View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4688-Insertion-1 (Length: 892)

Name: NF4688-Insertion-1
Description: NF4688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4688-Insertion-1
NF4688-Insertion-1
[»] chr2 (11 HSPs)
chr2 (8-678)||(17245114-17245802)
chr2 (675-892)||(17244525-17244743)
chr2 (632-678)||(22963398-22963444)
chr2 (632-678)||(22998033-22998079)
chr2 (632-674)||(19313850-19313892)
chr2 (632-674)||(33902066-33902108)
chr2 (633-674)||(41465508-41465549)
chr2 (634-678)||(4264236-4264280)
chr2 (635-674)||(13711465-13711504)
chr2 (636-674)||(36641988-36642026)
chr2 (634-671)||(39788588-39788625)
[»] chr4 (15 HSPs)
chr4 (809-882)||(52451917-52451990)
chr4 (520-592)||(52451509-52451581)
chr4 (631-674)||(28003157-28003200)
chr4 (634-674)||(17272011-17272051)
chr4 (634-674)||(29584369-29584409)
chr4 (634-674)||(32912751-32912791)
chr4 (634-674)||(34361662-34361702)
chr4 (634-674)||(38812268-38812308)
chr4 (634-669)||(37663915-37663950)
chr4 (635-674)||(51204580-51204619)
chr4 (632-671)||(55241278-55241317)
chr4 (636-674)||(20097499-20097537)
chr4 (636-674)||(27396618-27396656)
chr4 (632-674)||(38811811-38811853)
chr4 (632-674)||(39397916-39397958)
[»] chr6 (5 HSPs)
chr6 (634-674)||(19631749-19631789)
chr6 (634-674)||(8513233-8513273)
chr6 (635-674)||(20768087-20768126)
chr6 (636-674)||(30353502-30353540)
chr6 (637-674)||(25440961-25440998)
[»] chr7 (10 HSPs)
chr7 (631-677)||(10359357-10359403)
chr7 (631-671)||(5657630-5657670)
chr7 (634-674)||(26524473-26524513)
chr7 (632-671)||(8861258-8861297)
chr7 (635-674)||(24211717-24211756)
chr7 (634-669)||(30055501-30055536)
chr7 (633-671)||(6546493-6546531)
chr7 (632-674)||(23402379-23402421)
chr7 (633-674)||(12165726-12165767)
chr7 (633-674)||(37109846-37109887)
[»] chr5 (6 HSPs)
chr5 (636-678)||(25501057-25501099)
chr5 (634-674)||(8742022-8742062)
chr5 (634-674)||(27330306-27330346)
chr5 (632-674)||(14409461-14409503)
chr5 (633-674)||(7693229-7693270)
chr5 (634-671)||(39572819-39572856)
[»] chr1 (4 HSPs)
chr1 (632-678)||(3309142-3309188)
chr1 (633-674)||(38823209-38823250)
chr1 (634-674)||(1547283-1547323)
chr1 (633-671)||(43579241-43579279)
[»] chr8 (5 HSPs)
chr8 (633-674)||(15009240-15009281)
chr8 (634-674)||(1150256-1150296)
chr8 (634-674)||(7998362-7998402)
chr8 (634-672)||(39099262-39099300)
chr8 (633-674)||(13307621-13307662)
[»] chr3 (6 HSPs)
chr3 (632-672)||(4015449-4015489)
chr3 (634-674)||(40640642-40640682)
chr3 (632-672)||(42204340-42204380)
chr3 (634-678)||(45879502-45879546)
chr3 (634-672)||(11466815-11466853)
chr3 (633-674)||(51213126-51213167)
[»] scaffold0061 (1 HSPs)
scaffold0061 (636-674)||(43959-43997)
[»] scaffold0017 (1 HSPs)
scaffold0017 (636-674)||(154790-154828)


Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 8 - 678
Target Start/End: Complemental strand, 17245802 - 17245114
Alignment:
Q  8 aaacgtaggaacaaactttaaccctttgaccaaattgtcaacttcctgttcaataaacaataacacacttaattaagttaaattaatatcgttttatagc 107  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || |||||    
T  17245802 aaacgttggaacaaactttaaccctttgaccaaattgtcaacttcctgttcaataaacaataacacacttaattaagataaattaatattgattcatagc 17245703  T
Q  108 taaattattaataaagc--gcgattgag------tggttaacgagtttcagtt-aaatagattagaagaaccctaattcaaatcttatcgggaacaattc 198  Q
    |||||||  ||||||||  |||||||||      ||||||||| ||||||||| ||||| |  || |||||||||||| |||||||||| |||||  | |    
T  17245702 taaattaacaataaagcaagcgattgagcttaagtggttaacgggtttcagtttaaatataccaggagaaccctaattaaaatcttatcaggaacggtcc 17245603  T
Q  199 ttggtaagattctatttacct---------acttagaattatcaaagaccattttcactgagaagcttagggttaataaacaaaaattaaaggaacaata 289  Q
    ||||||||||| |||||||||         |||| ||||||||||||||||||||||| |||||| ||| |||||||||||||||  |||||||||||||    
T  17245602 ttggtaagattatatttacctcttacccgaacttcgaattatcaaagaccattttcaccgagaagtttacggttaataaacaaaatataaaggaacaata 17245503  T
Q  290 aaaaagagaagaaccaaaatatgttagaaattacctctgtgatatttgcttgagaatttgtatcataatatttgacaagttctaggacatagatgatgcc 389  Q
    ||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  17245502 aaaaaggtaagaaccaaaatatgttagaaagtacctctgtgatatttgcttgagaatttgtgtcataatatttgacaagctctaggacataggtgatgcc 17245403  T
Q  390 atattgagttactagggatgttatccttggttgatcagaaggtggataaaaggaaagaatcaatggtggcttgttcaatagaagcatgccttcaacataa 489  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17245402 atattgagttactagggatgttatccttggatgatcagaaggtggataaaaggaaagaatcaatggtggcttgttcaatagaagcatgccttcaacataa 17245303  T
Q  490 tctgctccattggagtcatttcttctattgaatgagattaaatgttcttgatctgtggaaaatgcagaaaagtcgttgtaaattagacgcaaccacttta 589  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17245302 tctgctccattggagtcatttcttctatcaaatgagattaaatgttcttgatctgtggaaaatgcggaaaagtcgttgtaaattagacgcaaccacttta 17245203  T
