View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4687-Insertion-2 (Length: 990)
Name: NF4687-Insertion-2
Description: NF4687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4687-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 908; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 908; E-Value: 0
Query Start/End: Original strand, 8 - 987
Target Start/End: Original strand, 28341383 - 28342363
Alignment:
| Q |
8 |
gtaagaccatctgaagtatatgaaaatctacacatttccataggaggtgcaaagtacataggcactggcaattttgaaggaagacttggcaaaggagctt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28341383 |
gtaagaccatctgaagtatatgaaaatctacacatttccataggaggtgcaaagtacataggcactggcaattttgaaggaagacttggcaaaggagctt |
28341482 |
T |
|
| Q |
108 |
caaaattcaaaacattaatcacttgtcttatagaaggcctcatagtaaaatctggatgacaacaccataaccctactaccatcaagcattccattttcct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28341483 |
caaaattcaaaacattaatcacttgtcttatagaaggcctcatagtaaaatctggatgacaacaccataaccctactaccatcaagcattccattttcct |
28341582 |
T |
|
| Q |
208 |
ttcatcaaattccaaatttaatcctctatcaactccttcaaataattcaccttttccatataactcccaaacccattccacaagcctaactttcttagct |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28341583 |
ttcatcaaattccaaatttaatcctctatcaactccttcaaataattcaccttttccatataactcccaaacccattccacaagcctaattttcttagcc |
28341682 |
T |
|
| Q |
308 |
tcttcatttgactcaatagatcttctgccacatgtgatttcaagtgcaacaacaccaaaactataaacatcagattctttacttgatttccctgttgtaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28341683 |
tcttcatttgactcaatagatcttctaccacatgtgatttcaagtgcaacaacaccaaaactataaacatcagattctttacttgatttccctgttgtaa |
28341782 |
T |
|
| Q |
408 |
cacattcaggtgctaagtatcccattgtgcctgccaaaacagttgtttgagaaccaagttcatgatctactagtcttgcaagaccaaaatcaccaagttt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28341783 |
cacattcaggtgctaagtatcccattgtgcctgccaaaacagttgtttgagaaccaagttcatgatctactagtcttgcaagaccaaaatcaccaagttt |
28341882 |
T |
|
| Q |
508 |
tgcattgaaatttgcatctaacattacattacttgacttaatatctctatgcactacacattgttcccactcttcatgtaaataaagaagagatgatgct |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28341883 |
agcattgaaatttgcatctaacattacattacttgacttaatatctctatgcactacacattgttcccactcttcatgtaaataaagaagagatgatgct |
28341982 |
T |
|
| Q |
608 |
atacctaatgctattttgtaccttacactccaagtaagcatcacccctttaccaaatagatgataatcaagacttccattaggcatgtattcataaacaa |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28341983 |
atacctaatgctattttgtaccttacactccaagtaagcatcacccctttaccaaatagatgataatcaagacttccattaggcatgtattcataaacaa |
28342082 |
T |
|
| Q |
708 |
gtaaaagctcacttttttcatgacaccaacctaagagttgaaccaaatttctatgtcttagcttgcttattattcttacttctggtatgtattccttttt |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
28342083 |
gtaaaagctcacttttttcatgacaccaacctaagagttgaaccaaatttctatgtcttagcttgcttattattcttacttctgatatgtattccttttt |
28342182 |
T |
|
| Q |
808 |
cccttgtcttgacccttttgaaaccctcttcacagccacttctaatttgttgnnnnnnncaagtaaacctttgtaaacacctccaaatcca-cttctcca |
906 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
28342183 |
cccttgtcttgacccttttgaaaccctcttcacagccacttctaatttgttgtttttttcaagtaaacctttgtaaacacctccaaatccaccttctcca |
28342282 |
T |
|
| Q |
907 |
agctttcctctttcatcgaaaccatttgttgaattggttagttctttggaagtgacctttttgggaccagttcctctctcg |
987 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| | |||| |||||||||||||||||| |
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|
| T |
28342283 |
agctttcctttttcatcgaaaccatttgttgaattgcttagttctttgtaagtgaacctttttggaccagttcctctctcg |
