View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4687-Insertion-4 (Length: 601)

Name: NF4687-Insertion-4
Description: NF4687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4687-Insertion-4
NF4687-Insertion-4
[»] chr3 (6 HSPs)
chr3 (353-601)||(12484197-12484444)
chr3 (7-229)||(12484567-12484790)
chr3 (7-127)||(14540911-14541028)
chr3 (137-212)||(11059306-11059381)
chr3 (560-594)||(11059873-11059907)
chr3 (139-220)||(25374288-25374369)
[»] chr5 (4 HSPs)
chr5 (359-597)||(21364826-21365064)
chr5 (137-229)||(29501223-29501315)
chr5 (139-229)||(20495023-20495113)
chr5 (359-407)||(29501033-29501081)
[»] chr8 (5 HSPs)
chr8 (359-601)||(22717029-22717271)
chr8 (137-229)||(22717403-22717495)
chr8 (535-596)||(20399004-20399065)
chr8 (137-218)||(19700948-19701029)
chr8 (138-216)||(13220741-13220819)
[»] chr1 (9 HSPs)
chr1 (359-601)||(14646600-14646842)
chr1 (421-601)||(10765167-10765347)
chr1 (359-512)||(14268024-14268177)
chr1 (141-229)||(10758937-10759025)
chr1 (137-229)||(14267789-14267881)
chr1 (535-596)||(14268180-14268241)
chr1 (137-220)||(15736137-15736220)
chr1 (359-417)||(10759169-10759227)
chr1 (137-212)||(45396932-45397007)
[»] chr7 (7 HSPs)
chr7 (359-596)||(45484976-45485212)
chr7 (359-542)||(7115644-7115827)
chr7 (137-229)||(7115973-7116065)
chr7 (138-228)||(45484746-45484836)
chr7 (137-217)||(12130032-12130112)
chr7 (138-224)||(8612631-8612718)
chr7 (139-194)||(7324359-7324415)
[»] chr6 (2 HSPs)
chr6 (137-216)||(11070722-11070801)
chr6 (139-198)||(27095839-27095899)
[»] scaffold0056 (1 HSPs)
scaffold0056 (152-229)||(68455-68532)
[»] chr2 (2 HSPs)
chr2 (137-218)||(24519873-24519954)
chr2 (137-212)||(2522705-2522780)
[»] chr4 (1 HSPs)
chr4 (137-229)||(16601159-16601251)
[»] scaffold0020 (1 HSPs)
scaffold0020 (138-218)||(122707-122787)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 353 - 601
Target Start/End: Complemental strand, 12484444 - 12484197
Alignment:
Q  353 ggtaattatccctagagaagtcaaaagctaacagaggaggtaatctgtcaaaccaagcagtgtcaggaaagtcattttcgaggaagccagccaacggttc 452  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||    
T  12484444 ggtaattatccctagaga-gtcaaaagccaacagaggaggtaatctgtcaaaccaatcattgtcaggaaagtcatttccgaggaagccagccaacggttc 12484346  T
Q  453 cgaagacggaaaggaatgagatccatgtccttgaaagcaagaacaaccgcagatgaatcactttccacccagatattccagcaaataatcttcatttgga 552  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12484345 cgaagacggaaaggaatgagatccgtgtccttgaaagcaagaacagccgcagatgaatcactttccacccagatattccagtaaataatcttcatttgga 12484246  T
Q  553 attaggtagaggaccctgggaacgggttgcatatgttgcctttgtcgcc 601  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12484245 attaggtagaggaccctgggagcgggttgcatatgttgcctttgtcgcc 12484197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 12484790 - 12484567
Alignment:
Q  7 aatatctaaactaagtaatccaaaataagtttatgttaaaattgtcatttgtatgccaaaagaacacttaactgtaagtgtttatactcttcactttgaa 106  Q
    ||||| |||||||| ||||||||| ||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12484790 aatatttaaactaaataatccaaa-taagtttttgtcaaaattgtcatttgtatgccaaaagcacacttaactgtaagtgtttatactcttcactttgaa 12484692  T
Q  107 gatgactaaaatgaatagaca---nnnnnnnnnggataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccac 203  Q
    |||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  12484691 gatgactaaaatgaatagacattttttttttgtggataaggcaagaagtaggggaggcatcaaggagccc-gagacatcccaactaggttgacaccccac 12484593  T
Q  204 tggaactcctatcctataccgactac 229  Q
