q  285 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  6221552 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 6221485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 33015131 - 33015198
Alignment:
Q  285 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  33015131 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 33015198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 44313981 - 44314048
Alignment:
Q  285 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  44313981 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcaaatgtgaagtagactgaaattt 44314048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 2554221 - 2554155
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||| ||||||| || |||||||||| ||||  |  |||||||||||||| |||||    
T  2554221 acaccaaaacaaaatgaaatatcctacaagtagagaaaaatagcacatgtgaagtagactgaaattt 2554155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 380
Target Start/End: Complemental strand, 10142684 - 10142585
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 380  Q
    |||||||||||||||||||||| ||||||||||| |||||||||  |  |||||||||||||| |||||   ||||| ||||||||||||||||||||||    
T  10142684 agacaccaaaacaaaataaaatgtcgtagaagtatagaacaatagcacatgtgaagtagactgaaattttagcacctgagaataataacaccaaaaaagt 10142585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 376
Target Start/End: Complemental strand, 13957785 - 13957694
Alignment:
Q  287 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaa 376  Q
    |||||||||||||||||||||||||||||| |||||||||  |  ||  |||||||||| |||||   |||||||||||||||| |||||||    
T  13957785 accaaaacaaaataaaatatcgtagaagtatagaacaatagcacgtgcaaagtagactgaaatttgagcacctaagaataataataccaaaa 13957694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 52460708 - 52460640
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||| |  || ||||||||||| |||||    
T  52460708 agacaccgaaacaaaataaaataccgtagaagtagagaacaataacacatgcgaagtagactgaaattt 52460640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 340
Target Start/End: Complemental strand, 25201833 - 25201776
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagta 340  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||| || |||||||    
T  25201833 agacaccaacacaagataaaataccgtagaagtagagaacaataatacctttgaagta 25201776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 326
Target Start/End: Original strand, 3665085 - 3665128
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 326  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  3665085 agacaccaaaacaaaataaaataccatagaagtagagaacaata 3665128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 24611029 - 24611065
Alignment:
Q  287 accaaaacaaaataaaatatcgtagaagtagagaaca 323  Q
    ||||||||||||||||||| |||||||||||||||||    
T  24611029 accaaaacaaaataaaataccgtagaagtagagaaca 24611065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 10094960 - 10095027
Alignment:
Q  285 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  10094960 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 10095027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 380
Target Start/End: Original strand, 42511284 - 42511377
Alignment:
Q  289 caaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 380  Q
    ||||||| |||||||||||||||||||| |||||||||  |   |  |||||||||| |||||   ||||||| |||| |||||||||||||||    
T  42511284 caaaacataataaaatatcgtagaagtatagaacaatagcacacgcaaagtagactgaaattttagcacctaaaaatattaacaccaaaaaagt 42511377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 31915633 - 31915592
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 326  Q
    ||||||||||||||||||||| | |||||||||| |||||||    
T  31915633 acaccaaaacaaaataaaataccatagaagtagacaacaata 31915592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 402
Target Start/End: Original strand, 23231934 - 23232054
Alignment:
Q  284 gacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagtt 381  Q
    |||||||||| ||||||||||| ||||||||||||||||||||| | ||  |||||| |||| |||||    |||||||||||||||||| ||||| |||    
T  23231934 gacaccaaaataaaataaaataccgtagaagtagagaacaataacacctacgaagtatactgaaattttagtacctaagaataataacacaaaaaaggtt 23232033  T
Q  382 tacattactaaacgcgtctca 402  Q
     ||||||||||| | ||||||    
T  23232034 gacattactaaatgtgtctca 23232054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 376
Target Start/End: Original strand, 9381777 - 9381872
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaa 376  Q
    |||||||||||||||||||| ||||||||||||| |||||||||  |  || ||||||||||| |||||   ||||||||||||||||||| ||||    
