View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4689-Insertion-14 (Length: 49)

Name: NF4689-Insertion-14
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4689-Insertion-14
NF4689-Insertion-14
[»] chr6 (13 HSPs)
chr6 (8-49)||(9168834-9168875)
chr6 (8-49)||(33273852-33273893)
chr6 (8-49)||(33642581-33642622)
chr6 (8-47)||(33390132-33390171)
chr6 (8-49)||(31560788-31560829)
chr6 (8-49)||(31567107-31567148)
chr6 (12-49)||(33059627-33059664)
chr6 (8-49)||(33402674-33402715)
chr6 (8-48)||(33306546-33306586)
chr6 (8-49)||(33264709-33264750)
chr6 (12-49)||(33287606-33287643)
chr6 (12-49)||(33360143-33360180)
chr6 (8-48)||(33412013-33412053)
[»] chr2 (1 HSPs)
chr2 (8-49)||(17438807-17438848)
[»] chr4 (6 HSPs)
chr4 (9-43)||(31496912-31496946)
chr4 (8-42)||(31019848-31019882)
chr4 (8-42)||(31029729-31029763)
chr4 (8-42)||(31159297-31159331)
chr4 (8-42)||(31476960-31476994)
chr4 (8-42)||(31489664-31489698)
[»] scaffold1749 (1 HSPs)
scaffold1749 (8-49)||(59-100)
[»] scaffold0428 (1 HSPs)
scaffold0428 (8-49)||(8820-8861)


Alignment Details
Target: chr6 (Bit Score: 42; Significance: 8e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 8e-16
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 9168834 - 9168875
Alignment:
Q  8 tgtcttccctattcctcccattccacaaattcctatagcacg 49  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9168834 tgtcttccctattcctcccattccacaaattcctatagcacg 9168875  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 8e-16
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 33273852 - 33273893
Alignment:
Q  8 tgtcttccctattcctcccattccacaaattcctatagcacg 49  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33273852 tgtcttccctattcctcccattccacaaattcctatagcacg 33273893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 8e-16
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 33642622 - 33642581
Alignment:
Q  8 tgtcttccctattcctcccattccacaaattcctatagcacg 49  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33642622 tgtcttccctattcctcccattccacaaattcctatagcacg 33642581  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 33390132 - 33390171
Alignment:
Q  8 tgtcttccctattcctcccattccacaaattcctatagca 47  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33390132 tgtcttccctattcctcccattccacaaattcctatagca 33390171  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 31560829 - 31560788
Alignment:
Q  8 tgtcttccctattcctcccattccacaaattcctatagcacg 49  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  31560829 tgtcttccctattcctcccattccacaaattcctataacacg 31560788  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 31567148 - 31567107
Alignment:
Q  8 tgtcttccctattcctcccattccacaaattcctatagcacg 49  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  31567148 tgtcttccctattccccccattccacaaattcctatagcacg 31567107  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 33059627 - 33059664
Alignment:
Q  12 ttccctattcctcccattccacaaattcctatagcacg 49  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33059627 ttccctattcctcccattccacaaattcctatagcacg 33059664  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 33402674 - 33402715
Alignment:
Q  8 tgtcttccctattcctcccattccacaaattcctatagcacg 49  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  33402674 tgtcttccctattcctcccattccacaaattcttatagcacg 33402715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.0000000000008
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 33306546 - 33306586
Alignment:
Q  8 tgtcttccctattcctcccattccacaaattcctatagcac 48  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  33306546 tgtcttccctattcctcccattccagaaattcctatagcac 33306586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 33264709 - 33264750
Alignment:
Q  8 tgtcttccctattcctcccattccacaaattcctatagcacg 49  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  33264709 tgtcttccctattcctcccatcccccaaattcctatagcacg 33264750  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 33287606 - 33287643
Alignment:
Q  12 ttccctattcctcccattccacaaattcctatagcacg 49  Q
    |||||||||||||||||||||||||||||||| |||||    
T  33287606 ttccctattcctcccattccacaaattcctattgcacg 33287643  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 33360143 - 33360180
Alignment:
Q  12 ttccctattcctcccattccacaaattcctatagcacg 49  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  33360143 ttcccaattcctccaattccacaaattcctatagcacg 33360180  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 33412013 - 33412053
Alignment:
Q  8 tgtcttccctattcctcccattccacaaattcctatagcac 48  Q
    |||||| |||||||| ||||||||||||||||| |||||||    
T  33412013 tgtctttcctattccgcccattccacaaattccaatagcac 33412053  T

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Target: chr2 (Bit Score: 34; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 17438848 - 17438807
Alignment:
Q  8 tgtcttccctattcctcccattccacaaattcctatagcacg 49  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  17438848 tgtcttccctattcctcccatcccccaaattcctatagcacg 17438807  T

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Target: chr4 (Bit Score: 31; Significance: 0.000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 31496946 - 31496912
Alignment:
Q  9 gtcttccctattcctcccattccacaaattcctat 43  Q
    |||||||||||||||||||| ||||||||||||||    
T  31496946 gtcttccctattcctcccatcccacaaattcctat 31496912  T

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Target: chr4; HSP #2
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 31019848 - 31019882
Alignment:
Q  8 tgtcttccctattcctcccattccacaaattccta 42  Q
    ||||||||||||||| ||||| |||||||||||||    
T  31019848 tgtcttccctattccacccatcccacaaattccta 31019882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 31029729 - 31029763
Alignment:
Q  8 tgtcttccctattcctcccattccacaaattccta 42  Q
    ||||||||||||||| ||||| |||||||||||||    
T  31029729 tgtcttccctattccacccatcccacaaattccta 31029763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 31159297 - 31159331
Alignment:
Q  8 tgtcttccctattcctcccattccacaaattccta 42  Q
    ||||||||||||||| ||||| |||||||||||||    
T  31159297 tgtcttccctattccacccatcccacaaattccta 31159331  T

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Target: chr4; HSP #5
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 31476994 - 31476960
Alignment:
Q  8 tgtcttccctattcctcccattccacaaattccta 42  Q
    ||||||||||||||| ||||| |||||||||||||    
T  31476994 tgtcttccctattccacccatcccacaaattccta 31476960  T

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Target: chr4; HSP #6
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 31489698 - 31489664
Alignment:
Q  8 tgtcttccctattcctcccattccacaaattccta 42  Q
    ||||||||||||||| ||||| |||||||||||||    
T  31489698 tgtcttccctattccacccatcccacaaattccta 31489664  T

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Target: scaffold1749 (Bit Score: 30; Significance: 0.00000001; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 59 - 100
Alignment:
Q  8 tgtcttccctattcctcccattccacaaattcctatagcacg 49  Q
    ||||||||||||||||||||| || |||||||||||| ||||    
T  59 tgtcttccctattcctcccatcccccaaattcctataacacg 100  T

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Target: scaffold0428 (Bit Score: 30; Significance: 0.00000001; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 8820 - 8861
Alignment:
Q  8 tgtcttccctattcctcccattccacaaattcctatagcacg 49  Q
    ||||||||||||||||||||| || |||||||||||| ||||    
T  8820 tgtcttccctattcctcccatcccccaaattcctataacacg 8861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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