    ||||||||||||||||||||||||||    
T  12484592 tggaactcctatcctataccgactac 12484567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 14540911 - 14541028
Alignment:
Q  7 aatatctaaactaagtaatccaaaataagtttatgttaaaattgtcatttgtatgccaaaagaacacttaactgtaagtgtttatactcttcactttgaa 106  Q
    |||||||||||||| | || ||||||||||||  |||||| ||||||||||||||||||||| |||||||||   |||||||||||||||||||||||||    
T  14540911 aatatctaaactaaatgattcaaaataagttt--gttaaa-ttgtcatttgtatgccaaaagcacacttaacaacaagtgtttatactcttcactttgaa 14541007  T
Q  107 gatgactaaaatgaatagaca 127  Q
    |||| ||||||||||||||||    
T  14541008 gatgcctaaaatgaatagaca 14541028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 11059306 - 11059381
Alignment:
Q  137 ggataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcc 212  Q
    |||||| ||||||||||||  ||  ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11059306 ggataaagcaagaagtaggttagatatcaaggagcccagagacatcccaactaggttggcactccactggaactcc 11059381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 560 - 594
Target Start/End: Original strand, 11059873 - 11059907
Alignment:
Q  560 agaggaccctgggaacgggttgcatatgttgcctt 594  Q
    ||||||||||| |||||||||||||||||||||||    
T  11059873 agaggaccctgagaacgggttgcatatgttgcctt 11059907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 25374288 - 25374369
Alignment:
Q  139 ataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcctatcctat 220  Q
    |||||||||||||||||  ||||||||||| |  | |||||||||||||||| ||| ||| ||||  | ||||| |||||||    
T  25374288 ataaggcaagaagtaggttaggcatcaaggggtacggagacatcccaactagattggcaccccaccaggactccaatcctat 25374369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 359 - 597
Target Start/End: Complemental strand, 21365064 - 21364826
Alignment:
Q  359 tatccctagagaagtcaaaagctaacagaggaggtaatctgtcaaaccaagcagtgtcaggaaagtcattttcgaggaagccagccaacggttccgaaga 458  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||| | |||||||||||||||||| |||||||||    
T  21365064 tatccctagagaagtcgaaagccaacagaggaggtaatctgtcaaaccaagcagtgtcagacaagtcatgtccgaggaagccagccaacgattccgaaga 21364965  T
Q  459 cggaaaggaatgagatccatgtccttgaaagcaagaacaaccgcagatgaatcactttccacccagatattccagcaaataatcttcatttggaattagg 558  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  21364964 cggaaaggaatgagatctgtgtccttgaaagcaagaacaaccgcagatgaatcactttccacccagatattccagtaaataatctttatttggaattagg 21364865  T
Q  559 tagaggaccctgggaacgggttgcatatgttgcctttgt 597  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  21364864 tagaggaccctgggagcgggttgcatatgttgcctttgt 21364826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 29501315 - 29501223
Alignment:
Q  137 ggataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcctatcctataccgactac 229  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||| |||||    
T  29501315 ggataagacaagaagtaggggaggcatcaaggagcccagagacatcccaactacgttggcaccccactggaactcctatcctataccaactac 29501223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 20495113 - 20495023
Alignment:
Q  139 ataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcctatcctataccgactac 229  Q
    ||||||||| ||||||  ||| |||||||||||  |||||||||| |||||||||| ||| ||||||| |||| ||| |||| ||| ||||    
T  20495113 ataaggcaaaaagtagatgagacatcaaggagcttagagacatcctaactaggttggcaccccactgggactcttattctatgccgtctac 20495023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 29501081 - 29501033
Alignment:
Q  359 tatccctagagaagtcaaaagctaacagaggaggtaatctgtcaaacca 407  Q
