View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689-Insertion-25 (Length: 770)
Name: NF4689-Insertion-25
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689-Insertion-25 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 382 - 770
Target Start/End: Complemental strand, 6032802 - 6032414
Alignment:
| Q |
382 |
taattttatgttttgaaacagtgaaacaattatcaaataaagaaaaacactagttacctgatgatagattcattcttgatattgcagaaaagttggatct |
481 |
Q |
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| T |
6032802 |
taattttatgttttgaaacagtgaaacaattatcaaataaagaaaaacactagttacctgatgatagattcattcttgatattgcagaaaagttggatct |
6032703 |
T |
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| Q |
482 |
tccagtggcagcatcattgttattattattagcatcccaatttggtgataacattggagagtcatgatcaaaactagcttccttagggatcaaattagtg |
581 |
Q |
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| T |
6032702 |
tccagtggcagcatcattgttattattattagcatcccaatttggtgataacattggagagtcatgatcaaaactagcttccttagggatcaaattagtg |
6032603 |
T |
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| Q |
582 |
ttttgttgataatgatgagaagaagatttcttcaactttctcttaatcacaatagattcctcaatgaagttaaagatatcatctctttgaagtgattttg |
681 |
Q |
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| T |
6032602 |
ttttgttgataatgatgagaagaagatttcttcaactttctcttaatcacaatagattcctcaatgaagttaaagatatcatctctttgaagtgattttg |
6032503 |
T |
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| Q |
682 |
aagtttcatcttcattaggcatcaattgatgaaggatttgttgattttgatcaatttcaggatatttttctttcaaatcttcttgcatc |
770 |
Q |
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| T |
6032502 |
aagtttcatcttcattaggcatcaattgatgaaggatttgttgattttgatcaatttcaggatatttttctttcaaatcttcttgcatc |
6032414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 121 - 319
Target Start/End: Complemental strand, 6033069 - 6032871
Alignment:
| Q |
121 |
tttagtacagaatacagacattgtctaaagggaaaaatagaacagaaaatgaaatgtctccatatgaaaacgattctttgtaaaagcacttttagaataa |
220 |
Q |
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| T |
6033069 |
tttagtacagaatacagacattgtctaaagggaaaaatagaacagaaaatgaaatgtctccatatgaaaacgattctttgtaaaagcacttttagaataa |
6032970 |
T |
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| Q |
221 |
ttcattcttatgatctcagaatatgctgaaaaatatcagctaatatcgatttggactggtattgcaatcctcccatgattttccaaagatttgaagccc |
319 |
Q |
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| T |
6032969 |
ttcattcttatgatctcagaatatgctgaaaaatatcagctaatatcgatttggactggtattgcaatcctcccatgattttccaaagatttgaagccc |
6032871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 6033182 - 6033102
Alignment:
| Q |
8 |
taaatattggctagaaataatacacgcagcatataaatcctttgaagccaaactgtcacatgcccctggcagatctttgag |
88 |
Q |
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| T |
6033182 |
taaatattggctagaaataatacacgcagcatataaatcctttgaagccaaactgtcacatgcccttggcagatctttgag |
6033102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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