View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4689-Insertion-24 (Length: 769)

Name: NF4689-Insertion-24
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4689-Insertion-24
NF4689-Insertion-24
[»] chr2 (17 HSPs)
chr2 (345-599)||(25552520-25552774)
chr2 (592-730)||(25552803-25552941)
chr2 (7-143)||(25552138-25552275)
chr2 (205-331)||(25552337-25552463)
chr2 (205-335)||(13109737-13109864)
chr2 (205-335)||(34695769-34695899)
chr2 (205-335)||(34718181-34718311)
chr2 (213-335)||(88759-88881)
chr2 (205-335)||(12130503-12130633)
chr2 (220-335)||(11291929-11292044)
chr2 (205-335)||(9710147-9710277)
chr2 (205-318)||(18344176-18344289)
chr2 (206-335)||(14827273-14827401)
chr2 (205-325)||(26198874-26198994)
chr2 (271-335)||(22845781-22845845)
chr2 (208-324)||(35158719-35158837)
chr2 (289-335)||(43293919-43293965)
[»] chr4 (15 HSPs)
chr4 (205-335)||(2065045-2065175)
chr4 (213-335)||(21321730-21321852)
chr4 (205-335)||(44935947-44936077)
chr4 (205-335)||(18442012-18442142)
chr4 (205-335)||(49951505-49951635)
chr4 (205-335)||(32576913-32577043)
chr4 (205-335)||(37245717-37245847)
chr4 (213-331)||(29655535-29655653)
chr4 (207-335)||(51734837-51734965)
chr4 (300-335)||(6753984-6754019)
chr4 (208-335)||(8754328-8754455)
chr4 (205-335)||(24989799-24989929)
chr4 (205-335)||(41835176-41835306)
chr4 (205-335)||(56065825-56065955)
chr4 (206-269)||(7462591-7462654)
[»] chr1 (13 HSPs)
chr1 (205-335)||(4395350-4395480)
chr1 (205-328)||(52109645-52109768)
chr1 (205-335)||(5609531-5609661)
chr1 (205-335)||(16816662-16816792)
chr1 (205-335)||(14485202-14485332)
chr1 (205-335)||(51113507-51113637)
chr1 (246-335)||(5594267-5594356)
chr1 (205-335)||(48949589-48949719)
chr1 (205-331)||(25682843-25682969)
chr1 (208-335)||(2885422-2885549)
chr1 (206-335)||(44527446-44527576)
chr1 (213-331)||(4898489-4898607)
chr1 (207-335)||(24538681-24538810)
[»] chr5 (13 HSPs)
chr5 (205-319)||(23075024-23075138)
chr5 (205-333)||(22767140-22767268)
chr5 (205-335)||(25731000-25731130)
chr5 (205-335)||(27292626-27292755)
chr5 (205-335)||(27532771-27532901)
chr5 (205-331)||(30573546-30573672)
chr5 (205-335)||(4268291-4268425)
chr5 (206-335)||(11375387-11375516)
chr5 (205-335)||(20205147-20205277)
chr5 (207-331)||(41940605-41940730)
chr5 (213-331)||(8388286-8388404)
chr5 (207-332)||(32632709-32632833)
chr5 (299-335)||(34652126-34652162)
[»] chr8 (13 HSPs)
chr8 (205-335)||(477921-478051)
chr8 (206-331)||(598106-598231)
chr8 (205-335)||(33642629-33642759)
chr8 (205-335)||(8450988-8451118)
chr8 (208-335)||(13415218-13415345)
chr8 (205-335)||(40588595-40588725)
chr8 (205-335)||(11870456-11870586)
chr8 (205-330)||(3606607-3606734)
chr8 (208-335)||(36194486-36194613)
chr8 (291-335)||(34707910-34707954)
chr8 (207-277)||(23854126-23854196)
chr8 (238-335)||(185458-185554)
chr8 (232-325)||(9496997-9497090)
[»] chr7 (16 HSPs)
chr7 (205-335)||(17877590-17877720)
chr7 (205-335)||(30493475-30493605)
chr7 (205-335)||(44481279-44481409)
chr7 (205-335)||(16732125-16732255)
chr7 (205-335)||(17710259-17710389)
chr7 (223-335)||(24139221-24139333)
chr7 (205-335)||(29200821-29200950)
chr7 (205-331)||(3275226-3275353)
chr7 (205-328)||(24251631-24251754)
chr7 (205-335)||(9328467-9328597)
chr7 (205-335)||(16098682-16098815)
chr7 (205-331)||(22289433-22289559)
chr7 (205-335)||(30824360-30824489)
chr7 (205-335)||(47580067-47580196)
chr7 (300-335)||(1581904-1581939)
chr7 (205-332)||(3601844-3601971)
[»] chr3 (13 HSPs)
chr3 (205-335)||(647035-647165)
chr3 (205-335)||(2121273-2121403)
chr3 (213-335)||(42340142-42340264)
chr3 (205-335)||(53497224-53497354)
chr3 (205-335)||(19117585-19117715)
chr3 (205-331)||(26046880-26047006)
chr3 (205-335)||(27608768-27608898)
chr3 (205-335)||(34497237-34497367)
chr3 (205-319)||(2615675-2615789)
chr3 (205-331)||(31341594-31341720)
chr3 (213-335)||(48227568-48227690)
chr3 (205-334)||(27747549-27747680)
chr3 (205-331)||(55213517-55213643)
[»] scaffold0198 (1 HSPs)
scaffold0198 (205-335)||(20350-20480)
[»] chr6 (7 HSPs)
chr6 (205-335)||(14680354-14680484)
chr6 (205-335)||(11731534-11731664)
chr6 (205-335)||(15605859-15605989)
chr6 (205-335)||(21944493-21944623)
chr6 (205-335)||(34104330-34104460)
chr6 (300-335)||(3101267-3101302)
chr6 (208-331)||(15053044-15053167)
[»] scaffold0922 (1 HSPs)
scaffold0922 (205-317)||(147-259)
[»] scaffold0446 (1 HSPs)
scaffold0446 (205-335)||(382-512)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 345 - 599
Target Start/End: Original strand, 25552520 - 25552774
Alignment:
Q  345 ttattttaacgtaacatataacattttaacgtgtttatttccttaacaaataccttaacctttaa-atacttgttaacaagattattttagaatgataac 443  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25552520 ttattttaacgtaacaaataatattttaacgtgtttatttccttaacaaataccttaacctttaagatacttgttaacaagattattttagaatgataac 25552619  T
Q  444 atagttgagatgtctttactatgtgtcattgtgggtcatattgtttacagcacaaagtgctacaagcaagctttatttgtcctaactgcttataacttgt 543  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25552620 atagttgtgatgtctttactatgtgtcactgtgggtcatattgtttacatcacaaattgctacaagcaagctttatttgtcctaactgcttataacttgt 25552719  T
Q  544 cctaattcaaaattactagtgaatctcattgaataataggaatatcaaatatatat 599  Q
    ||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||    
T  25552720 cctaattcaaaattactagtgaatctcgttgaat-ataggattatcaaatatatat 25552774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 592 - 730
Target Start/End: Original strand, 25552803 - 25552941
Alignment:
Q  592 atatatatgacataaaataactgacattttgcatgacatatataacatgaccaacaaaagaattggaaccaagtttaaggaccactgacggcgtagtgat 691  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25552803 atatatatgacataaaataactgacattttgcatgacatatataacatgaccaacaaaagaattggaaccaagtttaaggaccactgacggcgtagtgat 25552902  T
Q  692 tgatcaaagtacacgatctctgttacaacaaccattttg 730  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25552903 tgatcaaagtacacgatctctgttacaacaaccattttg 25552941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 25552138 - 25552275
Alignment:
Q  7 acttttttcttcaccataatgtaatccactagattttttatgctgcggtttttaatga-agcaattgatgtgaatttgtatgtttatttccttgagtttt 105  Q
    |||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  25552138 acttttatcttcaccataatgtaatccactggattttttatgcttcggtttttaatgatagcaattgatgtgaatttgtatgtttaattccttgagtttt 25552237  T
Q  106 ggcctggtccctccgagatgtatttttccacttcttac 143  Q
    |||||||||| ||| |||||||||||||||||| ||||    
T  25552238 ggcctggtccttccaagatgtatttttccactttttac 25552275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 205 - 331
Target Start/End: Original strand, 25552337 - 25552463
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||| ||||||||| ||||||    
T  25552337 cagttatttttacatttcaattttaagatgaaatttgttaagagacaagtgaacatggttgctcatactttagttaggaagacctgttcttaggttagtc 25552436  T
Q  305 accgtattttttattcttatccttctt 331  Q
    |||||||||||||||||||||||||||    
T  25552437 accgtattttttattcttatccttctt 25552463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 13109864 - 13109737
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| |||| || ||||||| ||||| | |||||||| |||||| |||||||| ||||||| |||| |||||||||  |   ||||||    
T  13109864 cagttatctttacattccaacgttgaggtgaagtttgtcaggagacaaacgaacatagttgttcatactttagctagggcgacatgttggt---ttagtc 13109768  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||||||||||||| |||||||||||||||||    