Q  590 cctgcaaacaatcaaacaaagatacgttgagcttatttatggatggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 678  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  17245202 cctgcaaacaatcaaacaaagatctgttgagcttatttatggatggaaaattctatggtgaagtcgcgagaatgacttttctggtaaag 17245114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 675 - 892
Target Start/End: Complemental strand, 17244743 - 17244525
Alignment:
Q  675 aaaggttattattgaaccgcaactttgataaggaattcatgtcacggagnnnnnnnn-ctttctcaattgattattgatagttttaaacatacatatgtg 773  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||         ||||| ||||||||||||||||||||||||||||||||||||    
T  17244743 aaaggttattattgaaccgcaactttcataaggaattcatgtcacggagattttttttctttcacaattgattattgatagttttaaacatacatatgtg 17244644  T
Q  774 tgaatgaaaaagagatgataatacttgccctagttggtgcaggtccaagaagtattcttgctctggttatcactccaaattgacctagtcctccaagaac 873  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17244643 tgaacgaaaaagagatgataatacttgccctagttggtgcaggtccaagaagtattcttgctctggttatcactccaaattgacctagtcctccaagaac 17244544  T
Q  874 ggcataaaacacctctgag 892  Q
    ||||||||| |||||||||    
T  17244543 ggcataaaatacctctgag 17244525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 632 - 678
Target Start/End: Original strand, 22963398 - 22963444
Alignment:
Q  632 atggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 678  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  22963398 atggaaaattttatggtgaagtcataagaatgacttttctggtaaag 22963444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 632 - 678
Target Start/End: Complemental strand, 22998079 - 22998033
Alignment:
Q  632 atggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 678  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  22998079 atggaaaattttatggtgaagtcataagaatgacttttctggtaaag 22998033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 632 - 674
Target Start/End: Original strand, 19313850 - 19313892
Alignment:
Q  632 atggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  19313850 atggaaaattctatggtgaagtcattagaatgacttttctggt 19313892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 632 - 674
Target Start/End: Original strand, 33902066 - 33902108
Alignment:
Q  632 atggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  33902066 atggaaaattctatgatgaagtcgttagaatgacttttctggt 33902108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 674
Target Start/End: Original strand, 41465508 - 41465549
Alignment:
Q  633 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  41465508 tggaaaattctatggtgaagtcatgagaatgacttttctggt 41465549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 634 - 678
Target Start/End: Complemental strand, 4264280 - 4264236
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 678  Q
    ||||||||||||||||||||| | | |||||||||||||||||||    
T  4264280 ggaaaattctatggtgaagtcatcataatgacttttctggtaaag 4264236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 674
Target Start/End: Original strand, 13711465 - 13711504
Alignment:
Q  635 gaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  13711465 gaaaattctatggtgaagtcatcagaatgacttttctggt 13711504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 636 - 674
Target Start/End: Original strand, 36641988 - 36642026
Alignment:
Q  636 aaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  36641988 aaaattctatggtgaagtcatgagaatgacttttctggt 36642026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 671
Target Start/End: Complemental strand, 39788625 - 39788588
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttct 671  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  39788625 ggaaaattttatggtgaagtcataagaatgacttttct 39788588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 809 - 882
Target Start/End: Original strand, 52451917 - 52451990
Alignment:
Q  809 ggtgcaggtccaagaagtattcttgctctggttatcactccaaattgacctagtcctccaagaacggcataaaa 882  Q
    |||||||||||||||  ||||||||||| |||||| |  |||||||| ||||| ||||||||||| ||||||||    
T  52451917 ggtgcaggtccaagagctattcttgctcgggttataatcccaaattggcctagacctccaagaaccgcataaaa 52451990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 592
Target Start/End: Original strand, 52451509 - 52451581
Alignment:
Q  520 aatgagattaaatgttcttgatctgtggaaaatgcagaaaagtcgttgtaaattagacgcaaccactttacct 592  Q
    |||||||||||||||||||| |||   ||||||||||| ||||||||||||| || ||| | |||||||||||    
T  52451509 aatgagattaaatgttcttggtctccagaaaatgcagagaagtcgttgtaaagtaaacggagccactttacct 52451581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 631 - 674
