View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4688_low_7 (Length: 219)
Name: NF4688_low_7
Description: NF4688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4688_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 3924289 - 3924497
Alignment:
| Q |
9 |
tcatatctccttgtaagcgtatcagcttcaaatgcagcattattgttaacactagtctcctttggtgcattctcattatttgccattttcttaacctgca |
108 |
Q |
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| T |
3924289 |
tcatatctccttgtaagcttatcagcttcaaatgcagcattattgttaacactagtctcctttggtgcattctcattatttgccattttcttaacctgca |
3924388 |
T |
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| Q |
109 |
ttgtacaaataactttattagctttattaccttatcatgcaagtgtagaataattctcagcatgtattaagaacagttagggaccatcagagagacttta |
208 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3924389 |
ttgtacaaataactt--ttagctttattaccttatcatgcaagtgtagaataattctcagcatgtattaagaacagttagggaccatcagagagacttta |
3924486 |
T |
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| Q |
209 |
agatggcaagg |
219 |
Q |
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||||||||||| |
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| T |
3924487 |
agatggcaagg |
3924497 |
T |
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