View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4686_low_9 (Length: 448)

Name: NF4686_low_9
Description: NF4686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4686_low_9
NF4686_low_9
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-430)||(74581-75010)
[»] chr3 (1 HSPs)
chr3 (1-428)||(618295-618731)
[»] chr6 (10 HSPs)
chr6 (23-430)||(29471394-29471801)
chr6 (23-430)||(29663014-29663429)
chr6 (23-430)||(28487759-28488160)
chr6 (23-430)||(29800171-29800572)
chr6 (23-430)||(29767448-29767851)
chr6 (1-428)||(29718630-29719057)
chr6 (23-430)||(29689469-29689869)
chr6 (95-428)||(29756007-29756339)
chr6 (95-332)||(29712088-29712319)
chr6 (1-329)||(29671558-29671884)
[»] chr8 (1 HSPs)
chr8 (26-430)||(12591828-12592233)
[»] scaffold0012 (2 HSPs)
scaffold0012 (134-428)||(209615-209907)
scaffold0012 (1-137)||(208924-209060)
[»] chr1 (1 HSPs)
chr1 (198-347)||(5918746-5918895)


Alignment Details
Target: scaffold0007 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 75010 - 74581
Alignment:
Q  1 ggcaggaaatttatttctaaagcagaaagaaattgacaatcctcccgagcattggtggtcgaaccactctggagtctttactcgtggcatccggaaccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75010 ggcaggaaatttatttctaaagcagaaagaaattgacaatcctcccgagcattggtggtcgaaccactctggagtctttactcgtggcatccggaaccaa 74911  T
Q  101 gtgtttcctgcttcatgtgattcctgttaatcataaataattaatgtaagtttaaatatatcaagaagaatatcaattatcatatcaaatacattacaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  74910 gtgtttcctgcttcatgtgattcctgttaatcataaataattaatgtaagtttaaatatatcaagaagaatatcaattatcatatcaaatacattacaaa 74811  T
Q  201 ataaatcacaacctgatttagtaattttcttttgcacgacgaagtcaatgatttgcagtttattgcagataaagtttttaagcatggaggaatcccttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  74810 ataaatcacaacctgatttagtaattttcttttgcacgacgaagtcaatgatttgcagtttattgcagataaagtttttaagcatggaggaatcccttca 74711  T
Q  301 atttcccgaatttcctcacaatcatccaagacaagcctccataaaaaattacatttctcgatagatttaggaagaactgtgaattgattttcagttaggt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  74710 atttcccgaatttcctcacaatcatccaagacaagcctccataaaaaattacatttctcaatagatttaggaagaactgtgaattgattttcagttaggt 74611  T
Q  401 gtaattcttttacattagcaaacaacatga 430  Q
    ||||||||||||||||||||||||||||||    
T  74610 gtaattcttttacattagcaaacaacatga 74581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 618731 - 618295
Alignment:
Q  1 ggcaggaaatttatttctaaagcagaaagaaattgacaatcctcccgagcattggtggtcgaaccactctggagtctttactcgtggcatccggaaccaa 100  Q
    ||||||||| || || | ||| ||||||||||||||||||||| || | |||||||| | ||||||||||||| | ||  || ||||||   ||||||||    
T  618731 ggcaggaaacttgttacgaaaccagaaagaaattgacaatcctgccaaacattggtgattgaaccactctggaattttcgcttgtggcaaatggaaccaa 618632  T
Q  101 gtgtttcctgcttcatgtgattcctgttaatcataaataattaatgtaag---tttaaatatatcaagaagaatatcaattatcatatcaaatacattac 197  Q