Target Start/End: Complemental strand, 28003200 - 28003157
Alignment:
Q  631 gatggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  28003200 gatggaaaattctatggtgaagtcatgagaatgacttttctggt 28003157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 634 - 674
Target Start/End: Original strand, 17272011 - 17272051
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  17272011 ggaaaattctatggtgaagtcgtgggaatgacttttctggt 17272051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 634 - 674
Target Start/End: Complemental strand, 29584409 - 29584369
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  29584409 ggaaaattctatggtgaagtcgtgggaatgacttttctggt 29584369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 634 - 674
Target Start/End: Complemental strand, 32912791 - 32912751
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  32912791 ggaaaattctatggtgaagtcataagaatgacttttttggt 32912751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 634 - 674
Target Start/End: Complemental strand, 34361702 - 34361662
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  34361702 ggaaaattctatggtgaagtcataagaatgacttttttggt 34361662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 634 - 674
Target Start/End: Complemental strand, 38812308 - 38812268
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  38812308 ggaaaattctatggtgaagtcatgagaatgacttttctggt 38812268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 669
Target Start/End: Complemental strand, 37663950 - 37663915
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgactttt 669  Q
    ||||||||||||||||||||| ||||||||||||||    
T  37663950 ggaaaattctatggtgaagtcataagaatgactttt 37663915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 674
Target Start/End: Original strand, 51204580 - 51204619
Alignment:
Q  635 gaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  51204580 gaaaattctatggtgaagtcataaaaatgacttttctggt 51204619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 671
Target Start/End: Complemental strand, 55241317 - 55241278
Alignment:
Q  632 atggaaaattctatggtgaagtcgtaagaatgacttttct 671  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  55241317 atggaaaattctatggtgaagtcatgagaatgacttttct 55241278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 636 - 674
Target Start/End: Complemental strand, 20097537 - 20097499
Alignment:
Q  636 aaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  20097537 aaaattctatggtgaagtcatgagaatgacttttctggt 20097499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 636 - 674
Target Start/End: Original strand, 27396618 - 27396656
Alignment:
Q  636 aaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  27396618 aaaattctatggtgaagtcatgagaatgacttttctggt 27396656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 632 - 674
Target Start/End: Original strand, 38811811 - 38811853
Alignment:
Q  632 atggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||||||| | ||||||| |||||||||    
T  38811811 atggaaaattctatggtgaagtcatgagaatgatttttctggt 38811853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 632 - 674
Target Start/End: Original strand, 39397916 - 39397958
Alignment:
Q  632 atggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||||||| | |||||||||||| ||||    
T  39397916 atggaaaattctatggtgaagtcattagaatgacttttatggt 39397958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 634 - 674
Target Start/End: Original strand, 19631749 - 19631789
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  19631749 ggaaaattctatggtgaagtcataagaatgacttttctggt 19631789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 634 - 674
Target Start/End: Original strand, 8513233 - 8513273
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  8513233 ggaaaattctatggtgaagtcatgagaatgacttttctggt 8513273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 674
Target Start/End: Original strand, 20768087 - 20768126
Alignment:
Q  635 gaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  20768087 gaaaattctatggtgaagtcatgagaatgacttttctggt 20768126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 636 - 674
Target Start/End: Complemental strand, 30353540 - 30353502
Alignment:
Q  636 aaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  30353540 aaaattctatggtgaagtcatgagaatgacttttctggt 30353502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 674
Target Start/End: Original strand, 25440961 - 25440998
Alignment:
Q  637 aaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||||||| | |||||||||||||||    
T  25440961 aaattctatggtgaagtcgttaaaatgacttttctggt 25440998  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 631 - 677