    |||| ||||||||||| ||||| ||||||||||||||| | ||||||||    
T  29501081 tatctctagagaagtcgaaagccaacagaggaggtaatttatcaaacca 29501033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 4e-89; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 359 - 601
Target Start/End: Complemental strand, 22717271 - 22717029
Alignment:
Q  359 tatccctagagaagtcaaaagctaacagaggaggtaatctgtcaaaccaagcagtgtcaggaaagtcattttcgaggaagccagccaacggttccgaaga 458  Q
    |||||||||||||||| ||||| |||| ||||||||||||||||||| |||||||||| |  ||||||| | ||||| ||||||||||||||||||||||    
T  22717271 tatccctagagaagtcgaaagccaacaaaggaggtaatctgtcaaacaaagcagtgtctgacaagtcatgtccgagggagccagccaacggttccgaaga 22717172  T
Q  459 cggaaaggaatgagatccatgtccttgaaagcaagaacaaccgcagatgaatcactttccacccagatattccagcaaataatcttcatttggaattagg 558  Q
    |||||||||||||||| | |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  22717171 cggaaaggaatgagattcgtgtccttgaaagcaagaacagccgcaaatgaatcactttccacccagatattccagtaaataatcttcatttggaattaag 22717072  T
Q  559 tagaggaccctgggaacgggttgcatatgttgcctttgtcgcc 601  Q
    |||||||||||| || |||||||||||||||||||||| ||||    
T  22717071 tagaggaccctgagagcgggttgcatatgttgcctttgccgcc 22717029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 22717495 - 22717403
Alignment:
Q  137 ggataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcctatcctataccgactac 229  Q
    ||||||| |||||||||||||||||||||||||| ||  ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||    
T  22717495 ggataagacaagaagtaggggaggcatcaaggaggccgcagacatcccaactaggttggcaccccactggaacttctatcctataccgactac 22717403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 535 - 596
Target Start/End: Original strand, 20399004 - 20399065
Alignment:
Q  535 aaataatcttcatttggaattaggtagaggaccctgggaacgggttgcatatgttgcctttg 596  Q
    |||||||||||||||||||||||| |||||||||||  | ||||||||||||||||||||||    
T  20399004 aaataatcttcatttggaattagggagaggaccctgtcagcgggttgcatatgttgcctttg 20399065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 19700948 - 19701029
Alignment:
Q  137 ggataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcctatcct 218  Q
    ||||||||||||||| |||  || ||||| ||| |||| ||||||||||||||||||| |||||| || |||||||||||||    
T  19700948 ggataaggcaagaagaaggttagacatcatggaacccaaagacatcccaactaggttgtcactccgctagaactcctatcct 19701029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 13220819 - 13220741
Alignment:
Q  138 gataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcctatc 216  Q
    ||||||||||||||||| | |  |||||||||||||||||||||| ||||||| ||| ||| | ||| | |||||||||    
T  13220819 gataaggcaagaagtagagtatacatcaaggagcccagagacatcacaactagattggcaccctactcggactcctatc 13220741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 359 - 601
Target Start/End: Complemental strand, 14646842 - 14646600
Alignment:
Q  359 tatccctagagaagtcaaaagctaacagaggaggtaatctgtcaaaccaagcagtgtcaggaaagtcattttcgaggaagccagccaacggttccgaaga 458  Q
    |||||||||||||||| ||||| |||||||||||||||||||||| ||||||| ||||||  ||||||| | ||||| ||||||||||||||||||||||    
T  14646842 tatccctagagaagtcgaaagccaacagaggaggtaatctgtcaacccaagcaatgtcagacaagtcatgtccgagggagccagccaacggttccgaaga 14646743  T
Q  459 cggaaaggaatgagatccatgtccttgaaagcaagaacaaccgcagatgaatcactttccacccagatattccagcaaataatcttcatttggaattagg 558  Q
     ||||||| ||||||||  |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||    
T  14646742 tggaaaggtatgagatctgtgtccttgaaagcaagaacagccgcagatgaatcactttccacccaaatattccagtcaataatcttcatttggaattagg 14646643  T