    || ||||| || |||||| |||||| ||| |||||||||||||||||||    ||||| ||||||||||| |||||||||||||||||||||| ||| ||    
T  618631 gtatttccagcctcatgtaattcctattagtcataaataattaatgtaaaatttttaactatatcaagaataatatcaattatcatatcaaatgcataac 618532  T
Q  198 a-----aaata-aatcacaacctgatttagtaattttcttttgcacgacgaagtcaatgatttgcagtttattgcagataaagtttttaagcatggagga 291  Q
    |     ||||| ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  618531 acaaaaaaatataatcataacctgatttagtaatttgcttttgcacgacgaagtcaacgatttgcagtttattgcagataaagattttaagcatggagga 618432  T
Q  292 atcccttcaatttcccgaatttcctcacaatcatccaagacaagcctccataaaaaattacatttctcgatagatttaggaagaactgtgaattgatttt 391  Q
    |||||||||||||||  || ||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||    
T  618431 atcccttcaatttccaaaagttcctcacaatcatccaagacaagcctccataaaagatgacatttttcgatagatttaggaagaactgtgaattgatttt 618332  T
Q  392 cagttaggtgtaattcttttacattagcaaacaacat 428  Q
     |||||||||||||||||| |||||||||||||||||    
T  618331 tagttaggtgtaattctttcacattagcaaacaacat 618295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 23 - 430
Target Start/End: Complemental strand, 29471801 - 29471394
Alignment:
Q  23 cagaaagaaattgacaatcctcccgagcattggtggtcgaaccactctggagtctttactcgtggcatccggaaccaagtgtttcctgcttcatgtgatt 122  Q
    ||||||||||| ||||||||| || ||||||| |||||||||||||||||| || ||  ||||||||  |||||||||||||||||||| |||||| |||    
T  29471801 cagaaagaaatagacaatcctgccaagcattgatggtcgaaccactctggaatccttgttcgtggcaaacggaaccaagtgtttcctgcctcatgtaatt 29471702  T
Q  123 cctgttaatcataaataattaatgtaagtttaaa-tatatcaagaagaatatcaattatcatatcaaatacattacaaaataaatcacaacctgatttag 221  Q
    |||| || |||||||| ||||||||||||||||  |||||||||||||||||||| || |||   ||||  | ||||||||| |||| ||||||||||||    
T  29471701 cctggtagtcataaattattaatgtaagtttaacctatatcaagaagaatatcaaata-cattaaaaattaaatacaaaatatatcataacctgatttag 29471603  T
Q  222 taattttcttttgcacgacgaagtcaatgatttgcagtttattgcagataaagtttttaagcatggaggaatcccttcaatttcccgaatttcctcacaa 321  Q
    |||||| ||||||||||  || ||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| ||| |||||||||     
T  29471602 taatttgcttttgcacggtgaggtcaatgatttgcagtttaatgcagataatgtttttaagcatggtggaatcccttcaatttcctgaagttcctcacag 29471503  T
Q  322 tcatccaagacaagcctccataaaaaattacatttctcgatagatttaggaagaactgtgaattgattttcagttaggtgtaattcttttacattagcaa 421  Q
    | ||||| ||||||||||  |||||||| |||||| ||||||||||| ||||||| | ||||||| || ||| |||||||||||||||| ||||||| ||    
T  29471502 ttatccaggacaagcctctgtaaaaaatgacatttttcgatagattttggaagaattttgaattggttatcacttaggtgtaattctttcacattagtaa 29471403  T
Q  422 acaacatga 430  Q
    |||||||||    
T  29471402 acaacatga 29471394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 23 - 430
Target Start/End: Original strand, 29663014 - 29663429
Alignment:
Q  23 cagaaagaaattgacaatcctcccgagcattggtggtcgaaccactctggagtctttactcgtggcatccggaaccaagtgtttcctgcttcatgtgatt 122  Q
