View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4689-Insertion-16 (Length: 307)

Name: NF4689-Insertion-16
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4689-Insertion-16
NF4689-Insertion-16
[»] chr2 (3 HSPs)
chr2 (143-307)||(2036172-2036336)
chr2 (38-81)||(2036397-2036440)
chr2 (7-39)||(2036457-2036489)
[»] chr6 (5 HSPs)
chr6 (143-307)||(19578771-19578935)
chr6 (143-307)||(19595212-19595381)
chr6 (33-81)||(19595442-19595490)
chr6 (38-81)||(19578996-19579039)
chr6 (7-39)||(19579056-19579088)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 7e-86; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 143 - 307
Target Start/End: Complemental strand, 2036336 - 2036172
Alignment:
Q  143 gatgaattgagtgaaattggtagtggagtttatggttgaaatcaaaagaggattgaatctggtaatggaggtcttcaaaacttcttcaattctctttctc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2036336 gatgaattgagtgaaattggtagtggagtttatggttgaaatcaaaagaggattgaatctggtaatggaggtcttcaaaacttcttcaattctctttctc 2036237  T
Q  243 tagttccgttccaaacaccgtttcttcaatttagggatttaaatccccaaattactttttcctcc 307  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2036236 tagttccgttccaaacactgtttcttcaatttagggatttaaatccccaaattactttttcctcc 2036172  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 2036440 - 2036397
Alignment:
Q  38 aagcttttatgtcataaccaaacccacatgattttccttaccat 81  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  2036440 aagctttaatgtcataaccaaacccacatgattttccttaccat 2036397  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 2036489 - 2036457
Alignment:
Q  7 acttcatcccctttccagagccacccaatacaa 39  Q
    |||||||||||||||||||||||||||||||||    
T  2036489 acttcatcccctttccagagccacccaatacaa 2036457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 143 - 307
Target Start/End: Complemental strand, 19578935 - 19578771
Alignment:
Q  143 gatgaattgagtgaaattggtagtggagtttatggttgaaatcaaaagaggattgaatctggtaatggaggtcttcaaaacttcttcaattctctttctc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || ||||||||    
T  19578935 gatgaattgagtgaaattggtagtggagtttatggttgaaatcaaaagaggattgaaactggtaatggaggtcttcaaaaattcttcacttttctttctc 19578836  T
Q  243 tagttccgttccaaacaccgtttcttcaatttagggatttaaatccccaaattactttttcctcc 307  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  19578835 tagttccgttctaaacactgtttcttcaatttagggatttaaatccccaaattacttcttcctcc 19578771  T

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Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 143 - 307
Target Start/End: Complemental strand, 19595381 - 19595212
Alignment:
Q  143 gatgaattgagtgaaattggtagtggagtttatggttgaaat-----caaaagaggattgaatctggtaatggaggtcttcaaaacttcttcaattctct 237  Q
    ||||||||||||||||||||| ||||||||||||||||||||     ||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  19595381 gatgaattgagtgaaattggtggtggagtttatggttgaaattaaatcaaaagaggattgaaactggtaatggaggtcttcaaaacttcttcacttctct 19595282  T
Q  238 ttctctagttccgttccaaacaccgtttcttcaatttagggatttaaatccccaaattactttttcctcc 307  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  19595281 ttctctagttccgttccaaacactgtttcttcaatttagggatttaaatccccaaattacttcttcctcc 19595212  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 19595490 - 19595442
Alignment:
Q  33 aatacaagcttttatgtcataaccaaacccacatgattttccttaccat 81  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  19595490 aatataagctttaatgtcataaccaaacccacatgattttccttaccat 19595442  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 19579039 - 19578996
Alignment:
Q  38 aagcttttatgtcataaccaaacccacatgattttccttaccat 81  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||    
T  19579039 aagctttaatgtcataaccaaacccacattattttccttaccat 19578996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 19579088 - 19579056
Alignment:
Q  7 acttcatcccctttccagagccacccaatacaa 39  Q
    |||||||||||||||||||||||||||||||||    
T  19579088 acttcatcccctttccagagccacccaatacaa 19579056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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