T  13109767 accgtattttttactcttatccttcttgtat 13109737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 34695899 - 34695769
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||||||  ||||||||||| ||| ||||||| |||| || | ||||||| |  | |||    
T  34695899 cagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcttgttcttgggcttgtc 34695800  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||| ||||||||||||||||||||||||||    
T  34695799 accgcattttttattcttatccttcttgtat 34695769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 34718311 - 34718181
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||||||  ||||||||||| ||| ||||||| |||| || | ||||||| |  | |||    
T  34718311 cagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcttgttcttgggcttgtc 34718212  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||| ||||||||||||||||||||||||||    
T  34718211 accgcattttttattcttatccttcttgtat 34718181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 213 - 335
Target Start/End: Original strand, 88759 - 88881
Alignment:
Q  213 tttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcaccgtatt 312  Q
    |||||||| |||||| || ||||| ||| ||  |||||||  ||||||||||| ||| ||||||| |||| || | ||||||| |  |||||||||||||    
T  88759 tttacattccaacttcaacgtgaagtttatttggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtcaccgtatt 88858  T
Q  313 ttttattcttatccttcttgtat 335  Q
    |||||||||||||||||||||||    
T  88859 ttttattcttatccttcttgtat 88881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 12130633 - 12130503
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||||||  ||||||||||| ||| ||||||| ||||| | | | |||||    ||||     
T  12130633 cagttatatttacattccaacttcgaggtgaagtttgttatgagacaagcgaacatggttgctcatactttagctaggagggcctattcttgagctagtt 12130534  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||||||||||||||||||||||||||||    
T  12130533 accgtattttttattcttatccttcttgtat 12130503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 220 - 335
Target Start/End: Complemental strand, 11292044 - 11291929
Alignment:
Q  220 ttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcaccgtattttttatt 319  Q
    |||||||| |||||||| ||||||| ||||| |  ||||||| ||| ||| ||||||| |||| || | ||||||| |  ||||||||||||||||||||    
T  11292044 ttcaacttcaaggtgaagtttgttaggagacgagcgaacatgtttgctcatactttagctaggtcggcttgttcttgggctagtcaccgtattttttatt 11291945  T
Q  320 cttatccttcttgtat 335  Q
    |||||||||| |||||    
T  11291944 cttatccttcctgtat 11291929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 9710147 - 9710277
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||||||  ||||||||||| ||| ||||||| || ||||   ||||||| |  ||||     
T  9710147 cagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctaagacggtctgttcttgggctagta 9710246  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||||||||  ||||||||||||||||||    
T  9710247 accgtatttttagttcttatccttcttgtat 9710277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 205 - 318
Target Start/End: Complemental strand, 18344289 - 18344176
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| |||||| |||||||||||||||| |||| ||  ||||||||||| ||| ||||||| |||| || | |||| ||||| || ||    
T  18344289 cagttatctttacattccaacttcaaggtgaaatttgttaggagataagcgaacatggttgctcatactttagctagggcggcctgttgttagactaatc 18344190  T
Q  305 accgtattttttat 318  Q
    | ||||||||||||    
T  18344189 atcgtattttttat 18344176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 335
Target Start/End: Original strand, 14827273 - 14827401
Alignment:
Q  206 agttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtca 305  Q
    |||||| |||||||| ||||||  |||| || || ||||||| ||||| ||||||||||| ||| ||||||  |||| |||||| ||||| |  ||||||    
T  14827273 agttatctttacattccaacttcgaggtaaagttagttaaga-acaaacgaacatggttgctcatactttatctagggcgacatattcttgggctagtca 14827371  T
Q  306 ccgtattttttattcttatccttcttgtat 335  Q
    ||| ||||| ||||||||| ||||||||||    
T  14827372 ccgcattttctattcttattcttcttgtat 14827401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 205 - 325
Target Start/End: Original strand, 26198874 - 26198994
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||||||||||| ||||||| ||||||| |  |||| |||||||||||  ||| ||||||| ||||  ||| | |||||    |||||    
T  26198874 cagttatctttacatttcaactttgaggtgaagtttgttaggtaacaagtgaacatggtttctcatactttagctagggtgacttcttcttgagctagtc 26198973  T
Q  305 accgtattttttattcttatc 325  Q
    |||| ||||||||||||||||    
T  26198974 accgcattttttattcttatc 26198994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 22845781 - 22845845
Alignment:
Q  271 actttagttaggacgacatgttcttagattagtcaccgtattttttattcttatccttcttgtat 335  Q
    ||||||| |||| |||| ||||||||   |||||||| |||||||||||||||||||||||||||    
T  22845781 actttagctagggcgacctgttcttaagctagtcaccatattttttattcttatccttcttgtat 22845845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 324
Target Start/End: Complemental strand, 35158837 - 35158719
Alignment:
Q  208 ttatttttacatttcaactttaagg--tgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtca 305  Q
    ||||||||||||| |||||| ||||  |||| ||||||| |||||||  |||||| |||| ||| | ||| | |||| || | ||||||| |  ||| ||    
T  35158837 ttatttttacattccaacttcaaggcatgaagtttgttatgagacaagcgaacatagttgctcatagtttcgctagggcggcctgttcttgggctaggca 35158738  T
Q  306 ccgtattttttattcttat 324  Q
    |||||||||||||||||||    
T  35158737 ccgtattttttattcttat 35158719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 43293919 - 43293965
Alignment:
Q  289 tgttcttagattagtcaccgtattttttattcttatccttcttgtat 335  Q
    ||||||| || |||||||||||||||||||  |||||||||||||||    
T  43293919 tgttcttggactagtcaccgtattttttatctttatccttcttgtat 43293965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 9e-32; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 2065045 - 2065175
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| ||||||||||||||| |||||||| ||||||| |||||||| ||||||||||| ||| ||||||| ||||    ||||||||| |  |||||    
T  2065045 cagttatctttacatttcaacttcaaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagctagggtagcatgttcttgggctagtc 2065144  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||||||||||||||||||||||||||||    
T  2065145 accgtattttttattcttatccttcttgtat 2065175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 213 - 335
Target Start/End: Original strand, 21321730 - 21321852
Alignment:
Q  213 tttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcaccgtatt 312  Q
    |||||||| |||||| |||||||| ||| |||||||||||  || |||||||| ||| ||||||| |||| || | ||||||| |  |||||||||||||    
T  21321730 tttacattccaacttcaaggtgaagtttattaagagacaagcgatcatggttgctcatactttagctagggcggcctgttcttgggctagtcaccgtatt 21321829  T
Q  313 ttttattcttatccttcttgtat 335  Q
    |||||||||||||||||||||||    
T  21321830 ttttattcttatccttcttgtat 21321852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 44936077 - 44935947
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| |||||||  ||||||  ||||||||||| ||| | ||||| || |||| ||||||||| | ||||||    
T  44936077 cagttatctttacattccaacttcgaggtgaagtttgttagcagacaagcgaacatggttgctcatagtttagctatgacggcatgttcttgggttagtc 44935978  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||||||||| || |||||||||||||||    
T  44935977 accgtattttttttttttatccttcttgtat 44935947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 18442142 - 18442012
