View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4689-Insertion-17 (Length: 123)

Name: NF4689-Insertion-17
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4689-Insertion-17
NF4689-Insertion-17
[»] chr4 (3 HSPs)
chr4 (6-121)||(9335436-9335551)
chr4 (6-98)||(30775760-30775852)
chr4 (14-101)||(35132962-35133049)
[»] chr7 (14 HSPs)
chr7 (6-100)||(8667927-8668021)
chr7 (6-123)||(8671180-8671290)
chr7 (6-98)||(13333024-13333116)
chr7 (6-98)||(8585274-8585366)
chr7 (14-109)||(6790028-6790123)
chr7 (12-91)||(10493949-10494028)
chr7 (14-98)||(1301980-1302064)
chr7 (6-102)||(8629040-8629136)
chr7 (11-92)||(8659876-8659957)
chr7 (14-109)||(17268455-17268552)
chr7 (9-112)||(3147783-3147886)
chr7 (14-101)||(17260757-17260844)
chr7 (6-91)||(8654958-8655043)
chr7 (17-91)||(27830450-27830524)
[»] chr2 (9 HSPs)
chr2 (14-106)||(7542742-7542834)
chr2 (10-92)||(16661566-16661648)
chr2 (14-106)||(12235205-12235297)
chr2 (14-103)||(16657080-16657169)
chr2 (18-98)||(43625930-43626010)
chr2 (53-98)||(12244974-12245019)
chr2 (20-105)||(12258142-12258227)
chr2 (14-98)||(11999910-11999994)
chr2 (55-98)||(39373417-39373460)
[»] chr5 (1 HSPs)
chr5 (8-98)||(28220461-28220551)
[»] chr1 (4 HSPs)
chr1 (14-103)||(15595552-15595642)
chr1 (20-98)||(4678126-4678204)
chr1 (14-88)||(52549098-52549172)
chr1 (10-97)||(34466362-34466449)
[»] chr6 (1 HSPs)
chr6 (42-123)||(28911126-28911207)
[»] chr8 (1 HSPs)
chr8 (8-92)||(43745357-43745441)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 3e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 9335551 - 9335436
Alignment:
Q  6 cagaaataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaataacatt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9335551 cagaaataaccttgaatggccacaacaatatatctctttgaacaaccagatcactaaacttcctaccagttaatctcttagcatctgcaaaaataacatt 9335452  T
Q  106 aatagtacattcccat 121  Q
    ||||||| ||||||||    
T  9335451 aatagtaaattcccat 9335436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 7e-22
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 30775760 - 30775852
Alignment:
Q  6 cagaaataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaa 98  Q
    |||||| ||||||||||||||||||||| |||||| |||||||||| || || ||||| |||||||||||||| || |||||||||| |||||    
T  30775760 cagaaacaaccttgaatggccacaacaaaatatctttttgaacaacagggtcgctaaatttcctaccaattaaccttttagcatctgaaaaaa 30775852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 35132962 - 35133049
Alignment:
Q  14 accttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaataa 101  Q
    |||||||||||||| | || ||||||   ||||||||  |||||||||||||||||||||||||| || |||||||||| ||||||||    
T  35132962 accttgaatggccatagcagtatatcatcttgaacaataggatcactaaacttcctaccaattaaccttttagcatctgaaaaaataa 35133049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 9e-40; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 9e-40
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 8667927 - 8668021
Alignment:
Q  6 cagaaataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||    
T  8667927 cagaaataaccttgaatggccacaacaatatatctctttgaacaacggggtcactaaacttcctaccaattaacctcttagcatctgcaaaaata 8668021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 8671290 - 8671180
Alignment:
Q  6 cagaaataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaataacatt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |  ||||||||||||||||||    
T  8671290 cagaaataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaatta-------acaatctgcaaaaataacatt 8671198  T
Q  106 aatagtacattcccatca 123  Q
    ||||||| ||||||||||    
T  8671197 aatagtaaattcccatca 8671180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 13333116 - 13333024
Alignment:
Q  6 cagaaataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaa 98  Q
    ||||| ||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  13333116 cagaagtaaccttgaatggccacaacattatatcattttgaacaaccggatcactaaacttcctaccaattaacctcttagcatctgaaaaaa 13333024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 8585366 - 8585274
Alignment:
Q  6 cagaaataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaa 98  Q
    |||| |||||||||||||||||||||| ||||||  |||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||    
T  8585366 cagagataaccttgaatggccacaacattatatcattttgaacaacgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 8585274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 6790028 - 6790123
Alignment:
Q  14 accttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaataacattaata 109  Q