Target Start/End: Complemental strand, 10359403 - 10359357
Alignment:
Q  631 gatggaaaattctatggtgaagtcgtaagaatgacttttctggtaaa 677  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||    
T  10359403 gatggaaaattctatggtgaagtcatgataatgacttttctggtaaa 10359357  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 631 - 671
Target Start/End: Complemental strand, 5657670 - 5657630
Alignment:
Q  631 gatggaaaattctatggtgaagtcgtaagaatgacttttct 671  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  5657670 gatggaaaattctatggtgaagtcatgagaatgacttttct 5657630  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 634 - 674
Target Start/End: Complemental strand, 26524513 - 26524473
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  26524513 ggaaaattctatggtgaagtcatgagaatgacttttctggt 26524473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 671
Target Start/End: Original strand, 8861258 - 8861297
Alignment:
Q  632 atggaaaattctatggtgaagtcgtaagaatgacttttct 671  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  8861258 atggaaaattctatggtgaagtcatgagaatgacttttct 8861297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 674
Target Start/End: Original strand, 24211717 - 24211756
Alignment:
Q  635 gaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  24211717 gaaaattctatggtgaagtcataagaatgacttttttggt 24211756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 669
Target Start/End: Original strand, 30055501 - 30055536
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgactttt 669  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30055501 ggaaaattctatggtgaagtcataagaatgactttt 30055536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 633 - 671
Target Start/End: Original strand, 6546493 - 6546531
Alignment:
Q  633 tggaaaattctatggtgaagtcgtaagaatgacttttct 671  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  6546493 tggaaaattctatggtgaagtcataagaatgatttttct 6546531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 632 - 674
Target Start/End: Complemental strand, 23402421 - 23402379
Alignment:
Q  632 atggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||| |||||| | |||||||||||||||||    
T  23402421 atggaaaattctatggcgaagtcatgagaatgacttttctggt 23402379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 674
Target Start/End: Original strand, 12165726 - 12165767
Alignment:
Q  633 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||| ||||||||||| | |||||||||||||||    
T  12165726 tggaaaattctacggtgaagtcgttaaaatgacttttctggt 12165767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 674
Target Start/End: Original strand, 37109846 - 37109887
Alignment:
Q  633 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||||||||| ||| |||||||||| ||||    
T  37109846 tggaaaattctatggtgaagtcataaaaatgacttttttggt 37109887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 678
Target Start/End: Complemental strand, 25501099 - 25501057
Alignment:
Q  636 aaaattctatggtgaagtcgtaagaatgacttttctggtaaag 678  Q
    ||||||||||||||||||| | |||||||||||||||||||||    
T  25501099 aaaattctatggtgaagtcatgagaatgacttttctggtaaag 25501057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 634 - 674
Target Start/End: Complemental strand, 8742062 - 8742022
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  8742062 ggaaaattctatggtgaagtcatgagaatgacttttctggt 8742022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 634 - 674
Target Start/End: Original strand, 27330306 - 27330346
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  27330306 ggaaaattctatggtgaagtcgtgggaatgacttttctggt 27330346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 632 - 674
Target Start/End: Complemental strand, 14409503 - 14409461
Alignment:
Q  632 atggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||||||| | ||||||| |||||||||    
T  14409503 atggaaaattctatggtgaagtcatgagaatgatttttctggt 14409461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 674
Target Start/End: Original strand, 7693229 - 7693270
Alignment:
Q  633 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  7693229 tggaaaattctatggtgaagtcattaaaatgacttttctggt 7693270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 671
Target Start/End: Original strand, 39572819 - 39572856
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttct 671  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  39572819 ggaaaattctatggtgaagtcatgagaatgacttttct 39572856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 632 - 678
Target Start/End: Original strand, 3309142 - 3309188
Alignment:
