View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4687_low_3 (Length: 581)
Name: NF4687_low_3
Description: NF4687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4687_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 12 - 559
Target Start/End: Original strand, 46709188 - 46709736
Alignment:
| Q |
12 |
ataatactctccatagaattgtcaactagcaacattcaaagttgagagataagcacgttgcattgaactcaaacatacccatcttcattactgtcaccgt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46709188 |
ataatactctccatagaattgtcaactagcaacattcaaagttgagagataagcacgttgcattgaactcaaccatacccatcttcattactgtcaccgt |
46709287 |
T |
|
| Q |
112 |
tcaaattttccatcttcctttgctaaaaaagacacactcaagaatgcacatagcaatttctattgtccatgtcctttgtctttgcatgcaatttgtcatg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46709288 |
tcaaattttccatcttcctttgctaaaaaagacaaactcaagaatgcacatagcaatttctattgtccatgtcctttgtctttgcatgcaatttgtcatg |
46709387 |
T |
|
| Q |
212 |
aaaagcccaagcccaatgggcccaatgaaccgtgttgccatgtcaccgacacgcaacgtcattatcgttaaaaaacaattaaaaaagcgtgtaagaaaca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46709388 |
aaaagcccaagcccaatgggcccaatgaaccgtgttgccacgtcaacgacacgcaacgtcattatcgttaaaaaacaattaaaaaagcgtgtaagaaaca |
46709487 |
T |
|
| Q |
312 |
aacccaacgaaaacgccacgtgtacgttcttatccttttccccgttaaaaacgctataaaaacacaatggtttaggacaatctcaaaccctaccaacaaa |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46709488 |
aacccaacgaaaacgccacgtgtacgttcttatccttttccccattaaaaacgctataaaaacacaatggtttaggacaatctcaaaccctaccaacaaa |
46709587 |
T |
|
| Q |
412 |
tcaaaccgtttttaacagaaat-aaaaaatatctcaaaagctctcaaaaatggcttcaacaatgataccaattcaagcgtgtgccggatccggtcaccgg |
510 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46709588 |
tcaaaccgtttttaacagaaataaaaaaatatctcaaaagctctcaaaaatggcttcaacaatgataccaattcaagcgtgtgccggatccggtcaccgg |
46709687 |
T |
|
| Q |
511 |
attccagatcccgatcgccggagaaattcctcctccactaactggtgga |
559 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46709688 |
attccagatcccgatcgccggagaaattcctcctccactaactggtgga |
46709736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University