    ||||| ||||||||||||||| || ||| |||||||||||| ||||||||| ||||| ||| |||||  ||||||| |||||||||||| |||||  |||    
T  29663014 cagaatgaaattgacaatcctgccaagccttggtggtcgaatcactctggaatctttgctcatggcaaacggaaccgagtgtttcctgcctcatgcaatt 29663113  T
Q  123 cctgttaatcataaataattaatgtaagtttaaatatatcaagaagaatatcaattatcatatcaaatacatta----------caaaataaatcacaac 212  Q
    ||| ||| |||  || |||||| ||  ||||||  ||||||||||||||| | |||||||||||||||||||||          ||||||||||||  ||    
T  29663114 cctattactca--aacaattaacgtttgtttaaccatatcaagaagaataacgattatcatatcaaatacattaacaataaaaacaaaataaatcattac 29663211  T
Q  213 ctgatttagtaattttcttttgcacgacgaagtcaatgatttgcagtttattgcagataaagtttttaagcatggaggaatcccttcaatttcccgaatt 312  Q
    |||| |||||||||| |||||||| ||||||| ||  ||||||||||| |  |||||||| | |||||||||||| |||||||||| ||||||| ||| |    
T  29663212 ctgacttagtaatttgcttttgcatgacgaagacagcgatttgcagttaaaagcagataatgattttaagcatggtggaatccctttaatttcctgaagt 29663311  T
Q  313 tcctcacaatcatccaagacaagcctccataaaaaattacatttctcgatagatttaggaagaactgtgaattgattttcagttaggtgtaattctttta 412  Q
    |||| ||||| |||||||||| ||||||||||||||| |||||| |||| ||||||||||||||  ||||||||| ||||| |||||||||||||||| |    
T  29663312 tccttacaattatccaagacaggcctccataaaaaatgacatttttcgaaagatttaggaagaaacgtgaattgactttcatttaggtgtaattctttca 29663411  T
Q  413 cattagcaaacaacatga 430  Q
    ||||||||||||||||||    
T  29663412 cattagcaaacaacatga 29663429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 23 - 430
Target Start/End: Original strand, 28487759 - 28488160
Alignment:
Q  23 cagaaagaaattgacaatcctcccgagcattggtggtcgaaccactctggagtctttactcgtggcatccggaaccaagtgtttcctgcttcatgtgatt 122  Q
    ||||||||||||||||||||| ||  || |||||||||||||||||||||| |||||    ||||||  |||||||||||||||||  | |||||| |||    
T  28487759 cagaaagaaattgacaatcctgcctcgctttggtggtcgaaccactctggaatctttgtctgtggcaaacggaaccaagtgtttccatcctcatgtaatt 28487858  T
Q  123 cctgttaatcataaataattaatgtaagtttaaatatatcaagaagaatatcaattatcatatcaaatacattacaaaataaatcacaacctgatttagt 222  Q
    ||||||| ||||||||||||||| ||||| ||    |||||| ||||||||||| || |||  |||||| ||  |||||||||||| |||||| |||| |    
T  28487859 cctgttagtcataaataattaatttaagtcta----tatcaataagaatatcaaata-cattacaaata-atagcaaaataaatcataacctgctttact 28487952  T
Q  223 aattttcttttgcacgacgaagtcaatgatttgcagtttattgcagataaagtttttaagcatggaggaatcccttcaatttcccgaatttcctcacaat 322  Q
    ||| | |||||||| || |||||||| ||| |||| |||| |||||||||  ||||||||| ||||||| |||||| ||||||| |||  ||||  ||||    
T  28487953 aatatgcttttgcatgaagaagtcaacgatatgcaatttagtgcagataacatttttaagcttggaggattccctttaatttcctgaagatccttgcaat 28488052  T
Q  323 catccaagacaagcctccataaaaaattacatttctcgatagatttaggaagaactgtgaattgattttcagttaggtgtaattcttttacattagcaaa 422  Q
    ||||||| || ||  |||| ||||||| |||||| || ||||||||||||||||||||||||||| | | |||||||||||||||||| |||||||||||    
T  28488053 catccaaaacgagtttccacaaaaaatgacatttttcaatagatttaggaagaactgtgaattgaatgttagttaggtgtaattctttcacattagcaaa 28488152  T