Q  632 atggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 678  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||||    
T  3309142 atggaaaattctatggtaaagtcatgagaatgacttttctggtaaag 3309188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 674
Target Start/End: Original strand, 38823209 - 38823250
Alignment:
Q  633 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  38823209 tggaaaattctatggtgaagtcatgagaatgacttttctggt 38823250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 634 - 674
Target Start/End: Original strand, 1547283 - 1547323
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  1547283 ggaaaattctatggtgaagtcatgagaatgacttttctggt 1547323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 633 - 671
Target Start/End: Original strand, 43579241 - 43579279
Alignment:
Q  633 tggaaaattctatggtgaagtcgtaagaatgacttttct 671  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  43579241 tggaaaattctatggtgaagtcatgagaatgacttttct 43579279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 674
Target Start/End: Original strand, 15009240 - 15009281
Alignment:
Q  633 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||||||||| |||||||||||||| ||||    
T  15009240 tggaaaattctatggtgaagtcataagaatgacttttttggt 15009281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 634 - 674
Target Start/End: Complemental strand, 1150296 - 1150256
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  1150296 ggaaaattctatggtgaagtcataagaatgacttttttggt 1150256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 634 - 674
Target Start/End: Original strand, 7998362 - 7998402
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  7998362 ggaaaattctatggtgaagtcatgagaatgacttttctggt 7998402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 634 - 672
Target Start/End: Complemental strand, 39099300 - 39099262
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttctg 672  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  39099300 ggaaaattctatggtgaagtcatgagaatgacttttctg 39099262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 674
Target Start/End: Original strand, 13307621 - 13307662
Alignment:
Q  633 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||||||||| | ||||||| |||||||||    
T  13307621 tggaaaattctatggtgaagtcatgagaatgatttttctggt 13307662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 632 - 672
Target Start/End: Original strand, 4015449 - 4015489
Alignment:
Q  632 atggaaaattctatggtgaagtcgtaagaatgacttttctg 672  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  4015449 atggaaaattctatggtgaagtcatgagaatgacttttctg 4015489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 634 - 674
Target Start/End: Complemental strand, 40640682 - 40640642
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  40640682 ggaaaattctatggtgaagtcatgagaatgacttttctggt 40640642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 632 - 672
Target Start/End: Original strand, 42204340 - 42204380
Alignment:
Q  632 atggaaaattctatggtgaagtcgtaagaatgacttttctg 672  Q
    |||||||||||||| |||||||||| |||||||||||||||    
T  42204340 atggaaaattctatcgtgaagtcgtgagaatgacttttctg 42204380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 634 - 678
Target Start/End: Complemental strand, 45879546 - 45879502
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 678  Q
    ||||||||||||| ||||||| | |||||||||||||||||||||    
T  45879546 ggaaaattctatgctgaagtcatgagaatgacttttctggtaaag 45879502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 634 - 672
Target Start/End: Original strand, 11466815 - 11466853
Alignment:
Q  634 ggaaaattctatggtgaagtcgtaagaatgacttttctg 672  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  11466815 ggaaaattctatggtgaagtcttgagaatgacttttctg 11466853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 674
Target Start/End: Complemental strand, 51213167 - 51213126
Alignment:
Q  633 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||||||||| | |||||||||||| ||||    
T  51213167 tggaaaattctatggtgaagtcatgagaatgacttttttggt 51213126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 636 - 674
Target Start/End: Original strand, 43959 - 43997
Alignment:
Q  636 aaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  43959 aaaattctatggtgaagtcgtaagaaagacttttttggt 43997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 636 - 674
Target Start/End: Complemental strand, 154828 - 154790
Alignment:
Q  636 aaaattctatggtgaagtcgtaagaatgacttttctggt 674  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  154828 aaaattctatggtgaagtcgtaagaaagacttttttggt 154790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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