View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4687-Insertion-5 (Length: 425)
Name: NF4687-Insertion-5
Description: NF4687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4687-Insertion-5 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 425
Target Start/End: Complemental strand, 24900046 - 24899628
Alignment:
| Q |
7 |
agcaagtaaattaaaaggtatgcaatgagaattcatccaagactttgaatgcaatttaagaatctcccttgctttctcctttgccttatttccactatca |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24900046 |
agcaagtaaattaaaaggtatgcaatgagaattcatccaagactttgaatgcaatttaagaatctcccttgctttctcctttgccttatttccactatca |
24899947 |
T |
|
| Q |
107 |
acttgaagaaccaaacaaagcttagcaacaataccaattctcaacatttcttgaataacaaaatgtgtagcagaaaatcttgaaactgatagaagaatcc |
206 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
24899946 |
acttgaagaaccaaacaaagcttagcaacaacaccaattctcaacatttcttgaacaacaaaatgtgtagcagaaaatcttgaaacagatagaagaatac |
24899847 |
T |
|
| Q |
207 |
tcacagctctatcattagccattgttgaaaccctcagaatcttctttgaaacaatagctaaaccacatccatggcttagaagttcaaatcttccatcagc |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
24899846 |
tcacagctctatcattagccattgttgaaaccctcaaaatcttctttgaaacaatagctaaaccacatccatggattaaaagttcaaatcttccatcagc |
24899747 |
T |
|
| Q |
307 |
acattgacataacatctccaaaagcaccaaaatcatctcacatggcttcctctctttgcaatcaagaagaatttctatcaaagcataaacacaacctgat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
24899746 |
acattgacataacatctccaaaagcaccaaaatcatctcacatggctttctttctttgcaatcaagaagaagttctatcaaagcaaaaacacaacctgat |
24899647 |
T |
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| Q |
407 |
tcaattgcttttactctat |
425 |
Q |
| |
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||||||||||||||||||| |
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| T |
24899646 |
tcaattgcttttactctat |
24899628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 7 - 425
Target Start/End: Original strand, 24889921 - 24890339
Alignment:
| Q |
7 |
agcaagtaaattaaaaggtatgcaatgagaattcatccaagactttgaatgcaatttaagaatctcccttgctttctcctttgccttatttccactatca |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24889921 |
agcaagtaaattaaaaggtatgcaatgagaattcatccaagactttgaatgcaatttaagaatctcccttgctttctcctttgccttatttccactatca |
24890020 |
T |
|
| Q |
107 |
acttgaagaaccaaacaaagcttagcaacaataccaattctcaacatttcttgaataacaaaatgtgtagcagaaaatcttgaaactgatagaagaatcc |
206 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
24890021 |
acttgaagaaccaaacaaagcttagcaacaacaccaattctcaacatttcttgaacaacaaaatgtgtagcagaaaatcttgaaacagatagaagaattc |
24890120 |
T |
|
| Q |
207 |
tcacagctctatcattagccattgttgaaaccctcagaatcttctttgaaacaatagctaaaccacatccatggcttagaagttcaaatcttccatcagc |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |
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| T |
24890121 |
tcacagctctatcattagccattgttgaaaccctcaaaatcttctttgaaacaatagctaaacctcatccatggtttattagttcaaatcttccatcagc |
24890220 |
T |
|
| Q |
307 |
acattgacataacatctccaaaagcaccaaaatcatctcacatggcttcctctctttgcaatcaagaagaatttctatcaaagcataaacacaacctgat |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24890221 |
acattgacataacatctccaaaagcaccaaaatcatctcacatggctttctttctttgcaatcaagaagaagttctatcaaagcataaacacaacctgat |
24890320 |
T |
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| Q |
407 |
tcaattgcttttactctat |
425 |
Q |
| |
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||||||||||||||||||| |
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| T |
24890321 |
tcaattgcttttactctat |
