View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4687-Insertion-3 (Length: 632)

Name: NF4687-Insertion-3
Description: NF4687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4687-Insertion-3
NF4687-Insertion-3
[»] chr1 (4 HSPs)
chr1 (130-632)||(2723774-2724257)
chr1 (8-106)||(2724253-2724351)
chr1 (236-402)||(2710372-2710537)
chr1 (512-632)||(2710126-2710234)
[»] chr7 (2 HSPs)
chr7 (150-219)||(48040040-48040109)
chr7 (41-115)||(48039900-48039974)


Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 130 - 632
Target Start/End: Complemental strand, 2724257 - 2723774
Alignment:
Q  130 tctattaacaataataaactctctctactctaaccattttctgtttcaagctttctcaatcacaacaatggagattctcatcttctatcaacacgttcct 229  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2724257 tctattaacaataataaactctctctactctaaccgttttctgtttcaagctttctcaatcacaacaatggagattctcatcttctatcaacacgttcct 2724158  T
Q  230 atgatttttatattctaatttaacaaaacatttgccaacaagttccaagctcctgcacaagtagccttgtgataaccatatgcgttcccccggctatata 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2724157 atgatttttatattctaatttaacaaaacatttgccaacaagttccaagctcctgcacaagtagccttgtgataaccatatgcgttcccccggctatata 2724058  T
Q  330 taattgagtgaaagaggcatgcattttacactgacaaccattatttttccacttcatacaatcgaattcaaaagcaatttttaagagtgggataatgtgg 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2724057 taattgagtgaaagaggcatgcattttacactgacaaccattatttttccacttcatacaatcgaattcaaaagcaatttttaagagtgggataatgtgg 2723958  T
Q  430 ccaaataatagactctaattccaatgcatgctctttaatttaaactctataatttgtatcgtgacaatcaattggcgctatttattccaataacaatcct 529  Q
    ||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2723957 ccaaataatagactctaattccaatgcatg--------------ctctataatttgtatcgtgacaatcaattggtgctatttattccaataacaatcct 2723872  T
Q  530 ccatgtggcaatagtctaacattcaattcaatacagattatgtggcaatggcaatcaattagtgctacttattctaattgaatcatgtcaacaacaaatt 629  Q
    ||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2723871 ccatgtggcaatagtctaac-----attcaatacagattatgtggcaatggcaatcaattagtgctacttattctaattgaatcatgtcaacaacaaatt 2723777  T

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Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 2724351 - 2724253
Alignment:
Q  8 aagagtatagcctaagcttgtaatagttggtaacaagcttctattagactaagtgacagctgttagattagtacacctgtcacaatcctatgcatctat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2724351 aagagtatagcctaagcttgtaatagttggtaacaagcttctattagactaagtgacagctgttagattagtacacctgtcacaatcctatgcatctat 2724253  T

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Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 236 - 402
Target Start/End: Complemental strand, 2710537 - 2710372
Alignment:
Q  236 tttatattctaatttaacaaaacatttgccaacaagttccaagctcctgcacaagtagccttgtgataaccatatgcgttcccccggctatatataattg 335  Q
    |||||||||||| | ||||||||||||| ||| || |||||||||| | ||||| ||||||||||||||||||   ||| ||||||||||||||||||||    
T  2710537 tttatattctaactgaacaaaacatttgacaataaattccaagctctt-cacaaatagccttgtgataaccatgcacgtacccccggctatatataattg 2710439  T
Q  336 agtgaaagaggcatgcattttacactgacaaccattatttttccacttcatacaatcgaattcaaaa 402  Q
    ||| |||| | |||||||||||||| ||||| ||||| ||| ||||||||||||||| |||| ||||    
T  2710438 agttaaagggacatgcattttacaccgacaaacattactttgccacttcatacaatcaaattaaaaa 2710372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 512 - 632
Target Start/End: Complemental strand, 2710234 - 2710126
Alignment:
Q  512 tattccaataacaa--tcctccatgtggcaatagtctaacattcaattcaatacagattatgtggcaatggcaatcaattagtgctacttattctaattg 609  Q
    ||||||||||||||  |||||| ||||||||||||| ||||||||||     |||||||||      |||||||||||||  ||||   |||||||||||    
T  2710234 tattccaataacaaaatcctccgtgtggcaatagtccaacattcaat-----acagattat------atggcaatcaattgatgct---tattctaattg 2710149  T
Q  610 aatcatgtcaacaacaaattacc 632  Q
    |||||||| ||||||||||||||    
T  2710148 aatcatgtgaacaacaaattacc 2710126  T

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Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 48040040 - 48040109
Alignment:
Q  150 ctctctactctaaccattttctgtttcaagctttctcaatcacaacaatggagattctcatcttctatca 219  Q
    |||||| |||||||  ||||||||||||||||||||||||| || || ||||||||||||||||||||||    
T  48040040 ctctctcctctaactgttttctgtttcaagctttctcaatctcatcactggagattctcatcttctatca 48040109  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 48039900 - 48039974
Alignment:
Q  41 caagcttctattagactaagtgacagctgttagattagtacacctgtcacaatcctatgcatctataaatacttg 115  Q
    ||||||||||||||| | || |||| ||||||||||  ||||||||||| ||  ||  |||||||||||||||||    
T  48039900 caagcttctattagatttagcgacatctgttagattgttacacctgtcataactcttggcatctataaatacttg 48039974  T

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