View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4688_low_1 (Length: 523)

Name: NF4688_low_1
Description: NF4688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4688_low_1
NF4688_low_1
[»] chr7 (8 HSPs)
chr7 (11-505)||(31215412-31215906)
chr7 (28-83)||(31058594-31058649)
chr7 (13-83)||(31140397-31140467)
chr7 (13-83)||(31153412-31153482)
chr7 (13-83)||(31103038-31103108)
chr7 (286-383)||(31140112-31140209)
chr7 (286-383)||(31153130-31153227)
chr7 (13-74)||(31184130-31184191)
[»] scaffold0400 (2 HSPs)
scaffold0400 (283-326)||(6658-6701)
scaffold0400 (282-339)||(12933-12990)
[»] scaffold0365 (2 HSPs)
scaffold0365 (283-326)||(7302-7345)
scaffold0365 (282-339)||(13576-13633)
[»] chr5 (1 HSPs)
chr5 (31-83)||(37027180-37027232)
[»] chr1 (7 HSPs)
chr1 (282-319)||(15040918-15040955)
chr1 (282-326)||(14532646-14532690)
chr1 (282-326)||(15002274-15002318)
chr1 (282-326)||(15011167-15011211)
chr1 (282-326)||(15017282-15017326)
chr1 (282-326)||(15032625-15032669)
chr1 (282-326)||(15037187-15037231)


Alignment Details
Target: chr7 (Bit Score: 491; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 11 - 505
Target Start/End: Complemental strand, 31215906 - 31215412
Alignment:
Q  11 catcatcaaaattgttggtagcttcaattatattttcaaacatcatttttccatcatgactccatatggaaaagacttcttctgcttgtgcttcattaga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31215906 catcatcaaaattgttggtagcttcaattatattttcaaacatcatttttccatcatgactccatatggaaaagacttcttctgcttgtgcttcattaga 31215807  T
Q  111 atctttatccttgttttttgtctttcttgctctccgataaataatatacattgaaattcccaacccacaaaatactagtactagagcacctaagatgaca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31215806 atctttatccttgttttttgtctttcttgctctccgataaataatatacattgaaattcccaacccagaaaatactagtactagagcacctaagatgaca 31215707  T
Q  211 aacaatactagaaggaggatctcgtgtctctttttactgtggctagttgggcaaagcattagaccagtgtgattaccacacaagcctttgttatttttta 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31215706 aacaatactagaaggaggatctcgtgtctctttttactgtggctagttgggcaaagcattagaccagtgtgattaccacacaagcctttgttatttttta 31215607  T
Q  311 atgattcaattggagccttgagaaaggcttgattatttggtagcctcccttctaactggttgtttgatatgttgacataggtcaagcttgactgtgcatc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31215606 atgattcaattggagccttgagaaaggcttgattatttggtagcctcccttctaactggttgtttgatatgttgacataggtcaagcttgactgtgcatc 31215507  T
Q  411 ctcaaaactggttggaatagtgccagaaagattattgcatgacaggtttagcatttgcaattgcttcaactctcctagcactgatggtattgttc 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31215506 ctcaaaactggttggaatagtgccagaaagattattgcatgacaggtttagcatttgcaattgcttcaactctcctagcactgatggtattgttc 31215412  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 31058649 - 31058594
Alignment:
Q  28 gtagcttcaattatattttcaaacatcatttttccatcatgactccatatggaaaa 83  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  31058649 gtagcttcaataatattttcaaacatcatttttccatcatgactccaaatggaaaa 31058594  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 31140467 - 31140397
Alignment:
Q  13 tcatcaaaattgttggtagcttcaattatattttcaaacatcatttttccatcatgactccatatggaaaa 83  Q
    ||||||||||| |  ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||    
T  31140467 tcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcatgactccaaatggaaaa 31140397  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 31153482 - 31153412
Alignment:
Q  13 tcatcaaaattgttggtagcttcaattatattttcaaacatcatttttccatcatgactccatatggaaaa 83  Q
    ||||||||||| |  ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||    
T  31153482 tcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcatgactccaaatggaaaa 31153412  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 31103108 - 31103038
Alignment:
Q  13 tcatcaaaattgttggtagcttcaattatattttcaaacatcatttttccatcatgactccatatggaaaa 83  Q
    ||||||||||| |  ||||||||||| |||||||||||||||||||| |||||||| ||||| || |||||    
T  31103108 tcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcatggctccaaatcgaaaa 31103038  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 286 - 383
Target Start/End: Complemental strand, 31140209 - 31140112
Alignment:
Q  286 ccacacaagcctttgttattttttaatgattcaattggagccttgagaaaggcttgattatttggtagcctcccttctaactggttgtttgatatgtt 383  Q
    ||||||||| ||||||||||||| ||||||||||  ||||| |  ||||| ||| |||| |  || |||  |||||||||||| ||||||||||||||    
T  31140209 ccacacaagtctttgttatttttgaatgattcaaacggagcatgaagaaaagctggattgtccggaagcggcccttctaactgattgtttgatatgtt 31140112  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 286 - 383
Target Start/End: Complemental strand, 31153227 - 31153130
Alignment:
Q  286 ccacacaagcctttgttattttttaatgattcaattggagccttgagaaaggcttgattatttggtagcctcccttctaactggttgtttgatatgtt 383  Q
    ||||||||| ||||||||||||| ||||||||||  ||||| |  ||||| ||| |||| |  || |||| |||||||||||| |||| |||||||||    
T  31153227 ccacacaagtctttgttatttttgaatgattcaaacggagcatgaagaaaagctggattgtccggaagccgcccttctaactgattgtctgatatgtt 31153130  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 31184191 - 31184130
Alignment:
Q  13 tcatcaaaattgttggtagcttcaattatattttcaaacatcatttttccatcatgactcca 74  Q
    ||||||||||| |  ||||||| ||| ||| |||||||| ||||||| ||||||||||||||    
T  31184191 tcatcaaaattctcagtagcttgaataatactttcaaacgtcattttcccatcatgactcca 31184130  T