28342363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 385 - 570
Target Start/End: Original strand, 28336286 - 28336470
Alignment:
| Q |
385 |
tttacttgatttccctgttgtaacacattcaggtgctaagtatcccattgtgcctgccaaaacagttgtttgagaaccaagttcatgatctactagtctt |
484 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| | |
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|
| T |
28336286 |
tttacttgacttccctgttgtaacacattctggtgctaagtatcccattgttcctgccaaaacagttgtatgataaccaagttcatgatctactagtcat |
28336385 |
T |
|
| Q |
485 |
gcaagaccaaaatcaccaagttttgcattgaaatttgcatctaacattacattacttgacttaatatctctatgcactacacattg |
570 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
28336386 |
gcaagaccaaaatcaccaagtttggcattg-aatttgcatctaacattacattgcttgacttaatatctctatgcaccacacattg |
28336470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 491 - 741
Target Start/End: Complemental strand, 28279317 - 28279067
Alignment:
| Q |
491 |
ccaaaatcaccaagttttgcattgaaatttgcatctaacattacattacttgacttaatatctctatgcactacacattgttcccactcttcatgtaaat |
590 |
Q |
| |
|
|||||||||||||| || |||||||| | | ||||||||| ||||||||||| |||||||| ||||| || ||||||| |||||| ||||||||||||| |
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|
| T |
28279317 |
ccaaaatcaccaagcttgacattgaaactagaatctaacataacattacttgatttaatatccctatgtaccacacatttttcccattcttcatgtaaat |
28279218 |
T |
|
| Q |
591 |
aaagaagagatgatgctatacctaatgctattttgtaccttacactccaagtaagcatcacccctttaccaaatagatgataatcaagacttccattagg |
690 |
Q |
| |
|
|||| | | ||||| | | | ||||||||||| ||||| |||||||| ||| | | ||||||||||| |||| |||| || || || ||||| |
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| T |
28279217 |
aaagcacaccagatgccaattcaagtgctattttgtgccttagactccaagaaagaggtattcttttaccaaataaatgagaatccaggctaccgttagg |
28279118 |
T |
|
| Q |
691 |
catgtattcataaacaagtaaaagctcacttttttcatgacaccaacctaa |
741 |
Q |
| |
|
||| | ||||||||||| | || ||||| ||||||||| ||||||||||| |
|
|
| T |
28279117 |
cataaactcataaacaagaagaaactcacctttttcatggcaccaacctaa |
28279067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 491 - 738
Target Start/End: Original strand, 28294369 - 28294616
Alignment:
| Q |
491 |
ccaaaatcaccaagttttgcattgaaatttgcatctaacattacattacttgacttaatatctctatgcactacacattgttcccactcttcatgtaaat |
590 |
Q |
| |
|
|||||||||||||| || |||||||| ||| |||||||| ||||||||||| |||||||| ||||| || ||||| ||||| |||||||||| || |
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|
| T |
28294369 |
ccaaaatcaccaagcttgacattgaaacttgagtctaacataacattacttgatttaatatccctatgaaccacacacctctcccattcttcatgtagat |
28294468 |
T |
|
| Q |
591 |
aaagaagagatgatgctatacctaatgctattttgtaccttacactccaagtaagcatcacccctttaccaaatagatgataatcaagacttccattagg |
690 |
Q |
| |
|
|||| | | || || | || | |||||||||| |||||||| ||||| ||| | ||||||||||| |||| |||||||||| ||||| || |
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|
| T |
28294469 |
aaagcaaaccagaagccaatccaagagctattttgtgccttacaccccaagaaagaggtgttcttttaccaaataaatgagaatcaagactaccatttgg |
28294568 |
T |
|
| Q |
691 |
catgtattcataaacaagtaaaagctcacttttttcatgacaccaacc |
738 |
Q |
| |
|
|||| | ||||||||||||| || ||||| ||| ||||| |||||||| |
|
|
| T |
28294569 |
catgaactcataaacaagtagaaactcacctttgtcatggcaccaacc |
28294616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 491 - 735
Target Start/End: Original strand, 28264554 - 28264798
Alignment:
| Q |
491 |
ccaaaatcaccaagttttgcattgaaatttgcatctaacattacattacttgacttaatatctctatgcactacacattgttcccactcttcatgtaaat |
590 |
Q |
| |
|