Q  423 caacatga 430  Q
    ||||||||    
T  28488153 caacatga 28488160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 23 - 430
Target Start/End: Original strand, 29800171 - 29800572
Alignment:
Q  23 cagaaagaaattgacaatcctcccgagcattggtggtcgaaccactctggagtctttactcgtggcatccggaaccaagtgtttcctgcttcatgtgatt 122  Q
    ||||||||||||||||||||| ||  || |||||||||||||||||||||| |||||    ||||||  |||||||||||||||||  | |||||| |||    
T  29800171 cagaaagaaattgacaatcctgcctcgctttggtggtcgaaccactctggaatctttgtctgtggcaaacggaaccaagtgtttccatcctcatgtaatt 29800270  T
Q  123 cctgttaatcataaataattaatgtaagtttaaatatatcaagaagaatatcaattatcatatcaaatacattacaaaataaatcacaacctgatttagt 222  Q
    ||||||| ||||||||||||||| ||||| ||    |||||| ||||||||||| || |||  |||||| ||  |||||||||||| |||||| |||| |    
T  29800271 cctgttagtcataaataattaatttaagtcta----tatcaataagaatatcaaata-cattacaaata-atagcaaaataaatcataacctgctttact 29800364  T
Q  223 aattttcttttgcacgacgaagtcaatgatttgcagtttattgcagataaagtttttaagcatggaggaatcccttcaatttcccgaatttcctcacaat 322  Q
    ||| | |||||||| || |||||||| ||| |||| |||| |||||||||  ||||||||| ||||||| |||||| ||||||| |||  ||||  ||||    
T  29800365 aatatgcttttgcatgaagaagtcaacgatatgcaatttagtgcagataacatttttaagcttggaggattccctttaatttcctgaagatccttgcaat 29800464  T
Q  323 catccaagacaagcctccataaaaaattacatttctcgatagatttaggaagaactgtgaattgattttcagttaggtgtaattcttttacattagcaaa 422  Q
    ||||||| || ||  |||| ||||||| |||||| || ||||||||||||||||||||||||||| | | |||||||||||||||||| |||||||||||    
T  29800465 catccaaaacgagtttccacaaaaaatgacatttttcaatagatttaggaagaactgtgaattgaatgttagttaggtgtaattctttcacattagcaaa 29800564  T
Q  423 caacatga 430  Q
    ||||||||    
T  29800565 caacatga 29800572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 23 - 430
Target Start/End: Original strand, 29767448 - 29767851
Alignment:
Q  23 cagaaagaaattgacaatcctcccgagcattggtggtcgaaccactctggagtctttactcgtggcatccggaaccaagtgtttcctgcttcatgtgatt 122  Q
    |||||||||||||||  |||| ||  ||||||||||||||||||||||||| ||||| | |||||||  || |||| ||| ||||| || |||||| |||    
T  29767448 cagaaagaaattgactttcctgcctcgcattggtggtcgaaccactctggaatctttgcacgtggcaaacgaaaccgagtatttccagcctcatgtaatt 29767547  T
Q  123 cctgttaatcataaataattaatgt-aagtttaaatatatcaagaagaatatcaattatcatatcaaatacattacaaaataaatcacaacctgatttag 221  Q
     || ||| ||||||||||||||||| |||||||| ||||||||||| ||||| || || |||  |||||| |  ||||||||||||| ||||||||||||    
T  29767548 tctattagtcataaataattaatgttaagtttaactatatcaagaaaaatataaaata-cattacaaataaaa-acaaaataaatcataacctgatttag 29767645  T
Q  222 taattttcttttgcacgacgaagtcaatgatttgcagtttattgcagataaagtttttaagcatggaggaatcccttcaatttcccgaatttcctcacaa 321  Q
    |||||| |||||||||||||||||||||    ||||||||| |||||||||   | |||||||||||||||||||||  ||||||  || ||||| ||||    
T  29767646 taatttgcttttgcacgacgaagtcaata---tgcagtttagtgcagataactctcttaagcatggaggaatccctttcatttccataagttccttacaa 29767742  T
