View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4687_high_4 (Length: 233)
Name: NF4687_high_4
Description: NF4687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4687_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 40964315 - 40964511
Alignment:
| Q |
18 |
ggattaacatatcattagtcttcgctttcgtgggtaaactacctttgtaggtttgagcatttcccttttgagattatctcaagagaacaaaccctccaaa |
117 |
Q |
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| T |
40964315 |
ggattaacatgtcattagtcttcgctttcgtgggtaaactacctttgtaggtttgagcatttcccttttgagattatctcaagtgaacaaaccctccaaa |
40964414 |
T |
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| Q |
118 |
ccactacaagattacgcagttcctctatgtcaattcagaattcagtttaatagacgcaagaagatcatactcttatctgttatagccataaacaacgt |
215 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40964415 |
ccactaaaagattacgcagttcctctatgtc-attcagaattcagtttaatagacgcaagaagatcatactcttatctgttatagccataaacaacgt |
40964511 |
T |
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