Q  559 tagaggaccctgggaacgggttgcatatgttgcctttgtcgcc 601  Q
    || ||||||||| || |||||||||||||||||||||| ||||    
T  14646642 taaaggaccctgagagcgggttgcatatgttgcctttgccgcc 14646600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 421 - 601
Target Start/End: Original strand, 10765167 - 10765347
Alignment:
Q  421 aagtcattttcgaggaagccagccaacggttccgaagacggaaaggaatgagatccatgtccttgaaagcaagaacaaccgcagatgaatcactttccac 520  Q
    ||||||| | |||||||| |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||  |||||||||||||||||||||    
T  10765167 aagtcatgtccgaggaagtcagccaacggttccgaagacggaaaggaatgagatttgtgtccttgaaagcaagaacaggcgcagatgaatcactttccac 10765266  T
Q  521 ccagatattccagcaaataatcttcatttggaattaggtagaggaccctgggaacgggttgcatatgttgcctttgtcgcc 601  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  10765267 ccagatattccagtaaataatcttcatttggaattaggttgaggaccctgggagcgggttgcatatgttgcctttgtcgcc 10765347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 359 - 512
Target Start/End: Original strand, 14268024 - 14268177
Alignment:
Q  359 tatccctagagaagtcaaaagctaacagaggaggtaatctgtcaaaccaagcagtgtcaggaaagtcattttcgaggaagccagccaacggttccgaaga 458  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||  ||||||| | ||||| ||||||||||||||||  ||||    
T  14268024 tatccctagagaagtcgaaagccaacagaggaggtaatctgtcaaaccaagcggtgtcagacaagtcatgtccgagggagccagccaacggttctaaaga 14268123  T
Q  459 cggaaaggaatgagatccatgtccttgaaagcaagaacaaccgcagatgaatca 512  Q
    |||||||||||||||||| |||||||||||||||||||||||||| | ||||||    
T  14268124 cggaaaggaatgagatccgtgtccttgaaagcaagaacaaccgcaaacgaatca 14268177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 10758937 - 10759025
Alignment:
Q  141 aaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcctatcctataccgactac 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  10758937 aaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttggcaccccactggaactcctatcctataccgactac 10759025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 14267789 - 14267881
Alignment:
Q  137 ggataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcctatcctataccgactac 229  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||  ||||||||||||||||| ||||||||||||    
T  14267789 ggataaggcaagaagtagggaaggcatcaaggaggccagagacatctcaactaggttggcatcccactggaactcctatcttataccgactac 14267881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 535 - 596
Target Start/End: Original strand, 14268180 - 14268241
Alignment:
Q  535 aaataatcttcatttggaattaggtagaggaccctgggaacgggttgcatatgttgcctttg 596  Q
    ||||||| ||||||||||||||||||||| |||| | || ||||||||||||||||||||||    
T  14268180 aaataattttcatttggaattaggtagagaaccccgagagcgggttgcatatgttgcctttg 14268241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 15736220 - 15736137
Alignment:
Q  137 ggataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcctatcctat 220  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||| ||| ||||||| ||| ||| ||| |||  ||||||||    
T  15736220 ggataaggcaagaagtagatgagacatcaaggagcccagagacatctcaattaggttggcaccccattgggacttatatcctat 15736137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 359 - 417
Target Start/End: Original strand, 10759169 - 10759227
Alignment:
Q  359 tatccctagagaagtcaaaagctaacagaggaggtaatctgtcaaaccaagcagtgtca 417  Q
    ||||| |||||||||| ||||| |||| |||||||||| ||||||||||||||||||||    
T  10759169 tatccttagagaagtcgaaagccaacataggaggtaatttgtcaaaccaagcagtgtca 10759227  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 45396932 - 45397007