    |||||||||||||| ||||  |||||  |||||||||| | |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  6790028 accttgaatggccaaaacatcatatcattttgaacaacagaatcactaaacttcctaccaattaacctcttagcatctgaaaaaataacattaata 6790123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 10494028 - 10493949
Alignment:
Q  12 taaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatct 91  Q
    ||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  10494028 taaccttgaatggccacaacattatatcgttttgaacaaccggatcactaaacttcctgccaattaacctcttagcatct 10493949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 1301980 - 1302064
Alignment:
Q  14 accttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaa 98  Q
    |||||||||||||||||||  || ||| |||||||||| | |||||||||||||||||||||||||||||||||||||| |||||    
T  1301980 accttgaatggccacaacatcatgtctttttgaacaactgaatcactaaacttcctaccaattaatctcttagcatctgaaaaaa 1302064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 8629040 - 8629136
Alignment:
Q  6 cagaaataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaataac 102  Q
    |||||||||||||||||||||| ||||  |||||  |||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||| |||||    
T  8629040 cagaaataaccttgaatggccagaacatgatatccttttgaacaacaggatcactaaacttcctaccaattaacctcttggcatctgaaaatataac 8629136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 8659876 - 8659957
Alignment:
Q  11 ataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctg 92  Q
    ||||||||||||||||||||||  || ||| |||||||||| | |||||||||||||||||||||||||||||| |||||||    
T  8659876 ataaccttgaatggccacaacatcatgtctttttgaacaactgaatcactaaacttcctaccaattaatctctttgcatctg 8659957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 17268455 - 17268552
Alignment:
Q  14 accttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctg-caaaa-ataacattaata 109  Q
    ||||||||||||||| ||| ||||||| |||| || || ||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||    
T  17268455 accttgaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctgtcaaaatataacattaata 17268552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 3147783 - 3147886
Alignment:
Q  9 aaataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaataacattaat 108  Q
    |||| |||||||||||||||||||  |||||  |||||||||| | ||||| |||||||||||||||||| ||||| ||||||   ||||||| ||||||    
T  3147783 aaatgaccttgaatggccacaacatcatatcattttgaacaacagaatcaccaaacttcctaccaattaacctctttgcatctaacaaaataaaattaat 3147882  T
Q  109 agta 112  Q
    ||||    
T  3147883 agta 3147886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 17260757 - 17260844
Alignment:
Q  14 accttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaataa 101  Q
    ||||||||||||||| ||| ||||||| |||| || || |||||||||||||||||||||| || ||||||||||||||  |||||||    
T  17260757 accttgaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaactagtctcttagcatctgtcaaaataa 17260844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 8654958 - 8655043
Alignment:
Q  6 cagaaataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatct 91  Q
    ||||| ||||| |||||||||||||||  |||||  |||||||||  ||||||||| |||||||||||||||| ||||||||||||    
T  8654958 cagaagtaaccatgaatggccacaacatgatatccttttgaacaataggatcactatacttcctaccaattaacctcttagcatct 8655043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 27830524 - 27830450
Alignment:
Q  17 ttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatct 91  Q
    |||||| |||||||   ||||||| ||||||||||   ||| || ||||||||||||||||| ||||||||||||    
T  27830524 ttgaatagccacaagtttatatctttttgaacaacatcatcgctgaacttcctaccaattaacctcttagcatct 27830450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 3e-24; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 7542742 - 7542834
Alignment:
Q  14 accttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaataacatta 106  Q
    |||||||||||||| |||| ||||||   ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| ||||||    
T  7542742 accttgaatggccataacagtatatcatcttgaacaacaggatcactaaacttcctaccaattaacctcttagcatctacaaaaattacatta 7542834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 16661648 - 16661566
Alignment:
Q  10 aataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctg 92  Q
    |||||||||||| |||||||||| ||||||| |||||||||| || |||||||| |||||||||||||| |||||||||||||    
T  16661648 aataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaacctcttagcatctg 16661566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 12235205 - 12235297
Alignment:
Q  14 accttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaataacatta 106  Q
    |||||||||||||||||||  | |||   |||||||||  ||||||||||||||||||||||||| ||||||||||||| |||| ||||||||    
T  12235205 accttgaatggccacaacatcacatcatcttgaacaacttgatcactaaacttcctaccaattaacctcttagcatctgaaaaattaacatta 12235297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 16657169 - 16657080