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||| ||| |||||| |||||||| ||||||| |||||||| ||| ||||||| ||| | ||||| |||| || | ||||||| |  |||||    
T  18442142 cagttatctttatattccaacttcaaggtgaagtttgttatgagacaaacgaaaatggttgctcatattttagctagggcggcctgttcttgggctagtc 18442043  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||||||||||| ||| |||||||||||||||    
T  18442042 accgtatttttaatttttatccttcttgtat 18442012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 49951505 - 49951635
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||||||  ||||||||||| ||| ||||||| |||| || | ||||||| |  |||||    
T  49951505 cagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtc 49951604  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |  ||||||||||||||||||||| ||||||    
T  49951605 attgtattttttattcttatccttattgtat 49951635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 32577043 - 32576913
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||||||  ||||||||||| ||| ||||||| |||| |  | ||||||| |  |||||    
T  32577043 cagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcagcctgttcttgggctagtc 32576944  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    || ||||||||  ||||||||||||||||||    
T  32576943 actgtatttttgtttcttatccttcttgtat 32576913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 37245847 - 37245717
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||||||  ||||||||||| ||| ||||||| |||| ||   ||||||| |  |||||    
T  37245847 cagttatctttacattccaacttcgaggtgaagtttgttaggagacaatcgaacatggttgctcatactttagctagggcggtctgttcttgggctagtc 37245748  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||| |||||| | |||||||||||||||||    
T  37245747 accgcatttttaactcttatccttcttgtat 37245717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 29655653 - 29655535
Alignment:
Q  213 tttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcaccgtatt 312  Q
    |||||||||| ||||  || |||| ||||||| |||||||  ||||||||||| ||| ||||||| |||| |||| ||||||| |  || |||||| |||    
T  29655653 tttacatttccacttcgagatgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcgacctgttctttggctaatcaccgcatt 29655554  T
Q  313 ttttattcttatccttctt 331  Q
    ||||||||||||| |||||    
T  29655553 ttttattcttatcattctt 29655535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 207 - 335
Target Start/End: Complemental strand, 51734965 - 51734837
Alignment:
Q  207 gttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcac 306  Q
    ||||| |||||||| ||||||  ||||||| ||||||| | ||||| |||||||||||| ||| ||||||| |||| || | ||||||| |  || | ||    
T  51734965 gttatctttacattccaacttcgaggtgaagtttgttaggtgacaagtgaacatggttgctcatactttagctagggcggcctgttcttgggctaattac 51734866  T
Q  307 cgtattttttattcttatccttcttgtat 335  Q
    ||||| ||| |||||||||||| ||||||    
T  51734865 cgtatctttgattcttatcctttttgtat 51734837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 6754019 - 6753984
Alignment:
Q  300 tagtcaccgtattttttattcttatccttcttgtat 335  Q
    ||||||||||||||||||||||||||||||||||||    
T  6754019 tagtcaccgtattttttattcttatccttcttgtat 6753984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 208 - 335
Target Start/End: Complemental strand, 8754455 - 8754328
Alignment:
Q  208 ttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcacc 307  Q
    |||| |||||||| ||||||  || |||| ||||||| |||||||  ||||||||||| ||  ||||||| |||  ||   ||||||| |  ||||||||    
T  8754455 ttatctttacattccaacttcgagatgaagtttgttatgagacaagcgaacatggttgctcgtactttagatagagcggtctgttctttggatagtcacc 8754356  T
Q  308 gtattttttattcttatccttcttgtat 335  Q
    |||||||||||||||||  |||||||||    
T  8754355 gtattttttattcttatttttcttgtat 8754328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 24989929 - 24989799
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| |||||||||||||||| ||||| ||||| | | ||||||  ||||  || ||||| ||    || ||    
T  24989929 cagttatctttacattccaacttcgaggtgaagtttgttaagagacaaacgaacacggttgcttatactttatctagggtgatatgtttttgagctaatc 24989830  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||| ||||||||||||| ||| ||||||    
T  24989829 accgtactttttattcttattctttttgtat 24989799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 41835306 - 41835176
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||| ||  || |||| ||||||| |||||||  ||||||||||  ||| | ||||| |||| || | ||||||| |  |||||    
T  41835306 cagttatctttacattccaatttcgagatgaagtttgttaggagacaagcgaacatggttcctcatagtttagatagggcggcctgttcttgggctagtc 41835207  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||  ||||||||||||||||| |||||||||    
T  41835206 actatattttttattcttatctttcttgtat 41835176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 56065825 - 56065955
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  || |||| ||||||| |||||||  ||||||||||| ||| |  |||| |||| || | | |  || |  |||||    
T  56065825 cagttatctttacattccaacttcgagatgaagtttgttaggagacaagcgaacatggttgctcatagcttagctagggcggcctatatttgggctagtc 56065924  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||||||||||||||||| ||||||||||    
T  56065925 accgtattttttattcttattcttcttgtat 56065955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 7462654 - 7462591
Alignment:
Q  206 agttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttca 269  Q
    |||||| |||||||||||| ||| | ||||| ||| ||||||| |||||||||||| |||||||    
T  7462654 agttatctttacatttcaattttgaagtgaagtttattaagagtcaaatgaacatgattgttca 7462591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 9e-32; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 4395350 - 4395480
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||||||||||| ||||||| ||||||| |||||||  ||||||||||| ||| ||||||| |||| || | ||||||| |  |||||    
T  4395350 cagttatctttacatttcaactttgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtc 4395449  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||||||||||||||||||||||||||||    
T  4395450 accgtattttttattcttatccttcttgtat 4395480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 205 - 328
Target Start/End: Original strand, 52109645 - 52109768
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| ||||||||  ||||| ||||| || ||||||| ||||||||  ||||| |||||||| ||||||| |||| |||||||||||| || |||||    
T  52109645 cagttatctttacattctaacttcaaggtaaagtttgttatgagacaaacaaacatagttgttcatactttagatagggcgacatgttcttggactagtc 52109744  T
Q  305 accgtattttttattcttatcctt 328  Q
    ||||||||||| ||||||||||||    
T  52109745 accgtatttttaattcttatcctt 52109768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 5609531 - 5609661
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||||||  ||||||||||| ||| || |||| |||| || ||||||||| |  |||||    
T  5609531 cagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatacattagctagggcggcatgttcttgggctagtc 5609630  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    || ||||||||||||||||||||||||||||    
T  5609631 actgtattttttattcttatccttcttgtat 5609661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 16816792 - 16816662
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||||||||||| ||||||| |||| ||  ||||||||||| ||| |||||||||||| |||| | ||||| |  |||||    
T  16816792 cagttatctttacattccaactttaaggtgaagtttgttaggagagaagagaacatggttgctcatactttagttagggcgacttattcttgggctagtc 16816693  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||||||||||| ||||||| ||| ||||    