T  9381777 agacaccaaaacaaaataaagtatcgtagaagtatagaacaatagcacatgcgaagtagactgaaattttagcacctaagaataataacacaaaaa 9381872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 380
Target Start/End: Original strand, 11648049 - 11648148
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattta--cacctaagaataataacaccaaaaaagt 380  Q
    |||||| ||||||||||||||||   || |||||| ||||||||| |  || ||||||||||| |||||   ||||||||||||||||||||||||||||    
T  11648049 agacacaaaaacaaaataaaatactataaaagtagtgaacaataacacatgcgaagtagactgaaattttagcacctaagaataataacaccaaaaaagt 11648148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 1981762 - 1981695
Alignment:
Q  285 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||| |||||||||||||||||| ||||  || |||||||||||||| |||||    
T  1981762 acaccaaaacaaaataaaaatatcgtagaagtagagaaaaatagcatatgtgaagtagactgaaattt 1981695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 16729895 - 16729829
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |  || ||||||||||| |||||    
T  16729895 acaccaaaacaaaataaaatatcgtagaagtagagaaaaatagcacatgcgaagtagactgaaattt 16729829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 380
Target Start/End: Original strand, 602067 - 602166
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 380  Q
    ||||| |||||||||||||||||| || ||||||||||||||||  ||||   |||||  ||  |||||   || |||||||||||||||||||||||||    
T  602067 agacaacaaaacaaaataaaatattgttgaagtagagaacaatagcatctacaaagtaagcttaaattttagcaactaagaataataacaccaaaaaagt 602166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 7263571 - 7263612
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 326  Q
    ||||||||||||||| |||||||||| |||||||||| ||||    
T  7263571 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaata 7263612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 11647869 - 11647973
Alignment:
Q  100 ctagagttttacatgtcttaaacataatatgataaaagagtctcttgcataatacatcttaaatttcataagctcattgttttgattttgttaggtcttc 199  Q
    |||||||||||||   |||| ||||||||||| ||||||| | ||  ||||||||||| ||||    || || ||| |||| ||||||| ||||||||||    
T  11647869 ctagagttttacagaccttagacataatatgagaaaagagcccctaacataatacatcataaaaaaaattagttcactgttatgattttattaggtcttc 11647968  T
Q  200 atttc 204  Q
    |||||    
T  11647969 atttc 11647973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 23231934 - 23231970
Alignment:
Q  249 gacaccaaaagaaaataaaataccgtagaagttgaga 285  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  23231934 gacaccaaaataaaataaaataccgtagaagtagaga 23231970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 283 - 380
Target Start/End: Original strand, 8113441 - 8113540
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 380  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| |  || |||||| |||| |||||   ||||||||||||||||||| ||||||||    
T  8113441 agacaccaaaacaaaataaaatattgtagaagtatagaacaataacacatgcgaagtacactgaaattttagcacctaagaataataacacaaaaaaagt 8113540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 293 - 380
Target Start/End: Original strand, 43178549 - 43178638
Alignment:
Q  293 acaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 380  Q
    ||||||||||||||||||| |||| |||||||||  | || ||||||| ||| ||||||  ||||||||||| |||||||||||||||||    
T  43178549 acaaaataaaatatcgtaggagtaaagaacaatagcacctatgaagtaaactacaattttaacacctaagaacaataacaccaaaaaagt 43178638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 20394724 - 20394765
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 326  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  20394724 acaccaaaacaaaataaaatatcgtagaagtagagaaaaata 20394765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 380
Target Start/End: Original strand, 24441602 - 24441697
Alignment:
Q  287 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 380  Q
    ||||||| | ||||||||||| |||||||| |||||||||  |  ||| |||||||||| ||| |  ||||||||||||||||||| |||||||||    
T  24441602 accaaaatagaataaaatatcatagaagtatagaacaatagcacatgtaaagtagactgaaatattaacacctaagaataataacagcaaaaaagt 24441697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 8389237 - 8389304
Alignment:
Q  285 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||| || ||||||||||||||| ||||| |  |||||||||||||| |||||    
T  8389237 acaccaaaacaaaataaaaataccgtagaagtagagaaaaataacacatgtgaagtagactgaaattt 8389304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 9420845 - 9420803
Alignment:
Q  284 gacaccaaaacaaaataaaatatcgtagaagtagagaacaata 326  Q
    |||||||| ||| ||||||||||||||||||||||||||||||    
T  9420845 gacaccaacacataataaaatatcgtagaagtagagaacaata 9420803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 351
Target Start/End: Complemental strand, 21864020 - 21863958
