View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4689-Insertion-21 (Length: 190)

Name: NF4689-Insertion-21
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4689-Insertion-21
NF4689-Insertion-21
[»] chr7 (2 HSPs)
chr7 (129-189)||(48569141-48569201)
chr7 (8-70)||(48569028-48569090)
[»] chr8 (3 HSPs)
chr8 (8-63)||(10822202-10822257)
chr8 (8-63)||(36145139-36145194)
chr8 (135-187)||(10821885-10821937)


Alignment Details
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 48569141 - 48569201
Alignment:
Q  129 gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacct 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48569141 gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacct 48569201  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 48569028 - 48569090
Alignment:
Q  8 gcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattcattgtgg 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48569028 gcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtgaacattcattgtgg 48569090  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 10822257 - 10822202
Alignment:
Q  8 gcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc 63  Q
    |||||||||||| |||   ||||||||||||||||| ||||||||||| |||||||    
T  10822257 gcattttccagaaaaagtatatgaatcagaggaaactatgcgtaaggtgaacattc 10822202  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 36145139 - 36145194
Alignment:
Q  8 gcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc 63  Q
    |||||||||||| |||   |||||||||||||| |||||||||||||| |||||||    
T  36145139 gcattttccagaaaaagtatatgaatcagaggataccatgcgtaaggtgaacattc 36145194  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 10821937 - 10821885
Alignment:
Q  135 ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatac 187  Q
    ||||||||||| || ||||| |||||||||||| |||||||||| || |||||    
T  10821937 ttgcagtgtgcagaatctgccttgaaatcagtcttaggagatctttcgaatac 10821885  T

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