T  16816692 accgtattttttatccttatccatctcgtat 16816662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 14485202 - 14485332
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    |||||||||||||||| ||||||||||||||| ||  ||| |||||||| |||||| |||| ||| ||||||| |||| || | |||||||    ||||     
T  14485202 cagttatttttacattccaactttaaggtgaagttcattaggagacaaacgaacatagttgctcatactttagctagggcggcttgttcttgagctagta 14485301  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    | | |||||||||||||||||||||||||||    
T  14485302 atcatattttttattcttatccttcttgtat 14485332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 51113507 - 51113637
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| || ||||| ||||||  ||||||| ||||||| |||| ||  ||||||||||| ||| |  |||| |||| |||| ||||||| | ||||||    
T  51113507 cagttatcttaacattccaacttcgaggtgaagtttgttaggagagaagcgaacatggttgctcatagcttagctagggcgacctgttcttgggttagtc 51113606  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||||||||||||||||| ||||||||||    
T  51113607 accgtattttttattcttattcttcttgtat 51113637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 246 - 335
Target Start/End: Original strand, 5594267 - 5594356
Alignment:
Q  246 gagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcaccgtattttttattcttatccttcttgtat 335  Q
    |||||||  ||||||||||| ||| ||||||  ||||||| ||||||||| || || |||||||||||||||||||||||||||||||||    
T  5594267 gagacaagcgaacatggttgctcatactttaactaggacggcatgttcttggactaatcaccgtattttttattcttatccttcttgtat 5594356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 48949719 - 48949589
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||||||  ||||||||||  ||| |  |||| |||| |  | ||||||| |  |||||    
T  48949719 cagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttactcatagcttagctagggcagcctgttcttgggctagtc 48949620  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||||||||||||||||||||||||||||    
T  48949619 accgtattttttattcttatccttcttgtat 48949589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 205 - 331
Target Start/End: Original strand, 25682843 - 25682969
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| ||||||||  ||||| |||||||| ||||||| |||||||  || |||||||| ||| ||||||| ||||  | ||||||||| | ||||||    
T  25682843 cagttatctttacattctaacttcaaggtgaagtttgttaggagacaagcgagcatggttgctcatactttagctagggaggcatgttcttgggttagtc 25682942  T
Q  305 accgtattttttattcttatccttctt 331  Q
    |||||| |||| |||| |||| |||||    
T  25682943 accgtacttttaattcctatctttctt 25682969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 335
Target Start/End: Original strand, 2885422 - 2885549
Alignment:
Q  208 ttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcacc 307  Q
    |||| |||||||||||||||   |||||| ||||||| || ||||  ||||||| ||| ||| ||||||| |||| |||| ||||||| |  ||||||||    
T  2885422 ttatctttacatttcaacttcgtggtgaagtttgttaggatacaagcgaacatg-ttgctcatactttagctagggcgacctgttcttgggctagtcacc 2885520  T
Q  308 gta-ttttttattcttatccttcttgtat 335  Q
    ||| ||||||||||||||| |||||||||    
T  2885521 gtatttttttattcttatcattcttgtat 2885549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 335
Target Start/End: Original strand, 44527446 - 44527576
Alignment:
Q  206 agttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtca 305  Q
    |||||| |||||||| |||||| |||||||| ||| ||| |||||||  |||||||| || ||| ||||||  |||| || | ||||||| | ||| |||    
T  44527446 agttatctttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggctgctcatactttaactagggcggcctgttcttgggttaatca 44527545  T
Q  306 ccgta-ttttttattcttatccttcttgtat 335  Q
    ||||| ||||||||| |||||||| ||||||    
T  44527546 ccgtatttttttattattatcctttttgtat 44527576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 4898607 - 4898489
Alignment:
Q  213 tttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcaccgtatt 312  Q
    |||||||||||||||  | || || ||||||| |||||||| ||| ||| ||| ||| |||||||||||| |||| |||||||   |||| | | |||||    
T  4898607 tttacatttcaacttcgatgtaaagtttgttaggagacaaacgaatatgattgctcatactttagttaggccgacctgttcttgagttagacgctgtatt 4898508  T
Q  313 ttttattcttatccttctt 331  Q
    ||||||||| ||| |||||    
T  4898507 ttttattctcatcattctt 4898489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 335
Target Start/End: Original strand, 24538681 - 24538810
Alignment:
Q  207 gttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcac 306  Q
    ||||| ||||||||  |||||| ||||||| || |||| || ||||  ||||||| ||| ||| ||||| | |||||| |||||||||| |  |||||||    
T  24538681 gttatctttacattctaactttgaggtgaagttcgttaggaaacaagcgaacatgattgctcatacttttgctaggacaacatgttcttcggctagtcac 24538780  T
Q  307 cgtattttttattctt-atccttcttgtat 335  Q
    | |||||||| || || |||||||||||||    
T  24538781 catatttttttttttttatccttcttgtat 24538810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 6e-27; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 205 - 319
Target Start/End: Original strand, 23075024 - 23075138
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||||||||||| ||||||| |||||||  ||||||||||| ||| | ||||| ||||||||||||||||| |  |||||    
T  23075024 cagttatgtttacattccaactttaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctaggacgacatgttcttgggctagtc 23075123  T
Q  305 accgtattttttatt 319  Q
    |||||||||||||||    
T  23075124 accgtattttttatt 23075138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 205 - 333
Target Start/End: Complemental strand, 22767268 - 22767140
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||||||| ||||||||||| ||| ||||||| || | || ||||||||| |  |||||    
T  22767268 cagttatctttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagctaaggcggcatgttcttgggctagtc 22767169  T
Q  305 accgtattttttattcttatccttcttgt 333  Q
    ||||||||||| |||||||| ||||||||    
T  22767168 accgtatttttaattcttattcttcttgt 22767140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 25731000 - 25731130
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||| ||  ||||||||||| ||| ||||||| |||| || | ||||||| |  |||||    
T  25731000 cagttatatttacattccaacttccaggtgaagtttgttaggagataagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtc 25731099  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    || ||||||||||||||||||||||||||||    
T  25731100 actgtattttttattcttatccttcttgtat 25731130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 27292626 - 27292755
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| |||||| || ||||| ||| | | |||||||  ||||||||||| ||| ||||||| ||||  ||||||||||| |  |||||    
T  27292626 cagttatctttacattccaacttcaaagtgaagtttatcaggagacaagcgaacatggttgctcatactttagctaggg-gacatgttcttgggctagtc 27292724  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||||||||||||||||||||| |||||||||    
T  27292725 accgtattttttattcttatcattcttgtat 27292755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 27532901 - 27532771
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||||||  ||||||||||  | | ||||||| ||||  ||||||||||| |  || ||    
T  27532901 cagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttacttatactttagctagggtgacatgttcttgggctaatc 27532802  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    || ||||||||||||||||||||||| ||||    
T  27532801 actgtattttttattcttatccttctcgtat 27532771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 205 - 331