Alignment:
Q  137 ggataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcc 212  Q
    |||||| ||||||| ||||  ||||||||||||| ||||| | ||||||||||||||| ||| | || ||||||||    
T  45396932 ggataaagcaagaaataggttaggcatcaaggaggccagaaatatcccaactaggttggcacccaaccggaactcc 45397007  T

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Target: chr7 (Bit Score: 158; Significance: 9e-84; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 359 - 596
Target Start/End: Original strand, 45484976 - 45485212
Alignment:
Q  359 tatccctagagaagtcaaaagctaacagaggaggtaatctgtcaaaccaagcagtgtcaggaaagtcattttcgaggaagccagccaacggttccgaaga 458  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||| |  |||| ||||||||||||||||| ||||    
T  45484976 tatccctagagaagtcgaaagccaacagaggaggtaatctgtcaaaccaagcagtgtcagacaagtcatgtcggagggagccagccaacggttcc-aaga 45485074  T
Q  459 cggaaaggaatgagatccatgtccttgaaagcaagaacaaccgcagatgaatcactttccacccagatattccagcaaataatcttcatttggaattagg 558  Q
    |||||||||||||||||| ||||||||||||||||||||  |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||     
T  45485075 cggaaaggaatgagatccgtgtccttgaaagcaagaacagacgcaaatgaatcactttccacccagatattctagtaaataatcttcatttggaattaga 45485174  T
Q  559 tagaggaccctgggaacgggttgcatatgttgcctttg 596  Q
    ||||||||| ||| | ||||||||||||||||||||||    
T  45485175 tagaggaccttggaagcgggttgcatatgttgcctttg 45485212  T

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Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 359 - 542
Target Start/End: Complemental strand, 7115827 - 7115644
Alignment:
Q  359 tatccctagagaagtcaaaagctaacagaggaggtaatctgtcaaaccaagcagtgtcaggaaagtcattttcgaggaagccagccaacggttccgaaga 458  Q
    |||||||||||||||| ||||  ||| ||||||||||| ||||||||||||||||||||   ||||||| | ||||| ||||||||||||||||||||||    
T  7115827 tatccctagagaagtcgaaagtcaacggaggaggtaatatgtcaaaccaagcagtgtcaaacaagtcatgtccgagggagccagccaacggttccgaaga 7115728  T
Q  459 cggaaaggaatgagatccatgtccttgaaagcaagaacaaccgcagatgaatcactttccacccagatattccagcaaataatc 542  Q
    |||||||||||||||||  ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||    
T  7115727 cggaaaggaatgagatctgtgtgcttgaaagcaagaacagccgcaaatgaatcactttccacccagatattccagtaaataatc 7115644  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 7116065 - 7115973
Alignment:
Q  137 ggataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcctatcctataccgactac 229  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||| || || ||||||||||||||||||||||||    
T  7116065 ggataaggcaagaagtaggggaggcatcaaggaaccaagagacatcccaactaggttggcaccccgcttgaactcctatcctataccgactac 7115973  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 45484746 - 45484836
Alignment:
Q  138 gataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcctatcctataccgacta 228  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||  ||||||  ||| | |||||||||||||||||||| ||||||    
T  45484746 gataaggcaagaaataggggaggcatcaaggaggccagagacatcccagttaggtttgcaccctactggaactcctatcctatatcgacta 45484836  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 12130112 - 12130032
Alignment:
Q  137 ggataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcctatcc 217  Q
    ||||||||||||||| |||  || |||||||||||||||||||||||||||||||||  ||| || |||||| ||||||||    
T  12130112 ggataaggcaagaagaaggttagacatcaaggagcccagagacatcccaactaggttagcaccccgctggaaatcctatcc 12130032  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 8612631 - 8612718
Alignment:
