View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4687-Insertion-6 (Length: 280)
Name: NF4687-Insertion-6
Description: NF4687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4687-Insertion-6 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 14467534 - 14467805
Alignment:
| Q |
8 |
gcttcaaccccaactacatccctcaaagcaaaaacgtagtcttcgagcgacaattttcctccccaaaaattcttacacacctacaaattccaatgtgatt |
107 |
Q |
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| T |
14467534 |
gcttcaactccaactacatccttcaaagcaaaaacgtagtcttcgagcgacaattttcctccccaaaaattcttacacacctacaaattccaatgtgatt |
14467633 |
T |
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| Q |
108 |
gaatttaattttagcgaataacacaagtgtaagtgaacattcattacaacgataaatctaagccaaaatactagaaaagaagattttgatctctatatgg |
207 |
Q |
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| T |
14467634 |
gaatttaattttagcaaataacacagttgtaagtgaacattcactacaacaataaatctaagccaaactactagaaaagaagattttgatctctatatgg |
14467733 |
T |
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| Q |
208 |
tacaagtttcccgtttggtaacaggttcaattttgacacatgtgaatatgtatttcacagtggattcaatcta |
280 |
Q |
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| T |
14467734 |
tccaagtttcccgtttggtaacaggttggaacttgacatatgtgaatat-tatttcacagttgattcaatcta |
14467805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 14458650 - 14458805
Alignment:
| Q |
7 |
agcttcaaccccaactacatccctcaaagcaaaaacgtagtcttcgagcgacaattttcctccccaaaaattcttacacacctacaaattccaatgtgat |
106 |
Q |
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| T |
14458650 |
agcttcaactccaactacatccttcaaagcaaaaacgtagtcttcgagcggcaattttcctccccaaaaattcttacacacctacaaattccaatgtgat |
14458749 |
T |
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| Q |
107 |
tgaatttaattttagcgaataacacaagtgtaagtgaacattcattacaacgataa |
162 |
Q |
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| T |
14458750 |
tgaatttagttttagcaaataacacaattgtaagtgaacattcattacaacaataa |
14458805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 14458826 - 14458866
Alignment:
| Q |
146 |
attcattacaacgataaatctaagccaaaatactagaaaag |
186 |
Q |
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| T |
14458826 |
attcattacaacaataaatctaagccaacatactagaaaag |
14458866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 30 - 175
Target Start/End: Original strand, 12069347 - 12069492
Alignment:
| Q |
30 |
tcaaagcaaaaacgtagtcttcgagcgacaattttcctccccaaaaattcttacacacctacaaattccaatgtgattgaatttaattttagcgaataac |
129 |
Q |
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| T |
12069347 |
tcaaagcaaaaacgttgttttctaacgacaattttcctccccaaaaattctgacacacctacaaattccaatgcgattgaatttaattttagcaaaaaac |
12069446 |
T |
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| Q |
130 |
acaagtgtaagtgaacattcattacaacgataaatctaagccaaaa |
175 |
Q |
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| T |
12069447 |
acaagtgaaagtgaatattcattacaacaataaatctaagccaaaa |
12069492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 12069487 - 12069536
Alignment:
| Q |
70 |
ccaaaaattcttacacacctacaaattccaatgtgattgaatttaatttt |
119 |
Q |
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| T |
12069487 |
ccaaaaattctgacacacctacaaattccaatgtgattgaatttaatttt |
12069536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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