Q  322 tcatccaagacaagcctccataaaaaattacatttctcgatagatttaggaagaactgtgaattgattttcagttaggtgtaattcttttacattagcaa 421  Q
    ||||||||||| |   |||||||||| | |||||| || ||||||||||||| |||||||||||||   | ||||| ||||| |||||| ||||||||||    
T  29767743 tcatccaagacgattttccataaaaattgacatttttcaatagatttaggaataactgtgaattgacagttagttatgtgtagttctttcacattagcaa 29767842  T
Q  422 acaacatga 430  Q
    |||||||||    
T  29767843 acaacatga 29767851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 29718630 - 29719057
Alignment:
Q  1 ggcaggaaatttatttctaaagcagaaagaaattgacaatcctcccgagcattggtggtcgaaccactctggagtcttt---actcgtggcatccggaac 97  Q
    |||||||||||| || | ||| ||||||||||||||||||||| ||  ||||| |||||||||||||| |||| |||||   || |||||||  || ||     
T  29718630 ggcaggaaatttgttacgaaaccagaaagaaattgacaatcctgcctcgcatttgtggtcgaaccactttggaatctttggaacccgtggcaaacgaaag 29718729  T
Q  98 caagtgtttcctgcttcatgtgattcctgttaatcataaataattaatgtaagtttaaatatatcaagaagaatatcaattatcatatcaaatacattac 197  Q
    || |||||||  || |||||| |||||||||| | | ||||||||||||||||||||| |||||||| |||||||| || || |||  |||| | |  |     
T  29718730 caggtgtttctagcctcatgtaattcctgttagtaaaaaataattaatgtaagtttaactatatcaaaaagaatataaaata-cattacaaacaaa--aa 29718826  T
Q  198 aaaataaatcacaacctgatttagtaattttcttttgcacgacgaagtcaatgatttgcagtttattgcagataaagtttttaagcatggaggaatccct 297  Q
    ||||  ||||| |||||||||||||||||| |||||||||||||||||||| ||| |||||| || |||||||||   | |||||| |||||||||||||    
T  29718827 aaaaagaatcataacctgatttagtaatttgcttttgcacgacgaagtcaacgatatgcagtgtactgcagataacactcttaagcgtggaggaatccct 29718926  T
Q  298 tcaatttcccgaatttcctcacaatcatccaagacaagcctccataaaaaattacatttctcgatagatttaggaagaactgtgaattgattttcagtta 397  Q
    | ||||||  ||| ||||| ||||||||||||||||||  |||||||||| | |||||| || ||||||||||||| || ||||| |||||| |  ||||    
T  29718927 ttaatttcgtgaagttccttacaatcatccaagacaagtttccataaaaattgacatttttcaatagatttaggaataattgtgagttgattgtttgtta 29719026  T
Q  398 ggtgtaattcttttacattagcaaacaacat 428  Q
    ||||||||||||| ||||| |||||||||||    
T  29719027 ggtgtaattctttcacattggcaaacaacat 29719057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 23 - 430
Target Start/End: Original strand, 29689469 - 29689869
Alignment:
Q  23 cagaaagaaattgacaatcctcccgagcattggtggtcgaaccactctggagtctttactcgtggcatccggaaccaagtgtttcctgcttcatgtgatt 122  Q
    |||||||||| ||||| |||| ||  |||||||||||| |||||||||||| ||||| | |||||||  |  |||| ||||||||| || |||||| |||    
T  29689469 cagaaagaaactgacattcctgcctcgcattggtggtcaaaccactctggaatctttgcccgtggcaaacaaaaccgagtgtttccagcctcatgtaatt 29689568  T
Q  123 cctgttaatcataaataattaatgtaagtttaaatatatcaagaagaatatcaattatcatatcaaatacattacaaaataaatcacaacctgatttagt 222  Q
     |||||| |||||||| |  |||||||||||||  |||||||||||||||  || ||   || |||||  |  |  |||||||| | |||||||||||||    
