View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689-Insertion-11 (Length: 460)
Name: NF4689-Insertion-11
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689-Insertion-11 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 459
Target Start/End: Complemental strand, 34746981 - 34746534
Alignment:
| Q |
8 |
tttacaagtacctttgcttgaagtagtttcaataagctatcatcccttctatcgcacgtcgcatgctgaaattaagttttatgcttcgcacattgcaaca |
107 |
Q |
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| T |
34746981 |
tttacaagtacctctgcttgaagtagtttcaataagctatcatcccttctatcgcacgtcgcatgctgaaattaagttttatgcttcgcgcattgcaaca |
34746882 |
T |
|
| Q |
108 |
ttttgttattatggtcatatgtcagatacaattttgtttgaggcacacagtgtagcatctgccgatattactctatataataagaacaagaagagtccgc |
207 |
Q |
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| T |
34746881 |
ttttgttattatggtcatatgtcagatacaattttgtttgagggacatagtgtagcatctgctgatattactttatataataagaacaagaagagtccgc |
34746782 |
T |
|
| Q |
208 |
aagaaattgggatttttgtttgtaaacttctcagtattaatccagaatgtctaaagctgtctgtacatggttgcatttcgcaggtatg-nnnnnnnactt |
306 |
Q |
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| T |
34746781 |
aagaaattgggatttttgtttgtaaacttctcagtattaatccagaatgtctaaagctgtctgtacatggttgcatttcgcaggtatgttttttttactt |
34746682 |
T |
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| Q |
307 |
ttcttgcttcactatgtttgtgcatgattgcatttcgcaggcatattttcaatgcatatattgactagtgttctacctcctatatttgcagtcagaattg |
406 |
Q |
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| T |
34746681 |
ttcttgcttcactatgtttg--------tgcatttcgcaagcatattttcaatgcatatattgactagagttctacctcctatatttgcagtcagaattg |
34746590 |
T |
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| Q |
407 |
tgtaatttttcgtcgaacttacttt---atcttatggacatagtctagatatattg |
459 |
Q |
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| T |
34746589 |
tgtaatttttcatcaaatttactttataatcttatggacatagtctagatatattg |
34746534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 34751591 - 34751336
Alignment:
| Q |
8 |
tttacaagtacctttgcttgaagtagtttcaataagctatcatcccttctatcgcacgtcgcatgctgaaattaagttttatgcttcgcacattgcaaca |
107 |
Q |
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||||||||| ||| | |||||||| ||||||||||||||| |||||||||||| || || ||| ||||||||||||||||||| ||| | |||||| | |
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| T |
34751591 |
tttacaagtgcctctccttgaagttgtttcaataagctatgatcccttctatcacaaatcacattgtgaaattaagttttatgctacgcgccttgcaaaa |
34751492 |
T |
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| Q |
108 |
ttttgttattatggtcatatgtcagatacaattttgtttgaggcacacagtgtagcatctgccgatattactctatataataagaacaagaagagtccgc |
207 |
Q |
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| T |
34751491 |
ttctgttattctggttatatgtcagatacaattttgttagaggcacatagtgtagcatttgctgatattgctctatatgatgataatgagaagagtctgc |
34751392 |
T |
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| Q |
208 |
aagaaattgggatttttgtttgtaaacttctcagtattaatccagaatgtctaaag |
263 |
Q |
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| T |
34751391 |
aagaaattgggatttttgtttgtaaacttcttagtattaatccagaaagtctaaag |
34751336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 24 - 266
Target Start/End: Complemental strand, 34759405 - 34759163
Alignment:
| Q |
24 |
cttgaagtagtttcaataagctatcatcccttctatcgcacgtcgcatgctgaaattaagttttatgcttcgcacattgcaacattttgttattatggtc |
123 |
Q |
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|||||||| ||||||||||| ||| || |||||||| ||| | |||||||||||||||||||||| || || | ||||| ||||||||||| ||| |
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| T |
34759405 |
cttgaagttgtttcaataagatattctcgcttctatcacactttgcatgctgaaattaagttttatactatgcgccctgcaaaattttgttattctggct |
34759306 |
T |
|
| Q |
124 |
atatgtcagatacaattttgtttgaggcacacagtgtagcatctgccgatattactctatataataagaacaagaagagtccgcaagaaattgggatttt |
223 |
Q |
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| T |
34759305 |
atatgtcagatacaattttgttagaggcacatagtgtaggatttgctgatattgctttatatgatgatcacgagaatagtcttaaaaaaattgggatttt |
34759206 |
T |
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| Q |
224 |
tgtttgtaaacttctcagtattaatccagaatgtctaaagctg |
266 |
Q |
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|||| |||||||||| | |||||||||||| |||||||||| |
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| T |
34759205 |
tgttactaaacttctctgcattaatccagaaactctaaagctg |
34759163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 460
Target Start/End: Complemental strand, 34751096 - 34751040
Alignment:
| Q |
404 |
ttgtgtaatttttcgtcgaacttactttatcttatggacatagtctagatatattgt |
460 |
Q |
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|||||||||||||| | || |||||||||||||||||||| |||| ||||||||| |
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| T |
34751096 |
ttgtgtaatttttcattaaatttactttatcttatggacatggtctctatatattgt |
34751040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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