View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4687-Insertion-1 (Length: 806)
Name: NF4687-Insertion-1
Description: NF4687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4687-Insertion-1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 555; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 8 - 591
Target Start/End: Complemental strand, 11606165 - 11605582
Alignment:
| Q |
8 |
gttcaatacatcaaagacgaactcaaacgccacaatgccatcttaacgagagatgatgcattggaagacaaagatccagaactcaaagtatgggttaaaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11606165 |
gttcaatacatcaaagacgaactcaaacgccacaatgccatcttaacgagagatgatgcattggaagacaaagatcctgaactcaaagtatgggttaaaa |
11606066 |
T |
|
| Q |
108 |
gggtaagagatattgctcaagatatggaagatgctatagatgaatacaatcttcgccttgtcgatcatcgacaagggaacaacaaaaattcttcttttca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11606065 |
gggtaagagatattgctcaagatatggaagatgctatagatgaatacaatcttcgccttgtcgatcatcgacaagggaacaacaaaaattcttcttttca |
11605966 |
T |
|
| Q |
208 |
caaggttgcttttgacatcaagaccatgaaacctagacacagaatagcttcagatattnnnnnnntcaaatccaaagttgaagctatcactcaaggacgt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11605965 |
caaggttgcttttgacatcaagaccatgaaacctagacacagaatagcttcagatattaaaaaaatcaaatccaaagttgaagctatcactcaaggacgt |
11605866 |
T |
|
| Q |
308 |
ccaatgatatctggtgtaggttcaagctcaagtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaattgc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11605865 |
ccaatgatatctggtgtaggttcaagctcaagtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaattgc |
11605766 |
T |
|
| Q |
408 |
attaggacataagtcaaataaaagtattagcatgcatataaacagttgtaggatgtacaccatgttgatttatcaaagatattaaaaaggtattgtttca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11605765 |
attaggacataagtcaaataaaagtattagcatgcatataaacaattgtaggatgtacaccatgttgatttatcaaagatattaaaaaggtattgtttca |
11605666 |
T |
|
| Q |
508 |
ttgattatagtctgtctgtctgttgtaatccttaaattcaaagagagggttgtggaattggttgttaaaactgcgagttaactc |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11605665 |
ttgattatagtctgtctgtctgttgtaatccttaaattcaaagagagggttgtggaattggttgttaaaactgcgagttaactc |
11605582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 339 - 790
Target Start/End: Complemental strand, 14484668 - 14484219
Alignment:
| Q |
339 |
gtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaattgcattaggacataagtcaaataaaagtattagc |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14484668 |
gtcaaaggcgttcatcaaggcttgatagtcaaagtaatgttggaatttattttgataataattaattgcattaggacataagtcaaataaaagtattagc |
14484569 |
T |
|
| Q |
439 |
atgcatataaacagttgtaggatgtacaccatgttgatttatcaaagatattaaaaaggtattgtttcattgattatagtctgtctgtctgttgtaatcc |
538 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14484568 |
atgcatataaacaattgtaggatgtacaccatgttggtttatcaaagatattaaaaaggtattgtttcattgattatata--gtctgtctgttgtaatcc |
14484471 |
T |
|
| Q |
539 |
ttaaattcaaagagagggttgtggaattggttgttaaaactgcgagttaactcgtggaaatttgaaaatgaaaatggagtttactcagttgtaaacccga |
638 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
14484470 |
ttaaattcaaagagagggttgtggaattagttgttaaaactgcgagttaactcgttgaaatttgaaaatgaaaatggagtttactcggttgtaaacccaa |
14484371 |
T |
|
| Q |
639 |
attttagtaaatttgaaaatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaaactcgcaatagatttcaa |
738 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14484370 |
attttagtaaatttgaaaatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaaactcgcaatagattttaa |
14484271 |
T |
|
| Q |
739 |
tagaatttttaatctttcattccatctcaaagttcacattctggtctttttc |
790 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14484270 |
tagaattttttatctttcattccatctcaaagttcacattctggtctttttc |
14484219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 615 - 806
Target Start/End: Complemental strand, 11605591 - 11605400
Alignment:
| Q |
615 |
gagtttactcagttgtaaacccgaattttagtaaatttgaaaatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagattt |
714 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11605591 |
gagttaactcagttgtaaacccgaattttagtaaatttgaaaatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagattt |
11605492 |
T |
|
| Q |
715 |
gggtaaactcgcaatagatttcaatagaatttttaatctttcattccatctcaaagttcacattctggtctttttcttctttgtttgtttga |
806 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11605491 |
gggtgaactcgcaatagatttcaatagaatttttaatctttcattccatctcaaagttcacattctggtctttttcttctttgttagtttga |
11605400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 8 - 409
Target Start/End: Original strand, 11621408 - 11621806
Alignment:
| Q |
8 |
gttcaatacatcaaagacgaactcaaacgccacaatgccatcttaacgagagatgatgcattggaagacaaagatccagaactcaaagtatgggttaaaa |
107 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| |||||||| | | || |||| || ||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
11621408 |
gttcaatacatcaacgacgaactcgaacgccacaaggccatcttgatggcagctgattcaatggaagacaaagaccctgaactcaaagtatgggttaaaa |
11621507 |
T |
|
| Q |
108 |
gggtaagagatattgctcaagatatggaagatgctatagatgaatacaatcttcgccttgtcgatcatcgacaagggaacaacaaaaattcttcttttca |
207 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||| || | || | |||| |||||| |
|
|
| T |
11621508 |
gggttagagttattgctcaagacatggaagatgctatagatgaatactatcttcgccttgtcgatcatcaacaaggaaaaatcaga---tcttattttca |
11621604 |
T |
|
| Q |
208 |