T  29689569 tctgttattcataaatta--aatgtaagtttaacgatatcaagaagaatagaaaatacagta-caaatttaaaaataaataaat-ataacctgatttagt 29689664  T
Q  223 aattttcttttgcacgacgaagtcaatgatttgcagtttattgcagataaagtttttaagcatggaggaatcccttcaatttcccgaatttcctcacaat 322  Q
    || || |||||||| ||||||||||||   |||||||||| |||||||||   | ||||||||||||||||||||| |||||||  || ||||| |||||    
T  29689665 aaattgcttttgcatgacgaagtcaat---ttgcagtttactgcagataactctcttaagcatggaggaatccctttaatttcctcaagttccttacaat 29689761  T
Q  323 catccaagacaagcctccataaaaaattacatttctcgatagatttaggaagaactgtgaattgattttcagttaggtgtaattcttttacattagcaaa 422  Q
    |||||||||| ||  |||||| |||||||||||| || ||||||||||||| ||||||||||| | | | |||||||||||||||||| |||||||||||    
T  29689762 catccaagaccagtttccatagaaaattacatttttcaatagatttaggaataactgtgaatttactgttagttaggtgtaattctttcacattagcaaa 29689861  T
Q  423 caacatga 430  Q
    ||||||||    
T  29689862 caacatga 29689869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 95 - 428
Target Start/End: Original strand, 29756007 - 29756339
Alignment:
Q  95 aaccaagtgtttcctgcttcatgtgattcctgttaatcataaataattaatgtaagtttaaatatatcaagaagaatatcaattatcatatcaaatacat 194  Q
    ||||| || ||||| || |||||| |||||||||| ||||||| ||||||| ||||||||| ||||||||||||||||| || || |||  |||||| |     
T  29756007 aaccatgtttttccagcctcatgtaattcctgttagtcataaacaattaatataagtttaactatatcaagaagaatataaaata-cattacaaataaaa 29756105  T
Q  195 tacaaaataaatcacaacctgatttagtaattttcttttgcacgacgaagtcaatgatttgcagtttattgcagataaagtttttaagcatggaggaatc 294  Q
     | ||||||||||| |||||||||||| ||||| || ||||||||||||||||| || |||||||||| |||||||||  || |||||||||||||||||    
T  29756106 aagaaaataaatcataacctgatttagcaatttgctcttgcacgacgaagtcaacgacttgcagtttagtgcagataacattcttaagcatggaggaatc 29756205  T
Q  295 ccttcaatttcccgaatttcctcacaatcatccaagacaagcctccataaaaaattacatttctcgatagatttaggaagaactgtgaattgattttcag 394  Q
    |||| ||||||   || | ||  ||||||||||||||  ||  |||| ||||| | ||| || || ||||||||||||| ||||||||| |||||   ||    
T  29756206 cctttaatttctttaagtgccgtacaatcatccaagatgagtttccacaaaaattgacaattttcaatagatttaggaataactgtgaaatgattactag 29756305  T
Q  395 ttaggtgtaattcttttacattagcaaacaacat 428  Q
    ||| |||||||||||| |||||||||||||||||    
T  29756306 ttaagtgtaattctttcacattagcaaacaacat 29756339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 95 - 332
Target Start/End: Original strand, 29712088 - 29712319
Alignment:
Q  95 aaccaagtgtttcctgcttcatgtgattcctgttaatcataaataattaatgtaagtttaaatatatcaagaagaatatcaattatcatatcaaatacat 194  Q
    ||||||||||||||||| | |||| |||||||| ||| ||||||||||||| ||||||||| |||||||| | |||||| || || |||  |||||| |     
T  29712088 aaccaagtgtttcctgccttatgtaattcctgtcaataataaataattaatttaagtttaactatatcaaaaggaatataaaata-cattacaaata-aa 29712185  T
Q  195 tacaaaataaatcacaacctgatttagtaattttcttttgcacgacgaagtcaatgatttgcagtttattgcagataaagtttttaagcatggaggaatc 294  Q
     | |||| |||||| |||||||||||||||| | |||||||||||||||||||| ||  ||||||||| |||||||||      ||||||||||||||||    