Alignment:
Q  289 caaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||| ||||||||||||||||||||  | ||| |||||||| || |||||    
T  21864020 caaaacaaaataaaataccgtagaagtagagaacaatagcacctgcgaagtagagtgaaattt 21863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 326
Target Start/End: Original strand, 3123703 - 3123746
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 326  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||    
T  3123703 agacaccaaaacaaaataaaataccgtagaaatagataacaata 3123746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 13754280 - 13754214
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||| |||||||||| |||||||||| ||||  |  || ||||||||||| |||||    
T  13754280 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaattt 13754214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 35477916 - 35477957
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 326  Q
    ||||||||||||||| |||||||||| |||||||||| ||||    
T  35477916 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaata 35477957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 283 - 380
Target Start/End: Complemental strand, 44879986 - 44879887
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 380  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| |  || ||||||||||  |||||   ||||||||||||||||||||||| ||||    
T  44879986 agacaccaaaacaaaataaaatattgtagaagtatagaacaataacacatgcgaagtagactaaaattttagcacctaagaataataacaccaaacaagt 44879887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 379
Target Start/End: Complemental strand, 47185517 - 47185419
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaag 379  Q
    ||||| |||||||| |||||||||||||||| || |||||||||  |  |||||||||||||| |||||  |||||||||||||||||||||| |||||    
T  47185517 agacatcaaaacaacataaaatatcgtagaaatatagaacaatagcaaatgtgaagtagactgaaattttgacacctaagaataataacaccagaaaag 47185419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 351
Target Start/End: Original strand, 33100367 - 33100435
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||||||  | ||||| ||||||||||||| |  || ||||||||||| |||||    
T  33100367 agacaccaaaacaaaataaaatgccttagaaatagagaacaataacacatgcgaagtagactgaaattt 33100435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 343
Target Start/End: Complemental strand, 15761025 - 15760966
Alignment:
Q  285 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagac 343  Q
    ||||||||||||||||||| || ||||||||||||||| ||||| |  ||||||||||||    
T  15761025 acaccaaaacaaaataaaaataccgtagaagtagagaaaaataacacatgtgaagtagac 15760966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 19157259 - 19157192
Alignment:
Q  285 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  19157259 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 19157192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 27941454 - 27941521
Alignment:
Q  285 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  27941454 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 27941521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 52448308 - 52448242
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||| |||||||||| |||||||||| ||||  |  || ||||||||||| |||||    
T  52448308 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaattt 52448242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 283 - 380
Target Start/End: Complemental strand, 12028297 - 12028198
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 380  Q
    |||||| |||||||||||||||||| |||||||| ||||||| || |  |||||||||||||| |||||   ||||||| ||||||||||||||||||||    
T  12028297 agacacaaaaacaaaataaaatatcctagaagtatagaacaacaacacatgtgaagtagactgaaattttagcacctaaaaataataacaccaaaaaagt 12028198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 9023591 - 9023523
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  || |||||| |||| |||||    
T  9023591 agacaccaaaacaaaataaaatatcgtaaaagtagagaacaataatacatgcgaagtatactgaaattt 9023523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 44310813 - 44310772
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 326  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44310813 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 44310772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 42055752 - 42055796
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataa 327  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  42055752 agacaccaaaacaaaataaaataccgtagaagtagagaacaataa 42055796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 380
Target Start/End: Complemental strand, 48646465 - 48646364