caaggttgcttttgacatcaagaccatgaaacctagacacagaatagcttcagatattnnnnnnntcaaatccaaagttgaagctatcactcaaggacgt |
307 |
Q |
| |
|
|||| || ||| | ||| |||||||||||| ||||||||| |||||||||| |||| ||||||| |||||||||| |||| | | ||| |
|
|
| T |
11621605 |
caagattcttttcggcattaagaccatgaaagctagacacaaaatagcttcaaatatacaaggaatcaaatcaaaagttgaagttatcttgcgtaggcgt |
11621704 |
T |
|
| Q |
308 |
ccaatgatatctggtgtaggttcaagctcaagtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaattgc |
407 |
Q |
| |
|
||||| ||| ||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| ||||||||| ||| ||||||| |
|
|
| T |
11621705 |
ccaatcatacctgatgtagcttcaagctcaagtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattaattttgatagtaactaattgc |
11621804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 8 - 405
Target Start/End: Original strand, 11639899 - 11640283
Alignment:
| Q |
8 |
gttcaatacatcaaagacgaactcaaacgccacaatgccatcttaacgagagatgatgcattggaagacaaagatccagaactcaaagtatgggttaaaa |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||| | | || |||| |||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
11639899 |
gttcaatacatcaaagacgaacttgaacgccacaagtccatcttgatgttagctgattcattggaagacaaagaccctgaactcaaagtatgggttaaaa |
11639998 |
T |
|
| Q |
108 |
gggtaagagatattgctcaagatatggaagatgctatagatgaatacaatcttcgccttgtcgatcatcgacaagggaacaacaaaaattcttcttttca |
207 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||| || | |||| ||||||| ||| |
|
|
| T |
11639999 |
gagtaagagatattgctcaagacatggaagatgctatagatgaatactatcttcgccttgtcgatcatcaacaaggcaaaatcaaa---tcttcttatca |
11640095 |
T |
|
| Q |
208 |
caaggttgcttttgacatcaagaccatgaaacctagacacagaatagcttcagatattnnnnnnntcaaatccaaagttgaagctatcactcaaggacgt |
307 |
Q |
| |
|
|||| ||| ||||| || |||||||||||| |||||| || ||| |||||| |||| |||||||||||||||||| |||| | || ||||| |
|
|
| T |
11640096 |
caagattgtttttggaattaagaccatgaaagctagacgcaaaattgcttcaaatatacaaggaatcaaatccaaagttgaagttatctcgcacagacgt |
11640195 |
T |
|
| Q |
308 |
ccaatgatatctggtgtaggttcaagctcaagtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaatt |
405 |
Q |
| |
|
||||| ||| | |||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||| |||||||||||| |
|
|
| T |
11640196 |
ccaatcatacc---------ttcaagctcaagtcaaaggctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttaataattaatt |
11640283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 339 - 790
Target Start/End: Original strand, 33735417 - 33735878
Alignment:
| Q |
339 |
gtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaattgcattaggacataagtcaaataaaagtattagc |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33735417 |
gtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaattgcattaggacataagtcaaataaaagtattagc |
33735516 |
T |
|
| Q |
439 |
atgcatataaacagttgtaggatgtacaccatgttgatttatcaaagatattaaaaaggtattgtttcattgattatagtctgtctgtctgttgtaatcc |
538 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
33735517 |
atgcatataaacaattgtaggatgtacaccatgttggttaatcaaagatattaaaaaggtattgtttcattgattata--tagtctgtctgttgtattcc |
33735614 |
T |
|
| Q |
539 |
ttaaattcaaagagagggttgtggaattggttgttaaaactgcgagttaactcgtggaaatttgaaaatgaaaatggagtttactcagttgtaa------ |
632 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33735615 |
ttaaattcaaagagagggttgtggaattagttgttaaaactgcgagttaactcgttgaaatttgaaaatgaaaatggagtttactcggttgtaaactcgg |
33735714 |
T |
|
| Q |
633 |
------acccgaattttagtaaatttgaaaatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaaactcgc |
726 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33735715 |
ttgtagactcgaattttagtaaatttgaaaatgaaactgagtttactcaactggacatgaagtgaactcgacaaactcggatagatttgggtaaactcgc |
33735814 |
T |
|
| Q |
727 |
aatagatttcaatagaatttttaatctttcattccatctcaaagttcacattctggtctttttc |
790 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33735815 |
aatagattttaatagaattttttatctttcattccatctcaaagttcacattctggtctttttc |
33735878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 669 - 790
Target Start/End: Original strand, 22473237 - 22473358
Alignment:
| Q |
669 |
ttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaaactcgcaatagatttcaatagaatttttaatctttcattccatctcaa |
768 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
22473237 |
ttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaaacttgcaatagattttaatagaattttttatctttcattccatctcaa |
22473336 |
T |
|
| Q |
769 |
agttcacattctggtctttttc |
790 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
22473337 |
agttcacattccggtctttttc |
22473358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 4e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 448 - 525
Target Start/End: Original strand, 25042188 - 25042265
Alignment:
| Q |
448 |
aacagttgtaggatgtacaccatgttgatttatcaaagatattaaaaaggtattgtttcattgattatagtctgtctg |
525 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25042188 |
aacaattgtaggatgtacaccatgttggtttatcaaagatattaaaaaggtattgtttcattgattatagtctgtctg |
25042265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 630 - 672
Target Start/End: Original strand, 4197079 - 4197121
Alignment:
| Q |
630 |
taaacccgaattttagtaaatttgaaaatgaaactgagtttac |
672 |
Q |
| |
|
||||| |||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
4197079 |
taaactcgaattttagtaaacttggaaatgaaactgagtttac |
4197121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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