Target Start/End: Complemental strand, 30573672 - 30573546
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||| |||| || ||| |||||||||||||||  ||||||  ||||||||||||||| | ||||| || | ||   |||| || | ||||||    
T  30573672 cagttatctttatattttaattttgaggtgaaatttgttagaagacaagcgaacatggttgttcatattttagctaaggcggtctgtttttgggttagtc 30573573  T
Q  305 accgtattttttattcttatccttctt 331  Q
    |||||||||||||||||||||||||||    
T  30573572 accgtattttttattcttatccttctt 30573546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 4268291 - 4268425
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| |||||| |||||||| ||| ||| |||||||  ||||||||||| ||| ||||||  |||| || ||||||||| |  |||||    
T  4268291 cagttatctttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggttgctcatactttatctagggcggcatgttcttgggctagtc 4268390  T
Q  305 accgta----ttttttattcttatccttcttgtat 335  Q
    ||||||    ||||||||| |||||||||||||||    
T  4268391 accgtattttttttttattattatccttcttgtat 4268425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 206 - 335
Target Start/End: Complemental strand, 11375516 - 11375387
Alignment:
Q  206 agttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtca 305  Q
    |||||| |||||||| |||||   ||||||| |||||||||||||||  |||||| |||| ||| ||||||| |||| || | ||||||| |  || |||    
T  11375516 agttatctttacattccaactccgaggtgaagtttgttaagagacaagcgaacatagttgctcatactttagctagggcggcctgttcttgggctattca 11375417  T
Q  306 ccgtattttttattcttatccttcttgtat 335  Q
    |||||||||| ||| |||||||||||||||    
T  11375416 ccgtatttttaatttttatccttcttgtat 11375387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 20205147 - 20205277
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||||||  ||||||||||| ||| ||||||| |||| |  | | ||||| |   ||||    
T  20205147 cagttatctttacattccaacttctaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcagcctattcttgggccagtc 20205246  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    | ||||||||| |||||||||||||||||||    
T  20205247 aacgtatttttgattcttatccttcttgtat 20205277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 207 - 331
Target Start/End: Complemental strand, 41940730 - 41940605
Alignment:
Q  207 gttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcac 306  Q
    ||||| |||||||| ||||||  ||||||| ||||||| |||||||  ||||||| ||| | | ||||||| ||||||  | |||| || |  |||||||    
T  41940730 gttatctttacattccaacttcgaggtgaagtttgttaggagacaagagaacatgattgctaatactttagctaggactgcttgttattgggctagtcac 41940631  T
Q  307 cgtatttttt-attcttatccttctt 331  Q
    |||||||||| |||||||||||||||    
T  41940630 cgtatttttttattcttatccttctt 41940605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 8388286 - 8388404
Alignment:
Q  213 tttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcaccgtatt 312  Q
    |||||||| ||||||  ||| ||| ||||||| |||||||  ||||||||||| ||| |  |||| ||||  |   ||||||| |  |||||||||||||    
T  8388286 tttacattccaacttcgaggggaagtttgttaggagacaagcgaacatggttgctcatagcttagctagggtggtttgttcttgggctagtcaccgtatt 8388385  T
Q  313 ttttattcttatccttctt 331  Q
    |||||||||||||||||||    
T  8388386 ttttattcttatccttctt 8388404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 332
Target Start/End: Original strand, 32632709 - 32632833
Alignment:
Q  207 gttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcac 306  Q
    ||||| ||||||||  |||||  ||||||  ||| ||| |||||||  |||||| ||||  || ||||||| |||| || | ||||||| |  |||||||    
T  32632709 gttatctttacattctaacttcgaggtgacgtttattatgagacaagcgaacatagttgcccatactttagctagg-cggcctgttcttgggctagtcac 32632807  T
Q  307 cgtattttttattcttatccttcttg 332  Q
    ||||||||||||||||||||||||||    
T  32632808 cgtattttttattcttatccttcttg 32632833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 34652162 - 34652126
Alignment:
Q  299 ttagtcaccgtattttttattcttatccttcttgtat 335  Q
    ||||||||||||||||||||||||||| |||||||||    
T  34652162 ttagtcaccgtattttttattcttatctttcttgtat 34652126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 478051 - 477921
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| |||||| |||||||| ||||||| |||||||  ||||||||||| ||| || |||| |||| || | ||||||| |  || ||    
T  478051 cagttatctttacattccaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcataccttagctagggcgtcctgttcttgggctaatc 477952  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||||||||||||||||||||||||||||    
T  477951 accgtattttttattcttatccttcttgtat 477921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 206 - 331
Target Start/End: Complemental strand, 598231 - 598106
Alignment:
Q  206 agttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtca 305  Q
    |||||| |||||||||||||||   |||||||||||||| |||||||  ||||||||||| ||| ||||||| || | ||   |||||||||  ||||||    
T  598231 agttatctttacatttcaacttcgtggtgaaatttgttaggagacaagcgaacatggttgctcatactttagctaaggcggtctgttcttaggctagtca 598132  T
Q  306 ccgtattttttattcttatccttctt 331  Q
    ||||||||||||||||||||||||||    
T  598131 ccgtattttttattcttatccttctt 598106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 33642759 - 33642629
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| |||||| |||| ||| ||||||| |||||||  ||||||||||||||| ||||||| ||||  |   ||||||| |  |||||    
T  33642759 cagttatctttacattccaacttcaaggcgaagtttgttaggagacaagcgaacatggttgttcatactttagctagggtggtctgttcttgggctagtc 33642660  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||||||||||||||||||||| |||||||||    
T  33642659 accgtattttttattcttatcattcttgtat 33642629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 8451118 - 8450988
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| ||||||||  |||||  ||||||| ||||||| |||||||  ||||||||||||||| ||| |||||||| || |    ||||||  |||||    
T  8451118 cagttatctttacattcaaacttcgaggtgaagtttgttangagacaagcgaacatggttgttcatactctagttagggcggccctgtcttaggctagtc 8451019  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||||||||||| ||||||||||||||||    
T  8451018 accgtattttttatccttatccttcttgtat 8450988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 208 - 335
Target Start/End: Original strand, 13415218 - 13415345
Alignment:
Q  208 ttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcacc 307  Q
    |||| |||||||| |||||| |||||||| |||| || |||||||  ||||||||||| ||| ||||||| |||| ||   ||||||| |  ||||||||    
T  13415218 ttatctttacattccaacttcaaggtgaagtttgctaggagacaagcgaacatggttgctcatactttagctagggcggtctgttcttgggctagtcacc 13415317  T
Q  308 gtattttttattcttatccttcttgtat 335  Q
    |||||||||||| |||||||||||||||    
T  13415318 gtattttttatttttatccttcttgtat 13415345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 40588725 - 40588595
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||||||  ||||||| |||  || ||||||| |||| || | ||||||| |  |||||    
T  40588725 cagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatgattgcacatactttagctagggcggcctgttcttgggctagtc 40588626  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||||||||||||||| |||||||||||||||    
T  40588625 accgtattttttatttttatccttcttgtat 40588595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 11870456 - 11870586
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| ||||||||  |||||  ||||||| ||||||| |||||||  ||||||||||| ||| ||||||| |||| | || ||||||| |  || ||    
T  11870456 cagttatctttacattctaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcaacctgttcttgggctaatc 11870555  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||| ||||||||||||||||||| |||||||    