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaaca--ataata---tctgtgaagtagactgcaattta-cacctaagaataataacaccaaaaaa 378  Q
    ||||||| |||||||||||||||||||||||| ||||||  ||||||   | || ||| ||||||  | |||| ||||||||||||||||||||||||||    
T  48646465 acaccaacacaaaataaaatatcgtagaagtatagaacaatataatagattatgcgaaatagactaaattttagcacctaagaataataacaccaaaaaa 48646366  T
Q  379 gt 380  Q
    ||    
T  48646365 gt 48646364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 285 - 318
Target Start/End: Original strand, 23664046 - 23664079
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtaga 318  Q
    ||||||||||||||||||||||||||||||||||    
T  23664046 acaccaaaacaaaataaaatatcgtagaagtaga 23664079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 5208382 - 5208422
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaat 325  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  5208382 acaccaaaataaaataaaatatcgtagaagtatagaacaat 5208422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 21906545 - 21906478
Alignment:
Q  285 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  21906545 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 21906478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 34307384 - 34307451
Alignment:
Q  285 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||| |||||||||||||||||| ||||  |  ||||||||||| || |||||    
T  34307384 acaccaaaacaaaataaaaatatcgtagaagtagagaaaaatagcacatgtgaagtagaatgaaattt 34307451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 48596290 - 48596357
Alignment:
Q  285 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  48596290 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 48596357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 42055752 - 42055789
Alignment:
Q  248 agacaccaaaagaaaataaaataccgtagaagttgaga 285  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  42055752 agacaccaaaacaaaataaaataccgtagaagtagaga 42055789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 318
Target Start/End: Complemental strand, 25095331 - 25095299
Alignment:
Q  286 caccaaaacaaaataaaatatcgtagaagtaga 318  Q
    ||||||||||||||||||||||||| |||||||    
T  25095331 caccaaaacaaaataaaatatcgtaaaagtaga 25095299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 351
Target Start/End: Original strand, 13820548 - 13820616
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||||||| |||||||||||||||||| || |  |||||||||||||| |||||    
T  13820548 agacaccaaaacaaaataaaataccgtagaagtagagaacaacaacacatgtgaagtagactgaaattt 13820616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 378
Target Start/End: Original strand, 43170958 - 43171055
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaa 378  Q
    |||||||||||||||||||||||||||||||| |  ||||||||  |  || ||||||||||| |||||   ||||||||||||||||||| ||||||    
T  43170958 agacaccaaaacaaaataaaatatcgtagaagcatggaacaatagcacatgcgaagtagactgtaattttagcacctaagaataataacacgaaaaaa 43171055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 326
Target Start/End: Complemental strand, 29789960 - 29789921
Alignment:
Q  287 accaaaacaaaataaaatatcgtagaagtagagaacaata 326  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  29789960 accaaaacaaaataaaatatcgtagaagtatagaacaata 29789921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 37135252 - 37135209
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 326  Q
    |||||||||||||| |||||||||| ||||||||||||||||||    
T  37135252 agacaccaaaacaacataaaatatcttagaagtagagaacaata 37135209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 5578547 - 5578613
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    |||||||||||||||||||||||||| |||||||||| ||||  || ||  |||||||||| |||||    
T  5578547 acaccaaaacaaaataaaatatcgtaaaagtagagaaaaatagcatatgcaaagtagactgaaattt 5578613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 402
Target Start/End: Original strand, 8805959 - 8806076
Alignment:
Q  287 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattta--cacctaagaataataacaccaaaaaagtttac 384  Q
    ||||||||||||||||||| |||||||||||| |||||||  | ||   |  || |||| | |||   ||||||||| ||||||||| ||||||||| ||    
T  8805959 accaaaacaaaataaaataccgtagaagtagataacaatagcaccttcaacatatactgaagttttagcacctaagagtaataacacaaaaaaagttgac 8806058  T
Q  385 attactaaacgcgtctca 402  Q
    ||||||||| ||||||||    
T  8806059 attactaaatgcgtctca 8806076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 26402439 - 26402397
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaataa 327  Q
    ||||||||||||||||||||| ||||||||||| |||||||||    
T  26402439 acaccaaaacaaaataaaataccgtagaagtagcgaacaataa 26402397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 5120439 - 5120480
