View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4688_low_4 (Length: 287)
Name: NF4688_low_4
Description: NF4688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4688_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 36292838 - 36293107
Alignment:
| Q |
18 |
cactcacaccaacctcaaactcgcttccttctccaaacccaaaatcaaaatcaaaaccaaaccttactctctcaattcctcatttcgtctttctaagcta |
117 |
Q |
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| T |
36292838 |
cactcacaccaacctcaaactcgcttccttctccaaacccaaaatcaaaatcaaaaccataccttactctctcaattcctcatttcgtctttctaagcta |
36292937 |
T |
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| Q |
118 |
agagtttcagctaccaaggatcagaatcattcagagtcacagacaagtaataatgtttcagatgatgaagtaacagagcaacatccattggatgaaaatg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36292938 |
agagtttcagctaccaaggatcagaatcattcagagtcacagacaagtaataatgtttcagatgatgaagtgacagagcaacatccattggatgaaaatg |
36293037 |
T |
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| Q |
218 |
gtggcgttggaggaggatttgaccttggatggttacctgattttcatcacgttctcattgcttctttgtc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
36293038 |
gtggcgttggaggaggatttgaccttggatggttaccttcttttcctcacgttctcattgcttctttgtc |
36293107 |
T |
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