Alignment:
Q  14 accttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaataaca 103  Q
    ||||||||||||||||| |  |||||  |||||||||| |||||||||||||||||||| ||||| || |||||||||| ||||| ||||    
T  16657169 accttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaacaaca 16657080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 43625930 - 43626010
Alignment:
Q  18 tgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaa 98  Q
    |||||||||||||||  |||||  |||||||||| | |||||||||||||||||| ||||| ||||||||||||| |||||    
T  43625930 tgaatggccacaacatgatatcattttgaacaacagaatcactaaacttcctaccgattaacctcttagcatctggaaaaa 43626010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 12245019 - 12244974
Alignment:
Q  53 ggatcactaaacttcctaccaattaatctcttagcatctgcaaaaa 98  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  12245019 ggatcactaaacttcctaccaattaatctcttagcatctgaaaaaa 12244974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 12258227 - 12258142
Alignment:
Q  20 aatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaataacatt 105  Q
    ||||||||||||| ||||||   |||||| ||  ||||||||||||||||||||||||| ||||||||||||| |||  |||||||    
T  12258227 aatggccacaacattatatcatcttgaactacttgatcactaaacttcctaccaattaacctcttagcatctggaaatttaacatt 12258142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 11999910 - 11999994
Alignment:
Q  14 accttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaa 98  Q
    |||||||||||||| ||||||  |||   |||||||||  ||||||||||||||| ||||||||| ||||||||||||| |||||    
T  11999910 accttgaatggccataacaatccatcatcttgaacaacaagatcactaaacttccaaccaattaacctcttagcatctgaaaaaa 11999994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 39373417 - 39373460
Alignment:
Q  55 atcactaaacttcctaccaattaatctcttagcatctgcaaaaa 98  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||    
T  39373417 atcattaaacttcctaccaattaacctcttagcatctgaaaaaa 39373460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 28220461 - 28220551
Alignment:
Q  8 gaaataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaa 98  Q
    ||||| ||||||||||||||||||  ||||||   ||||||||| |  ||||||||||||||||||||||| ||||||||||||| |||||    
T  28220461 gaaatgaccttgaatggccacaactttatatcatcttgaacaacagagtcactaaacttcctaccaattaacctcttagcatctgaaaaaa 28220551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 3e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 15595552 - 15595642
Alignment:
Q  14 accttgaatggccacaacaatatatctctttgaacaaccgga-tcactaaacttcctaccaattaatctcttagcatctgcaaaaataaca 103  Q
    ||||||||||||||||||  ||||||  ||||||||| | || ||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  15595552 accttgaatggccacaactttatatcattttgaacaaacagaatcactaaacttcctactgattaatctcttagcatctgaaaaaataaca 15595642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 4678204 - 4678126
Alignment:
Q  20 aatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaa 98  Q
    |||||||||||||  || ||| |||||||||| | ||||||| || ||||||||||||| |||||||||||||||||||    
T  4678204 aatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatctgcaaaaa 4678126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 52549172 - 52549098
Alignment:
Q  14 accttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagca 88  Q
    |||||||||| ||| |||||||||||   ||||||||| ||||||||||||||| |||||||||| |||||||||    
T  52549172 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 52549098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 34466449 - 34466362
Alignment:
Q  10 aataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaa 97  Q
    |||||| ||||||||||| ||||  |||||| |||||||| | ||||||||||| || || |||||||| ||||||||||||| ||||    
T  34466449 aataactttgaatggccataacatcatatctgtttgaacatcaggatcactaaattttctgccaattaacctcttagcatctgaaaaa 34466362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 28911126 - 28911207
Alignment:
Q  42 tttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctgcaaaaataacattaatagtacattcccatca 123  Q
    |||||||||| |||||||||||||||||| ||||||  |||||||||||||  ||||||| ||| ||| || |||| |||||    
T  28911126 tttgaacaacgggatcactaaacttcctatcaattatcctcttagcatctgtcaaaataaaattgataataaattctcatca 28911207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 43745357 - 43745441
Alignment:
Q  8 gaaataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaatctcttagcatctg 92  Q
    ||||| |||||||| |||||||||   |||||  |||||||| | | |||| ||||||||||||||||||| |||||||||||||    
T  43745357 gaaatgaccttgaacggccacaacttcatatcattttgaacatcagaatcattaaacttcctaccaattaacctcttagcatctg 43745441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University