||||| |||||||| || |||||||| | | ||||| ||| ||||||||||| |||||||| ||||| || ||||| ||||| |||||||||| || |
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|
| T |
28264554 |
ccaaagtcaccaagcttaacattgaaactagaatctagcataacattacttgatttaatatccctatgtaccacacacctctcccattcttcatgtagat |
28264653 |
T |
|
| Q |
591 |
aaagaagagatgatgctatacctaatgctattttgtaccttacactccaagtaagcatcacccctttaccaaatagatgataatcaagacttccattagg |
690 |
Q |
| |
|
|||| | | || || | || | ||||||||||| ||||||| |||||| ||| || ||||||||||| |||| |||||||||| ||||| || |
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|
| T |
28264654 |
aaagcacaccagaggccaagccaagtgctattttgtgccttacaatccaaggaagaggtgtccttttaccaaataaatgagaatcaagactaccatttgg |
28264753 |
T |
|
| Q |
691 |
catgtattcataaacaagtaaaagctcacttttttcatgacacca |
735 |
Q |
| |
|
|||| | ||||||||||||| || ||||| ||| ||||| ||||| |
|
|
| T |
28264754 |
catgaactcataaacaagtagaaactcacctttatcatggcacca |
28264798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 655 - 744
Target Start/End: Original strand, 28304735 - 28304824
Alignment:
| Q |
655 |
tttaccaaatagatgataatcaagacttccattaggcatgtattcataaacaagtaaaagctcacttttttcatgacaccaacctaagag |
744 |
Q |
| |
|
||||||||||| |||| |||||||||| ||||| |||||| | ||||||| ||||| || ||||| ||| ||||| ||||| |||||||| |
|
|
| T |
28304735 |
tttaccaaataaatgagaatcaagactaccatttggcatgaactcataaataagtagaaactcacctttgtcatggcaccagcctaagag |
28304824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 662 - 744
Target Start/End: Complemental strand, 28289011 - 28288929
Alignment:
| Q |
662 |
aatagatgataatcaagacttccattaggcatgtattcataaacaagtaaaagctcacttttttcatgacaccaacctaagag |
744 |
Q |
| |
|
|||| |||| |||||||||| ||||| |||||| | ||||||||||||| || ||||| ||| ||||| ||||| |||||||| |
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|
| T |
28289011 |
aataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttgtcatggcaccatcctaagag |
28288929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 353 - 591
Target Start/End: Complemental strand, 36939522 - 36939284
Alignment:
| Q |
353 |
gcaacaacaccaaaactataaacatcagattctttacttgatttccctgttgtaacacattcaggtgctaagtatcccattgtgcctgccaaaacagttg |
452 |
Q |
| |
|
||||||| |||||||||||| || || | ||||||||| | | | ||||| ||| |||||||||| || | |||||||| || ||||| ||| | || | |
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|
| T |
36939522 |
gcaacaataccaaaactatacacgtctgtttctttactagctcttcctgtggtagcacattcaggagccatgtatcccaaagtccctgctaaagctgtag |
36939423 |
T |
|
| Q |
453 |
tttgagaaccaagttcatgatctactagtcttgcaagaccaaaatcaccaagttttgcattgaaatttgcatctaacattacattacttgacttaatatc |
552 |
Q |
| |
|
|||| | ||| | |||| || || | ||||| | ||| ||||| |||||||||||||| || | || ||| ||||| | ||||||| || || || |
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|
| T |
36939422 |
tttgtgcaccttttgcatggtccacaaaccttgctaaaccgaaatctccaagttttgcattaaactctgaatccaacatgatgttacttgcttttatgtc |
36939323 |
T |
|
| Q |
553 |
tctatgcactacacattgttcccactcttcatgtaaata |
591 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||| |
|
|
| T |
36939322 |
tctatgtacaacacattgttcccattcttcatgcaaata |
36939284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 656 - 705
Target Start/End: Original strand, 6157154 - 6157203
Alignment:
| Q |
656 |
ttaccaaatagatgataatcaagacttccattaggcatgtattcataaac |
705 |
Q |
| |
|
|||||||| ||||||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
6157154 |
ttaccaaaaagatgatcttcaagacatcccttaggcatgtattcataaac |
6157203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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