Q  138 gataaggcaagaagtaggggaggcatcaaggagc-ccagagacatcccaactaggttgacactccactggaactcctatcctataccg 224  Q
    ||||||||||||||||||  |||||||||||||| ||||| ||||||||||||||||||||| | || | | |||||||||| |||||    
T  8612631 gataaggcaagaagtaggttaggcatcaaggagcgccagaaacatcccaactaggttgacacccaaccgaagctcctatcctctaccg 8612718  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 7324415 - 7324359
Alignment:
Q  139 ataaggcaagaagtaggggaggcatcaaggag-cccagagacatcccaactaggttg 194  Q
    ||||||||| |||||||  |||||||||||||  ||||| |||||||||||||||||    
T  7324415 ataaggcaaaaagtaggttaggcatcaaggagtgccagaaacatcccaactaggttg 7324359  T

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Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 11070801 - 11070722
Alignment:
Q  137 ggataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcctatc 216  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| |||||||||| |||| |||||    
T  11070801 ggataaggcaagaagtaggtgagacatcaaggagcacagagacatcccaactaggttggcactccactgaaacttctatc 11070722  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 27095899 - 27095839
Alignment:
Q  139 ataaggcaagaagtaggggaggcatcaaggagc-ccagagacatcccaactaggttgacac 198  Q
    ||||||||| |||||||  |||||||||||||| ||||| |||||| ||||||||||||||    
T  27095899 ataaggcaaaaagtaggttaggcatcaaggagcgccagaaacatcctaactaggttgacac 27095839  T

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Target: scaffold0056 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 68532 - 68455
Alignment:
Q  152 taggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcctatcctataccgactac 229  Q
    |||| ||||||||||||| ||||| |||||||||||||||||| ||| |||||||||||| ||||||||||| |||||    
T  68532 taggtgaggcatcaaggatcccagtgacatcccaactaggttgtcaccccactggaactcgtatcctatacctactac 68455  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 24519954 - 24519873
Alignment:
Q  137 ggataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcctatcct 218  Q
    |||||||||||| || |||  || |||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||    
T  24519954 ggataaggcaaggagaaggttagacatcaaggagcccagagacatcccaactaggttggcaccccactggaactcatatcct 24519873  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 2522705 - 2522780
Alignment:
Q  137 ggataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcc 212  Q
    ||||||||||||||||||| ||| | |||||||||| ||||||||||||||||| ||| ||||||| |||||||||    
T  2522705 ggataaggcaagaagtaggtgagacgtcaaggagcctagagacatcccaactagattgccactccagtggaactcc 2522780  T

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Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 16601251 - 16601159
Alignment:
Q  137 ggataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcctatcctataccgactac 229  Q
    |||||||||| |||||||  |||||||||||||| ||||||||| |||||||||||||  |  || |||||||| ||||||||||||||||||    
T  16601251 ggataaggcaggaagtagacgaggcatcaaggagtccagagacaacccaactaggttggtatcccgctggaacttctatcctataccgactac 16601159  T

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Target: scaffold0020 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 122707 - 122787
Alignment:
Q  138 gataaggcaagaagtaggggaggcatcaaggagcccagagacatcccaactaggttgacactccactggaactcctatcct 218  Q
    |||||||||||||| |||  ||  |||||| ||  |||||||||||||||||||||| ||| | |||||||||||||||||    
T  122707 gataaggcaagaagaaggttagaaatcaagaagttcagagacatcccaactaggttggcaccctactggaactcctatcct 122787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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