T  11870556 accatattttttattcttatcctacttgtat 11870586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 205 - 330
Target Start/End: Complemental strand, 3606734 - 3606607
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacga--catgttcttagattag 302  Q
    ||||||| ||||||||  |||||  ||||||| ||||||| |||||||  ||| ||||||||||| ||||||| ||||  ||  | |||||||||  |||    
T  3606734 cagttatctttacattctaacttcgaggtgaagtttgttaggagacaagcgaatatggttgttcatactttagctagggtgacgcctgttcttaggctag 3606635  T
Q  303 tcaccgtattttttattcttatccttct 330  Q
    ||||||||||||| ||||||||| ||||    
T  3606634 tcaccgtatttttaattcttatcattct 3606607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 208 - 335
Target Start/End: Complemental strand, 36194613 - 36194486
Alignment:
Q  208 ttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcacc 307  Q
    |||| |||| ||||||| ||  || |||| ||||||| |||||||   |||||||||| ||| | ||||| ||||  |||||||||||    ||||||||    
T  36194613 ttatctttatatttcaatttcgagatgaagtttgttaggagacaagaaaacatggttgctcatagtttagctagggtgacatgttcttgagctagtcacc 36194514  T
Q  308 gtattttttattcttatccttcttgtat 335  Q
    |||||||| |||||||||||||||||||    
T  36194513 gtatttttaattcttatccttcttgtat 36194486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 34707954 - 34707910
Alignment:
Q  291 ttcttagattagtcaccgtattttttattcttatccttcttgtat 335  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||    
T  34707954 ttcttagattagtcatcgtattttttattcttattcttcttgtat 34707910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 277
Target Start/End: Original strand, 23854126 - 23854196
Alignment:
Q  207 gttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttag 277  Q
    ||||| |||||||| |||||| |||||||| ||||||| |||||||  ||||||||||| ||| |||||||    
T  23854126 gttatctttacattccaacttcaaggtgaactttgttaggagacaagcgaacatggttgctcatactttag 23854196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 185554 - 185458
Alignment:
Q  238 tttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcaccgtattttttattcttatccttcttgtat 335  Q
    ||||||| |||||||  |||||| |||| ||| | ||||| |||| |||| || |||| ||| |||||||| |||||| |||||||||||||||||||    
T  185554 tttgttaggagacaagcgaacatagttggtcatagtttagctagggcgacctgatcttggat-agtcaccgcatttttaattcttatccttcttgtat 185458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 232 - 325
Target Start/End: Original strand, 9496997 - 9497090
Alignment:
Q  232 gtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcaccgtattttttattcttatc 325  Q
    ||||| ||| ||| |||||||  |||||| |||| | | ||||||| |||| || | ||||||| || ||||||||||||||||||||||||||    
T  9496997 gtgaagtttattaggagacaagcgaacatagttgcttatactttagctagggcggcctgttcttggactagtcaccgtattttttattcttatc 9497090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 17877590 - 17877720
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||||||| ||  ||||||| ||||||| |||||||  || |||||||| ||| ||||||| ||||||| |||||| || |  |||||    
T  17877590 cagttatctttacatttcaatttcgaggtgaagtttgttatgagacaagcgaccatggttgctcatactttaggtaggacggcatgttattgggctagtc 17877689  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||||||||||||||| |||||||||||||||    
T  17877690 accgtattttttatttttatccttcttgtat 17877720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 30493605 - 30493475
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| ||||||||||||||| |  ||||| ||||||| |||||||   |||||||||||||| ||||||| |||| ||   ||||||| |  |||||    
T  30493605 cagttatctttacatttcaacttcatagtgaagtttgttaggagacaaccaaacatggttgttcatactttagctagggcggtctgttcttgggctagtc 30493506  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||||||||||||||||||||||||||||    
T  30493505 accgtattttttattcttatccttcttgtat 30493475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 44481279 - 44481409
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||||||||||  ||||||| ||||||| |||||||  ||||||||||| ||| ||||||| |||| || | ||||||| |  |||||    
T  44481279 cagttatctttacatttcaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtc 44481378  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||| |||||||||||||||||| ||||||||    
T  44481379 accatattttttattcttatccatcttgtat 44481409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 16732125 - 16732255
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||||||  ||||||||||| ||| ||||||| |||| ||   ||||||| |  |||||    
T  16732125 cagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggactgttcttgggctagtc 16732224  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||||||||||||||||||||| ||||||    
T  16732225 accgtattttttattcttatcctttttgtat 16732255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 17710259 - 17710389
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||||||  ||||||||||| ||| ||||||| |||| ||   ||||||| |  |||||    
T  17710259 cagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggactgttcttgggctagtc 17710358  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||||||||||||||||||||| ||||||    
T  17710359 accgtattttttattcttatcctttttgtat 17710389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 223 - 335
Target Start/End: Original strand, 24139221 - 24139333
Alignment:
Q  223 aactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcaccgtattttttattctt 322  Q
    ||||| |||||||| ||||||| |||||||  ||||||||||| ||| ||||||| |||| || | ||||||| |  ||||||||| |||||||||||||    
T  24139221 aacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtcaccgcattttttattctt 24139320  T
Q  323 atccttcttgtat 335  Q
    |||||||||||||    
T  24139321 atccttcttgtat 24139333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 29200950 - 29200821
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||||||| ||||||||||| ||| ||||||| |||| ||   ||||||| |  |||||    
T  29200950 cagttatctttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagctagggcggtctgttcttgggctagtc 29200851  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    || ||||||||||||||||| ||||||||||    
T  29200850 actgtattttttattcttat-cttcttgtat 29200821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 205 - 331
Target Start/End: Original strand, 3275226 - 3275353
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttca-aactttagttaggacgacatgttcttagattagt 303  Q
    ||||||| |||||||| ||||||  ||||||| |||||||||||||||  ||||||||||| ||| | ||| || |||| || | |||||||||  ||||    
T  3275226 cagttatctttacattccaacttcgaggtgaagtttgttaagagacaagcgaacatggttgatcatagcttaagctagggcggcctgttcttaggctagt 3275325  T
Q  304 caccgtattttttattcttatccttctt 331  Q
    |||||||||||| ||| |||||||||||    
T  3275326 caccgtatttttaatttttatccttctt 3275353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 205 - 328
Target Start/End: Original strand, 24251631 - 24251754
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||||||  ||||||||||| ||| ||||||| |||| || | |||||||    |||||    
T  24251631 cagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgagctagtc 24251730  T
Q  305 accgtattttttattcttatcctt 328  Q
    ||||||||||| ||||||||||||    
T  24251731 accgtatttttaattcttatcctt 24251754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 9328597 - 9328467
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  | ||||| ||||||| |||||||  ||||||||||| ||| ||||||| || |||| | | ||||| |  |||||    