24890339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 7 - 425
Target Start/End: Complemental strand, 24907505 - 24907087
Alignment:
| Q |
7 |
agcaagtaaattaaaaggtatgcaatgagaattcatccaagactttgaatgcaatttaagaatctcccttgctttctcctttgccttatttccactatca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24907505 |
agcaagtaaattaaaaggtatgcaatgagaattcatccaagactttgaatgcaatttaagaatctcccttgctttctcctttgccttatttccactatca |
24907406 |
T |
|
| Q |
107 |
acttgaagaaccaaacaaagcttagcaacaataccaattctcaacatttcttgaataacaaaatgtgtagcagaaaatcttgaaactgatagaagaatcc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
24907405 |
acttgaagaaccaaacaaagcttagcaacaacaccaattctcaacatttcttgaacaacaaaatgtgtagcagaaaatcttgaaacagatagaagaattc |
24907306 |
T |
|
| Q |
207 |
tcacagctctatcattagccattgttgaaaccctcagaatcttctttgaaacaatagctaaaccacatccatggcttagaagttcaaatcttccatcagc |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |
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| T |
24907305 |
tcacagctctatcattagccattgttgaaaccctcaaaatcttctttgaaacaatagctaaaccgcatccatggtttaagagttcaaatcttccatcagc |
24907206 |
T |
|
| Q |
307 |
acattgacataacatctccaaaagcaccaaaatcatctcacatggcttcctctctttgcaatcaagaagaatttctatcaaagcataaacacaacctgat |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24907205 |
acattgacataacatctccaaaagcaccaaaatcatctcacatggctttctttctttgcaatcaagaagaagttctatcaaagcataaacacaacctgat |
24907106 |
T |
|
| Q |
407 |
tcaattgcttttactctat |
425 |
Q |
| |
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||||||||||||||||||| |
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| T |
24907105 |
tcaattgcttttactctat |
24907087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 62 - 260
Target Start/End: Complemental strand, 43263646 - 43263448
Alignment:
| Q |
62 |
ttaagaatctcccttgctttctcctttgccttatttccactatcaacttgaagaaccaaacaaagcttagcaacaataccaattctcaacatttcttgaa |
161 |
Q |
| |
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||||| |||||||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||| |||| ||||| | | | ||||||||||| |
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| T |
43263646 |
ttaagtatctcccttgctttctccttagtcttacttccacaatcaacttgaagaaccaaacaaagcttagccacaacaccaagtttaagcatttcttgaa |
43263547 |
T |
|
| Q |
162 |
taacaaaatgtgtagcagaaaatcttgaaactgatagaagaatcctcacagctctatcattagccattgttgaaaccctcagaatcttctttgaaacaa |
260 |
Q |
| |
|
|||| | | || ||||| ||||||||||| || | |||||||| ||||| |||||||| || | ||| |||||||| ||||||||||| ||||||| |
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|
| T |
43263546 |
caacattaggagttgcagagaatcttgaaacagacaacagaatccttacagccctatcattcgcaagtgtcgaaacccttagaatcttcttagaaacaa |
43263448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 281 - 423
Target Start/End: Complemental strand, 5285450 - 5285308
Alignment:
| Q |
281 |
cttagaagttcaaatcttccatcagcacattgacataacatctccaaaagcaccaaaatcatctcacatggcttcctctctttgcaatcaagaagaattt |
380 |
Q |
| |
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|||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || |||| |||| |||||||| || |
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| T |
5285450 |
cttaaaagtttaaatcttccatcagcacatcgacataacatctccaaaagcaccaaaatcatctcgcatggctttcttcctttccaatgaagaagaagtt |
5285351 |
T |
|
| Q |
381 |
ctatcaaagcataaacacaacctgattcaattgcttttactct |
423 |
Q |
| |
|
| | ||| || |||||||| ||||||| | |||| ||||||| |
|
|
| T |
5285350 |
cggttaaaacagaaacacaatctgattccactgctcttactct |
5285308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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