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Target: scaffold0400 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 6701 - 6658
Alignment:
Q  283 ttaccacacaagcctttgttattttttaatgattcaattggagc 326  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  6701 ttaccacacaagcctttgttatttcttaatgcttcaattggagc 6658  T

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Target: scaffold0400; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 12990 - 12933
Alignment:
Q  282 attaccacacaagcctttgttattttttaatgattcaattggagccttgagaaaggct 339  Q
    ||||||||||||||||||||||||| | | || |||||||||||| || || ||||||    
T  12990 attaccacacaagcctttgttatttctcagtgcttcaattggagcttttaggaaggct 12933  T

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Target: scaffold0365 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 7345 - 7302
Alignment:
Q  283 ttaccacacaagcctttgttattttttaatgattcaattggagc 326  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  7345 ttaccacacaagcctttgttatttcttaatgcttcaattggagc 7302  T

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Target: scaffold0365; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 13633 - 13576
Alignment:
Q  282 attaccacacaagcctttgttattttttaatgattcaattggagccttgagaaaggct 339  Q
    ||||||||||||||||||||||||| | | || |||||||||||| || || ||||||    
T  13633 attaccacacaagcctttgttatttctcagtgcttcaattggagcttttaggaaggct 13576  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 37027232 - 37027180
Alignment:
Q  31 gcttcaattatattttcaaacatcatttttccatcatgactccatatggaaaa 83  Q
    |||||||| ||||||||| | | |||||||||||||| |||||||||||||||    
T  37027232 gcttcaatgatattttcataaaccatttttccatcataactccatatggaaaa 37027180  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 15040955 - 15040918
Alignment:
Q  282 attaccacacaagcctttgttattttttaatgattcaa 319  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  15040955 attaccacacaagcctttgttatttcttaatgcttcaa 15040918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 14532646 - 14532690
Alignment:
Q  282 attaccacacaagcctttgttattttttaatgattcaattggagc 326  Q
    ||||||||||||||||||||||||| | | || ||||||||||||    
T  14532646 attaccacacaagcctttgttatttctaagtgcttcaattggagc 14532690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 15002318 - 15002274
Alignment:
Q  282 attaccacacaagcctttgttattttttaatgattcaattggagc 326  Q
    ||||||||||||||||||||||||| | | || ||||||||||||    
T  15002318 attaccacacaagcctttgttatttctcagtgcttcaattggagc 15002274  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 15011211 - 15011167
Alignment:
Q  282 attaccacacaagcctttgttattttttaatgattcaattggagc 326  Q
    ||||||||| ||||||||||||||| | |||| ||||||||||||    
T  15011211 attaccacataagcctttgttatttgtcaatgcttcaattggagc 15011167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 15017326 - 15017282
Alignment:
Q  282 attaccacacaagcctttgttattttttaatgattcaattggagc 326  Q
    ||||||||||||||| ||||||||| | |||| ||||||||||||    
T  15017326 attaccacacaagcccttgttatttgtcaatgcttcaattggagc 15017282  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 15032669 - 15032625
Alignment:
Q  282 attaccacacaagcctttgttattttttaatgattcaattggagc 326  Q
    ||||||||| ||||||||||||||| | |||| ||||||||||||    
T  15032669 attaccacataagcctttgttatttgtcaatgcttcaattggagc 15032625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 15037231 - 15037187
Alignment:
Q  282 attaccacacaagcctttgttattttttaatgattcaattggagc 326  Q
    ||||||||| ||||||||||||||| | |||| ||||||||||||    
T  15037231 attaccacataagcctttgttatttgtcaatgcttcaattggagc 15037187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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