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 326  Q
    ||||||||||||||||||||| |||||||||| |||||||||    
T  5120439 acaccaaaacaaaataaaataccgtagaagtatagaacaata 5120480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 39537338 - 39537379
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 326  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  39537338 acaccaaaacaaaataaaatatcttagaagtagagaaaaata 39537379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 351
Target Start/End: Complemental strand, 29150760 - 29150696
Alignment:
Q  287 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||| |||| ||||||||| |||||| |  || ||||||||||| |||||    
T  29150760 accaaaacaaaataaaataccgtaaaagtagagagcaataacacttgcgaagtagactgaaattt 29150696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 326
Target Start/End: Original strand, 16686673 - 16686716
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 326  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||    
T  16686673 agacaccaaaacaaaataaaataccgtataagtatagaacaata 16686716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 23963016 - 23962949
Alignment:
Q  285 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  23963016 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 23962949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 13490555 - 13490489
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    |||||||||||||||||||| ||||||||||| |||| ||||  |  || ||||||||||| |||||    
T  13490555 acaccaaaacaaaataaaatgtcgtagaagtatagaaaaatagcacatgcgaagtagactgaaattt 13490489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 13820548 - 13820585
Alignment:
Q  248 agacaccaaaagaaaataaaataccgtagaagttgaga 285  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  13820548 agacaccaaaacaaaataaaataccgtagaagtagaga 13820585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 6769112 - 6769216
Alignment:
Q  100 ctagagttttacatgtcttaaacataatatgataaaagagtctcttgcataatacatcttaaatttcataagctcattgttttgattttgttaggtcttc 199  Q
    ||||||||||||| | ||||| |||||||||| |||||   | |||  |||||||||| ||| |||  | ||||||||||| ||||||| | ||||||||    
T  6769112 ctagagttttacaggccttaagcataatatgagaaaaggtccccttagataatacatcataattttttttagctcattgttgtgattttatcaggtcttc 6769211  T
Q  200 atttc 204  Q
     ||||    
T  6769212 ttttc 6769216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 13825893 - 13825937
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataa 327  Q
    |||||| ||||||||| |||||| |||| ||||||||||||||||    
T  13825893 agacacaaaaacaaaacaaaataccgtaaaagtagagaacaataa 13825937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 20891066 - 20891102
Alignment:
Q  285 acaccaaaacaaaataaaatatcgtagaagtagagaa 321  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  20891066 acaccaaaacaaaataaaatattgtagaagtaaagaa 20891102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 1740 - 1672
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||| |  | |||||||||||| |||||    
T  1740 agacagcaaaccaaaataaaataccgtagaagtagagaacaataacacttatgaagtagactgaaattt 1672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 380
Target Start/End: Complemental strand, 1135 - 1036
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 380  Q
    ||||||||||||||||||||||||| ||||| || |||||||||  |  ||  |||||||||  |||||  | ||||||||||||||||||| |||||||    
T  1135 agacaccaaaacaaaataaaatatcatagaaatatagaacaatagcacatgcaaagtagactaaaattttaaaacctaagaataataacacccaaaaagt 1036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 351
Target Start/End: Original strand, 18278 - 18346
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 351  Q
    ||||| |||| |||||||||||| | ||||||||||||||||||| |  | |||||||||||| |||||    
T  18278 agacagcaaaccaaaataaaataccatagaagtagagaacaataacacttatgaagtagactgaaattt 18346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 314
Target Start/End: Complemental strand, 41139 - 41108
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaag 314  Q
    ||||||||||||||||||||||||||||||||    
T  41139 agacaccaaaacaaaataaaatatcgtagaag 41108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1364 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1364
Description:

Target: scaffold1364; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 1274 - 1230
Alignment:
Q  283 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataa 327  Q
    ||||| |||| |||||||||||| |||||||||||| ||||||||    
T  1274 agacatcaaaccaaaataaaataccgtagaagtagaaaacaataa 1230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University