View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4688_low_2 (Length: 349)
Name: NF4688_low_2
Description: NF4688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4688_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 9 - 349
Target Start/End: Original strand, 3923503 - 3923843
Alignment:
| Q |
9 |
acatcatcaaatcttaaatccacatcgttcgaattattcaaattagttgtatatgtacccaaactcacattcacatgatcagctaatcttacttgctcaa |
108 |
Q |
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| T |
3923503 |
acatcatcaaatcttatatccacatcgttcgaattattcaaattagttgtatatgtacccaaactcacattcacatgatcagctaatcttacttgctcaa |
3923602 |
T |
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| Q |
109 |
cgctcaagacaagttcttcatcgaaaggctcttgtgtaacaaacatcaaatcctcattccaaaacggtttcgcgctcttttccttagaaaaactagttct |
208 |
Q |
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| T |
3923603 |
cgctcaagacaagttcttcatcgaaaggctcttgtgtaacaaacatcaaatcctcattccaaaacggtttcgcgctcttttccttagaaaaactagttct |
3923702 |
T |
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| Q |
209 |
caaacaaaaactcttccctaaaccaacttggacaaacaattccgaactctcaggaggaaattgtagtaacaaatcgtctgcttgaatcacagtgaccttt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
3923703 |
caaacaaaaactcttccctaaaccaacttggacaaacaattccgaactctcaggaggaaattgtagtaacaaatggtgtgcttgaatcacagtgaccttt |
3923802 |
T |
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| Q |
309 |
acatacctaagggaaggtgacatatataccttagaacgagt |
349 |
Q |
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| T |
3923803 |
acatacctaagggaaggtgacatatataccttagaacgagt |
3923843 |
T |
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