T  29712186 aataaaaaaaatcataacctgatttagtaatctgcttttgcacgacgaagtcaacgacatgcagtttactgcagataa----cataagcatggaggaatc 29712281  T
Q  295 ccttcaatttcccgaatttcctcacaatcatccaagac 332  Q
     ||| ||||||| ||| ||||| |||||||||||||||    
T  29712282 acttgaatttcctgaagttccttacaatcatccaagac 29712319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 29671558 - 29671884
Alignment:
Q  1 ggcaggaaatttatttctaaagcagaaagaaattgacaatcctcccgagcattggtggtcgaaccactctggagtcttt---actcgtggcatccggaac 97  Q
    ||||||||| || || | ||| ||||||||||||||||||||  ||  | ||| |||||| |||||||||||| | |||   || |||||||  |  |||    
T  29671558 ggcaggaaacttgttacgaaaccagaaagaaattgacaatccggcctcgtatttgtggtcaaaccactctggaatttttggcacccgtggcaaacaaaac 29671657  T
Q  98 caagtgtttcctgcttcatgtgattcctgttaatcataaataattaatgtaagtttaaatatatcaagaagaatatcaattatcatatcaaatacattac 197  Q
    ||||||||||| || | |||| |||||||||| | |||||||||| |    ||||||| |||||||| |||||||| || ||   || |||||| |  ||    
T  29671658 caagtgtttccagccttatgtaattcctgttagttataaataattca----agtttaactatatcaaaaagaatataaaataaatta-caaataaaa-ac 29671751  T
Q  198 aaaataaatcacaa-cctgatttagtaattttcttttgcacgacgaagtcaatgatttgcagtttattgcagataaagtttttaagcatggaggaatccc 296  Q
    ||||||||||| || |||||||||||||||| ||| ||||||| |||||||| ||  |||||||||  ||||||||  || ||||||||||||||||| |    
T  29671752 aaaataaatcataaacctgatttagtaatttgcttgtgcacgaagaagtcaacgacgtgcagtttacagcagataacattcttaagcatggaggaatcac 29671851  T
Q  297 ttcaatttcccgaatttcctcacaatcatccaa 329  Q
    || ||||||| ||| ||||| ||||||||||||    
T  29671852 tttaatttcctgaagttccttacaatcatccaa 29671884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 26 - 430
Target Start/End: Complemental strand, 12592233 - 12591828
Alignment:
Q  26 aaagaaattgacaatcctcccgagcattggtggtcgaaccactctggagtcttt---actcgtggcatccggaaccaagtgtttcctgcttcatgtgatt 122  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||| |||||   || |||||||  || |||||||||||||  || || ||  |||    
T  12592233 aaagaaattgacaatcctgccgagcatttgtggtcgaaccactctggaatctttggcacccgtggcaaacgaaaccaagtgtttctagcctcgtgcaatt 12592134  T
Q  123 cctgttaatcataaataattaatgtaagtttaaatatatcaagaagaatatcaattatcatatcaaatacattacaaaataaatcacaacctgatttagt 222  Q
    ||||||| ||| |||||||||| |||||||||| |||||||| |||||||  || || |||  |||| | |  ||||||| ||||| |||||||||||||    
T  12592133 cctgttagtcaaaaataattaaagtaagtttaactatatcaaaaagaatacaaaata-cattacaaacaaaa-acaaaatgaatcataacctgatttagt 12592036  T
Q  223 aattttcttttgcacgacgaagtcaatgatttgcagtttattgcagataaagtttttaagcatggaggaatcccttcaatttcccgaatttcctcacaat 322  Q
    ||||| ||||||||||||||||||||||| |||||||||| |||||||||  || |||||| |||||||||||||| ||||||| ||| ||||| |||||    
T  12592035 aatttgcttttgcacgacgaagtcaatgacttgcagtttagtgcagataacattcttaagcgtggaggaatccctttaatttcctgaagttccttacaat 12591936  T
Q  323 catccaagacaagcctccataaaaaattacatttctcgatagatttaggaagaactgtgaattgattttcagttaggtgtaattcttttacattagcaaa 422  Q
