View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689-Insertion-19 (Length: 248)
Name: NF4689-Insertion-19
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689-Insertion-19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 2488994 - 2488753
Alignment:
| Q |
7 |
agattgttcatgcagcaaaatttgccggtctaacctgttgcatggaatgatcagttttccatttctgtattcaggctctttgttcttcattaaatgatac |
106 |
Q |
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| T |
2488994 |
agattgttcatgcagcaaaatttgccggtctaacctgttgcatggaatgatcagttttccatttctgtattcaggctctttgttcttcattatatgatac |
2488895 |
T |
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| Q |
107 |
gaaattgctgacacgataatctcttctatatagttactgagaaccattgtgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctg |
206 |
Q |
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| T |
2488894 |
gaaattgctgacacgataatctcttctatatagttactgagaaccattgtgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctg |
2488795 |
T |
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| Q |
207 |
ctaacacttccatgatatggttcttgttatcttgaatctgta |
248 |
Q |
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| T |
2488794 |
ctaacacttccatgatatggttcttgttatcttgaatctgta |
2488753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 242
Target Start/End: Original strand, 41592228 - 41592414
Alignment:
| Q |
56 |
atcagttttccatttctgtattcaggctctttgttcttcattaaatgatacgaaattgctgacacgataatctcttctatatagttactgagaaccattg |
155 |
Q |
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| T |
41592228 |
atcagcttcccatttctgtattcgaggtctttgtttttcatcaaatgatgagagattgctgacacaataatctcttctatatagttactgagaaccattg |
41592327 |
T |
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| Q |
156 |
tgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctgctaacacttccatgatatggttcttgttatcttgaa |
242 |
Q |
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| T |
41592328 |
tgtcttccacacagatggaatccaagtcatcgcaatcaagatcattggctgcaagcacttccgtaatatgatttttattatcctgaa |
41592414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 8842865 - 8842970
Alignment:
| Q |
129 |
cttctatatagttactgagaaccattgtgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctgctaacacttccatgatatggtt |
228 |
Q |
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| T |
8842865 |
cttctatgtagttacaaagaaccattgtgtccgctacacagatggaatcaatgtcatgaatatcaagataattggctgcaaggacttccatgatatggtt |
8842964 |
T |
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| Q |
229 |
cttgtt |
234 |
Q |
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| T |
8842965 |
cttgtt |
8842970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 32248412 - 32248453
Alignment:
| Q |
161 |
gctacacagatggaatccaggtcatgacaatcaagatcattg |
202 |
Q |
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| T |
32248412 |
gctacacagatggaatccaggtcatgacaatcgagatcattg |
32248453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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