View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4688_low_5 (Length: 265)
Name: NF4688_low_5
Description: NF4688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4688_low_5 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 265
Target Start/End: Complemental strand, 4954028 - 4953773
Alignment:
| Q |
10 |
catcatcaactaccctccaatgaattgcgaaaacctgtcaccccagatcatcttaaacttcccaaaccattcaaatatcctgaaaggtatctaccttgtc |
109 |
Q |
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| T |
4954028 |
catcatcaactaccctccaatgaattgcgaaaacctgtcaccccagatcatctcaaactccccaaaccattcaaatatcctgaaaggtatctaccttgtc |
4953929 |
T |
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| Q |
110 |
ttttatattagattctctgtaatcacgcaattccataaagatctgatggctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgc |
209 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4953928 |
ttttatattagattatctgtaatcacgcaattccataaagatctgacagctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgt |
4953829 |
T |
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| Q |
210 |
gtgcttgtttgaattgattttgacatgttttatgttatattttagtttaattgatt |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
4953828 |
gtgcttgtttgaattgattttgacatgttttatgttatctggtagtttaattgatt |
4953773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 265
Target Start/End: Complemental strand, 4938319 - 4938064
Alignment:
| Q |
10 |
catcatcaactaccctccaatgaattgcgaaaacctgtcaccccagatcatcttaaacttcccaaaccattcaaatatcctgaaaggtatctaccttgtc |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
4938319 |
catcatcaactaccctccaatgaattgcgaaaacctgtcaccccatatcatctcaaactccccaaaccattcaaatatcttgaaaggtatctaccttgtc |
4938220 |
T |
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| Q |
110 |
ttttatattagattctctgtaatcacgcaattccataaagatctgatggctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgc |
209 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4938219 |
ttttatattagattctctgtaatgacgcaattccataaagatccgacggctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgc |
4938120 |
T |
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| Q |
210 |
gtgcttgtttgaattgattttgacatgttttatgttatattttagtttaattgatt |
265 |
Q |
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|||||| ||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
4938119 |
gtgcttatttgaattgattttgacatgttttatgttatctggtagtttaattgatt |
4938064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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