    |||||||||| ||  |||||||||||| |||||  |||||| | |||||||||||| |||||||||  | |||||||||||||||||  ||||||| |||    
T  12591935 catccaagacgagtttccataaaaaatgacattcttcgatacaattaggaagaactttgaattgatagttagttaggtgtaattcttgcacattagaaaa 12591836  T
Q  423 caacatga 430  Q
    ||| ||||    
T  12591835 caagatga 12591828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 134 - 428
Target Start/End: Original strand, 209615 - 209907
Alignment:
Q  134 taaataattaatgtaagtttaaatatatcaagaagaatatcaattatcatatcaaatacattacaaaataaatcacaacctgatttagtaattttctttt 233  Q
    |||| ||| ||||||||||||| ||||||||||||||||| || |||  || |||||| |    ||||||||||| |||||||||||||||||| |||||    
T  209615 taaacaatcaatgtaagtttaactatatcaagaagaatataaaatatagta-caaataaaagg-aaaataaatcataacctgatttagtaatttgctttt 209712  T
Q  234 gcacgacgaagtcaatgatttgcagtttattgcagataaagtttttaagcatggaggaatcccttcaatttcccgaatttcctcacaatcatccaagaca 333  Q
    ||||||||||||||||||| ||||||||| |||||||||  || ||||||||||||||||||||| ||||||  ||| | ||| |||||||||||||||     
T  209713 gcacgacgaagtcaatgatatgcagtttagtgcagataacattcttaagcatggaggaatccctttaatttcttgaagtgccttacaatcatccaagacg 209812  T
Q  334 agcctccataaaaaattacatttctcgatagatttaggaagaactgtgaattgattttcagttaggtgtaattcttttacattagcaaacaacat 428  Q
    ||  |||| ||| | ||||| |  ||||||||||||||||  |||||||| |||||   |||||||||||||||||| ||||||||||| |||||    
T  209813 agtttccacaaagatttacaatattcgatagatttaggaattactgtgaagtgattactagttaggtgtaattctttcacattagcaaataacat 209907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 208924 - 209060
Alignment:
Q  1 ggcaggaaatttatttctaaagcagaaagaaattgacaatcctcccgagcattggtggtcgaaccactctggagtctttactcgtggcatccggaaccaa 100  Q
    ||||||||| || || | ||| |||||||||| |||||||| | || | || |||||||||||||||||||||    |  |||||||||  || ||||||    
T  208924 ggcaggaaacttgttacgaaaccagaaagaaaatgacaatcttgccaaacagtggtggtcgaaccactctggaaatgtcgctcgtggcaaacgaaaccaa 209023  T
Q  101 gtgtttcctgcttcatgtgattcctgttaatcataaa 137  Q
    |||||||| || |||||| |||||||||| |||||||    
T  209024 gtgtttccagcctcatgtaattcctgttagtcataaa 209060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 347
Target Start/End: Original strand, 5918746 - 5918895
Alignment:
Q  198 aaaataaatcacaacctgatttagtaattttcttttgcacgacgaagtcaatgatttgcagtttattgcagataaagtttttaagcatggaggaatccct 297  Q
    |||||||||||  |||||||| |  || || ||| | |||||| ||||||| ||| ||||||| || || || ||||||||||||  ||| |||||||||    
T  5918746 aaaataaatcaagacctgattcataaacttgcttgtacacgacaaagtcaaagatatgcagttaatggccgaaaaagtttttaagtttggcggaatccct 5918845  T
Q  298 tcaatttcccgaatttcctcacaatcatccaagacaagcctccataaaaa 347  Q
    |  |||||| |||  | |||||| | |||||||| |||| || |||||||    
T  5918846 ttgatttcctgaagattctcacagttatccaagaaaagcttctataaaaa 5918895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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