View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4688-Insertion-2 (Length: 717)
Name: NF4688-Insertion-2
Description: NF4688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4688-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 408
Target Start/End: Complemental strand, 4946898 - 4946490
Alignment:
| Q |
8 |
ctttcttcttctatacatatgcaaattcattttatcggagtaaacatcataatccaaagttcgaccagaaaataatgtttggccaaaaattattcgagaa |
107 |
Q |
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| T |
4946898 |
ctttcttcttctatacatatgcaaattcattttatccgagtaaacatcataatccaaagttcgaccagaaaataatgtttggccaaaaattattcgagag |
4946799 |
T |
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| Q |
108 |
ctaggattctaagatgaatcactttaatatttcaagttcagctatagttatgattacttaagagtttaagaattttaagataggtgatctttgacagtag |
207 |
Q |
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| T |
4946798 |
ctaggattctaagatgaatcactttaatatttcaagttcagctatagttatgattacttaagagtttaagaattttaagataggcgatctttgacagtag |
4946699 |
T |
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| Q |
208 |
tatgcttacaagttcaggcacatagataggggacataatttgcatcatcttcagtttctttcctaaaaattcgattcgatttgatgtggtatgcactgaa |
307 |
Q |
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| T |
4946698 |
tatgcttacaagttcaggcacatagataggggacataatttgcatcatcttcagtttctttcctaaaaattcgattcgatttgatgtggtatgcactgga |
4946599 |
T |
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| Q |
308 |
aaagtg--------aagagnnnnnnnnttaatcagttgaaatctaacatgttagaagaccaaagaaaaccctaaaagaaaaagcagattaagagttaaat |
399 |
Q |
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| T |
4946598 |
aaagtgaaaaaaaaaagaaaaacaaaattaaacagttgaaatctaacatgttagaagacgaaagaaaaccctaaaagaaaaagcagattaagagttaaat |
4946499 |
T |
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| Q |
400 |
aggatacct |
408 |
Q |
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| T |
4946498 |
aggatacct |
4946490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 465 - 715
Target Start/End: Complemental strand, 4946434 - 4946190
Alignment:
| Q |
465 |
ttaatattccaaattgttgtaagatgagaaataaagagatgtaagtgatttatgtagagtcacaatacacgcataatactcgggtgatgacttaaattat |
564 |
Q |
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| T |
4946434 |
ttaatattccaaattgttgtaagatgagaaataaagagatgtaagtgatttat--agagtcacaatacacgcataatactcgggtgatgacttaaattat |
4946337 |
T |
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| Q |
565 |
acacgtgtgaaatggattaatattgtttataatgtggctgatcccttttcactcgttaaatttagtcaaactatgggttctatggtcatcttatannnnn |
664 |
Q |
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| T |
4946336 |
acacgtgtgaaatggattaatattgtttataatgcggctgatcccttttcactcgttaaatttagtcaaactatgggttctatagtcatcttata----c |
4946241 |
T |
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| Q |
665 |
nnnnnnnttgcaacatcattttagcacgtccttttgagaatttaagcttta |
715 |
Q |
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| T |
4946240 |
tctctctttgcaacatcattttagcacgtccttttgagaatttaagcttta |
4946190 |
T |
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