View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689-Insertion-2 (Length: 852)
Name: NF4689-Insertion-2
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 264 - 850
Target Start/End: Original strand, 6232884 - 6233465
Alignment:
| Q |
264 |
atctaagttatacttatagacataattaactcaacattttatttcctagatcattagttcttatctagtataactacttgatttgtattttcactaaatg |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6232884 |
atctaagttatacttatagacataattaactcaacattttatttcctagatcattagttcttatctagtataactacttgatttgtattttcactaaatg |
6232983 |
T |
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| Q |
364 |
gtttcattttgctaaattaattagtttttgctaaaattcatgtgaataaggttatgggagataaattcctgatgcagtaacttgcggatgtgttaaaaat |
463 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6232984 |
gtttcattttgctaaattaattagtttttgctaaaatccatgtaaataaggttatgggagataaattcctgatgcagtaacttgcggatgtgttaaaaat |
6233083 |
T |
|
| Q |
464 |
agtgtcctaaaccaaggggccaatattggatgaggccctagtctacaagcctagggttcaaagtttaaagaggtccnnnnnnnnnnnnnattattaatga |
563 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6233084 |
agtgtcctaaaccaaggggccaatattggatgaggccctagcctacaagcctagggttcaaagtttaaagaggtcctttttggttttttattattaatga |
6233183 |
T |
|
| Q |
564 |
tgattttgccatcaatagccaaatcataaatcatactatagtatatggtagacagatttggaatctataactttgtcttatgcaaaagaaatggagaaaa |
663 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6233184 |
tgattttgccatcaatagccaaatcataaatcatactatagtatatggtagacagatttggaatctataactttgtcttatgcaaaagaaatggag-aaa |
6233282 |
T |
|
| Q |
664 |
aatattagacttttattagtctgcactggattgagtttaaaatttagaggggtactgattttgtcttttataataatgataataatggggagccctatct |
763 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6233283 |
aatattagacttttattagtctgcactggattgagttt-aaatttagaggggtactgattttgtcttttataataatgataataatggggagccctatct |
6233381 |
T |
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| Q |
764 |
accactagcataccctgattaaaaatatggtcaacc--aaaaatatacgcctgattaaaaatattggattaatgaatccattctctttt |
850 |
Q |
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|||||||||||||||||||| ||||||| ||||||| |||||||||| ||||||| ||||||||| |||||||||| ||||||||||| |
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| T |
6233382 |
accactagcataccctgatt-aaaatat-gtcaaccaaaaaaatatac-cctgatt-aaaatattgaattaatgaat-cattctctttt |
6233465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 6232686 - 6232887
Alignment:
| Q |
7 |
actatcccgctctcgactcccgtcatccaaagcgtccacgtccctattcccgcgccttggggagattttaaccttgtagccacctcacagattttcacgg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6232686 |
actatcccgctctcgactcccgtcatccaaagcgtccacgtccctattccc-cgccttggggagattttaaccttgtagccacctcacagattttcacgg |
6232784 |
T |
|
| Q |
107 |
ggatgaggttcccgtagggtgcggggttatggtatgatccatgtccgcaaactcctgttggggagactttctcctacgtgttctcattcccacgggaaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6232785 |
ggatgaggttcccgtagggtgcggggttatggtatgatccatgtccgcaaactcctgttggggagactttctcctacgtgttctcattcccacgggaaaa |
6232884 |
T |
|
| Q |
207 |
tct |
209 |
Q |
| |
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||| |
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|
| T |
6232885 |
tct |
6232887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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