T  9328597 cagttatctttacattccaacttcgatgtgaagtttgttaggagacaagcgaacatggttgctcatactttagctacgacgtcctattcttgggctagtc 9328498  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||||||||||| ||| |||||||||||||||    
T  9328497 accgtatttttaatttttatccttcttgtat 9328467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 16098682 - 16098815
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| |||||| |||||||| ||||||| |||||||  ||||||||||| ||| | ||||| |||| || | ||||| |    |||||    
T  16098682 cagttatctttacattccaacttcaaggtgaagtttgttatgagacaagcgaacatggttgctcatattttagctagggcggcctgttcatgagctagtc 16098781  T
Q  305 accgta---ttttttattcttatccttcttgtat 335  Q
    ||||||   ||||||||| |||||||||||||||    
T  16098782 accgtatttttttttattattatccttcttgtat 16098815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 331
Target Start/End: Original strand, 22289433 - 22289559
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||  ||||||| |||||||  ||||||||||| ||| |  |||| |||| || | |||||||  | ||||     
T  22289433 cagttatctttacattccaacttcgaggtgatgtttgttaggagacaagcgaacatggttgctcatagcttagctagggcggcctgttcttgaactagtt 22289532  T
Q  305 accgtattttttattcttatccttctt 331  Q
    ||||||||||||||| |||||||||||    
T  22289533 accgtattttttatttttatccttctt 22289559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 30824489 - 30824360
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||| | ||||| ||||||| |||| ||  ||||||||||| ||| || ||| |||||  | | ||||||| |  |||||    
T  30824489 cagttatctttacattccaactttgaagtgaagtttgttaggagataagcgaacatggttgctcataccttaattaggtggtc-tgttcttgggctagtc 30824391  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||| ||||||||||||||||| |||||||||    
T  30824390 accatattttttattcttatctttcttgtat 30824360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 47580067 - 47580196
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||| ||| ||||||  ||||||| |||| || |||||||  ||||||||||| |||  ||| ||||| |||| | ||||||| |  |||||    
T  47580067 cagttatctttatattccaacttcgaggtgaagtttggtaggagacaagcgaacatggttgctcattcttcagttaagacggcctgttcttgggctagtc 47580166  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||| |||||||||| |||||||||||||    
T  47580167 accgta-tttttattctcatccttcttgtat 47580196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 300 - 335
Target Start/End: Original strand, 1581904 - 1581939
Alignment:
Q  300 tagtcaccgtattttttattcttatccttcttgtat 335  Q
    ||||||||||||||||||||||||||||||||||||    
T  1581904 tagtcaccgtattttttattcttatccttcttgtat 1581939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 205 - 332
Target Start/End: Original strand, 3601844 - 3601971
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| ||||||||  || ||  ||||||| ||||||| |||||||  ||||||||||| ||| | ||||| |||| ||   |||| || |  | |||    
T  3601844 cagttatctttacattctaaattcgaggtgaagtttgttaggagacaatcgaacatggttgctcatagtttagctagggcgggctgttgttgggcttgtc 3601943  T
Q  305 accgtattttttattcttatccttcttg 332  Q
    ||||||||||||||||||||||||||||    
T  3601944 accgtattttttattcttatccttcttg 3601971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 647165 - 647035
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||||||||||| |||||||| ||||||||||| ||| |||||||||||| || | ||||||| || || ||    
T  647165 cagttatctttacattccaacttcgaggtgaaatttgttaggagacaaacgaacatggttgctcatactttagttagggcggcctgttcttggactaatc 647066  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||||||||||| | | ||||| |||||||||    
T  647065 accgtatttttgaattttatctttcttgtat 647035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 2121273 - 2121403
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| ||||||| |||||||  |||| || ||||||| |||||||  ||||||||||| ||| |||||||||||| ||   ||||||| | |||||     
T  2121273 cagttatctttacatctcaacttcgaggtaaagtttgttaggagacaagcgaacatggttgctcatactttagttagggcggtctgttcttgggttagtt 2121372  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||||||||||||||||||||| |||||||||    
T  2121373 accgtattttttattcttatcattcttgtat 2121403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 213 - 335
Target Start/End: Complemental strand, 42340264 - 42340142
Alignment:
Q  213 tttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcaccgtatt 312  Q
    |||||||| ||||||  ||||||| ||||||| |||||||  ||||||||||| ||| ||||||| |||| || | ||||||| |  |||||||||||||    
T  42340264 tttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcacactttagatagggcggcctgttctttggctagtcaccgtatt 42340165  T
Q  313 ttttattcttatccttcttgtat 335  Q
    ||| ||| |||||||||||||||    
T  42340164 tttaatttttatccttcttgtat 42340142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 53497224 - 53497354
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| |||||| |||||||| ||| ||| |||||||  |||||||| || ||| ||||||| |||| |  | ||||||| |  |||||    
T  53497224 cagttatctttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggctgctcatactttagctagggcagcctgttcttgggctagtc 53497323  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||||||||||||||| |||||||||||||||    
T  53497324 accgtattttttattattatccttcttgtat 53497354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 19117715 - 19117585
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||||||| |||| ||| ||| ||||||| ||||||| ||||||   |||||| |||| ||| |  |||| |||| || | |||||||||  |||||    
T  19117715 cagttatttttgcattccaaatttgaggtgaagtttgttaggagacagtcgaacatagttgctcatagcttagctaggtcggcctgttcttaggctagtc 19117616  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||||||||||| |||||||||||||||||||    
T  19117615 accgtatttttgattcttatccttcttgtat 19117585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 205 - 331
Target Start/End: Original strand, 26046880 - 26047006
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| ||||||||  |||||| ||||||  ||||||| |||||||  ||||||||||| ||| ||||||| |||| || | | ||||| |  |||||    
T  26046880 cagttatctttacattctaactttgaggtgacgtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcttattcttgggctagtc 26046979  T
Q  305 accgtattttttattcttatccttctt 331  Q
    ||||||||||| |||||||||||||||    
T  26046980 accgtatttttaattcttatccttctt 26047006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 27608898 - 27608768
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  || |||| ||||||| |||||||  ||||||||||| ||| |  |||| |||  || | ||||||| |  |||||    
T  27608898 cagttatctttacattccaacttcgagctgaagtttgttaggagacaagcgaacatggttgctcatagcttagctagagcggcctgttcttgggctagtc 27608799  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||||||||||||||||||||||||||||    
T  27608798 accgtattttttattcttatccttcttgtat 27608768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 34497367 - 34497237
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| |||||||  ||||||||||| ||| |  |||| |||| || | ||||||| |  |||||    
T  34497367 cagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatagcttagctagggcggcctgttcttgggctagtc 34497268  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||||||||||||||| ||||||||| |||||    
T  34497267 accgtattttttatttttatccttcatgtat 34497237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 205 - 319
Target Start/End: Original strand, 2615675 - 2615789
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    |||||||||||||||| |||| |  || |||| ||||||| |||||||| ||||||||||| ||| ||||||  |||| |||| ||||||| |  |||||    
T  2615675 cagttatttttacattccaacctcgagatgaagtttgttaggagacaaacgaacatggttgctcatactttaactagggcgacctgttcttgggctagtc 2615774  T
Q  305 accgtattttttatt 319  Q
    |||||| ||||||||    
T  2615775 accgtaatttttatt 2615789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 205 - 331
Target Start/End: Complemental strand, 31341720 - 31341594
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| |||||| |||||||| ||| ||| ||||||||   ||||||||| ||| || ||||||||| |  |  |||||| |  |||||    
T  31341720 cagttatctttacattccaacttcaaggtgaagtttattaggagacaaactgacatggttgctcataccttagttagggcagccggttcttgggctagtc 31341621  T
Q  305 accgtattttttattcttatccttctt 331  Q
    ||||||||||| |||||||||||||||    
T  31341620 accgtatttttgattcttatccttctt 31341594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 335
Target Start/End: Original strand, 48227568 - 48227690
Alignment:
Q  213 tttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcaccgtatt 312  Q
    |||||||| ||||||  ||||||||||||||| |||||||   || ||||||  ||| ||||||| |||| |||| ||||||| | ||| || || ||||    
T  48227568 tttacattccaacttcgaggtgaaatttgttaggagacaagcaaatatggttcctcatactttagctagggcgacttgttcttgggttattcgccatatt 48227667  T
Q  313 ttttattcttatccttcttgtat 335  Q
    ||||||| ||||| |||||||||    
T  48227668 ttttatttttatctttcttgtat 48227690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 334
Target Start/End: Complemental strand, 27747680 - 27747549
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttag---gacgacatgttcttagatta 301  Q
    ||||||| |||||||| ||||||  ||||||| |||||||||||||||  |||||| |||| ||| ||||||  |||   ||||   | ||||| |  ||    
T  27747680 cagttatctttacattccaacttcgaggtgaagtttgttaagagacaagcgaacatagttgctcatactttatctaggttgacggtctattctt-gggta 27747582  T
Q  302 gtcaccgtattttttattcttatccttcttgta 334  Q
    |||||||||||||| ||||||||||||||||||    
T  27747581 gtcaccgtatttttgattcttatccttcttgta 27747549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 331
Target Start/End: Original strand, 55213517 - 55213643
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| ||||| || ||||||  ||||||||||||||| |||| ||  ||||||||||| | | ||||||  |||| || |  |||||| |  |||||    
T  55213517 cagttatctttacgttccaacttcgaggtgaaatttgttaggagaaaagcgaacatggttgcttatactttaactagggcggccggttcttgggctagtc 55213616  T
Q  305 accgtattttttattcttatccttctt 331  Q
    || ||||||||||||||||| ||||||    
T  55213617 actgtattttttattcttattcttctt 55213643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 20350 - 20480
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| ||||||| |||||||| ||||||| ||||||| |||||||  ||| ||| ||  ||| ||||||| |||| | || ||||||| |  |||||    
T  20350 cagttatctttacatgtcaactttgaggtgaagtttgttaggagacaagcgaatatgattactcatactttagctagggcaacctgttcttgggctagtc 20449  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    | ||||||||||||||||||| |||||||||    
T  20450 atcgtattttttattcttatcattcttgtat 20480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 14680354 - 14680484
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| ||||||   ||||||||||| ||| ||||||  |||| || | |||||| ||  |||||    
T  14680354 cagttatctttacattccaacttcgaggtgaagtttgttaggagacatgcgaacatggttgctcatactttaactagggcggcctgttctcaggctagtc 14680453  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||||||||||||||| | |||||||||||||    
T  14680454 accgtattttttattttcatccttcttgtat 14680484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 11731664 - 11731534
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| ||||||| ||| |||  ||||||||||| ||| ||||||| |||| |  | || |||| |  |||||    
T  11731664 cagttatctttacattccaacttcgaggtgaagtttgttaggaggcaagcgaacatggttgctcatactttagctagggcagcctgctcttgggctagtc 11731565  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||| |||||||||||||||| ||||||||||    
T  11731564 accatattttttattcttattcttcttgtat 11731534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 15605989 - 15605859
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  ||||||| |||||||  ||||||  ||||||||||| |||  |||||| |||| || | | ||||| |  |||||    
T  15605989 cagttatctttacattccaacttcgaggtgaattttgttagcagacaagcgaacatggttgctcatgctttagctagggcggcttattcttgggctagtc 15605890  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    ||| ||||| |||||||||||||||||||||    
T  15605889 accatatttattattcttatccttcttgtat 15605859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 21944623 - 21944493
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    |||||||||||| ||| ||||||  | ||||| |||||||| ||||||  || ||| |||| ||| |||||||||||  |  || ||||||    |||||    
T  21944623 cagttatttttatattccaacttcgatgtgaagtttgttaaaagacaagcgatcattgttgctcatactttagttagagcagcaggttcttgtgctagtc 21944524  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||||||||||||||||||||||||||||    
T  21944523 accgtattttttattcttatccttcttgtat 21944493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 34104460 - 34104330
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| ||||||||  |||||  ||||||| ||||||| |||||||   |||||||||| ||| |  |||| || | || ||||||||| |  |||||    
T  34104460 cagttatctttacattcgaacttcgaggtgaagtttgttaggagacaagcaaacatggttgctcatagcttagctatggcggcatgttcttgggctagtc 34104361  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||||||||||||||||||||||| ||||    
T  34104360 accgtattttttattcttatccttctcgtat 34104330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 335
Target Start/End: Original strand, 3101267 - 3101302
Alignment:
Q  300 tagtcaccgtattttttattcttatccttcttgtat 335  Q
    ||||||||||||||||||||||||||||| ||||||    
T  3101267 tagtcaccgtattttttattcttatccttgttgtat 3101302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 331
Target Start/End: Complemental strand, 15053167 - 15053044
Alignment:
Q  208 ttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtcacc 307  Q
    |||| |||||||| ||| ||  ||||||| |||||||  ||||||   |||||| ||| ||| ||||||| |||| |  | ||||| ||| ||| |||||    
T  15053167 ttatatttacattccaatttcgaggtgaagtttgttagaagacaagcaaacatgattgctcatactttagctagggcagcctgttcctaggttaatcacc 15053068  T
Q  308 gtattttttattcttatccttctt 331  Q
    |||||||| |||||||||||||||    
T  15053067 gtatttttaattcttatccttctt 15053044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 317
Target Start/End: Complemental strand, 259 - 147
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    |||||||  ||||||| ||||||  | ||||| ||||||| |||||||  ||||| ||||| ||| ||||||  ||||||||| ||||||| |  |||||    
T  259 cagttatccttacattccaacttcgatgtgaagtttgttaggagacaagcgaacacggttgctcatactttaactaggacgacttgttcttgggctagtc 160  T
Q  305 accgtatttttta 317  Q
    |||||||||||||    
T  159 accgtatttttta 147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 382 - 512
Alignment:
Q  205 cagttatttttacatttcaactttaaggtgaaatttgttaagagacaaatgaacatggttgttcaaactttagttaggacgacatgttcttagattagtc 304  Q
    ||||||| |||||||| ||||||  || |||| ||||||| |||||||  ||||||||||| ||| |  |||| |||| || | | |  || |  |||||    
T  382 cagttatctttacattccaacttcgagatgaagtttgttaggagacaagcgaacatggttgctcatagcttagctagggcggcctatatttgggctagtc 481  T
Q  305 accgtattttttattcttatccttcttgtat 335  Q
    |||||||||||||||||||| ||||||||||    
T  482 accgtattttttattcttattcttcttgtat 512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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