View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4689-Insertion-4 (Length: 820)

Name: NF4689-Insertion-4
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4689-Insertion-4
NF4689-Insertion-4
[»] chr7 (10 HSPs)
chr7 (8-422)||(18066134-18066554)
chr7 (99-389)||(18129235-18129525)
chr7 (506-684)||(18065872-18066049)
chr7 (106-268)||(18102745-18102907)
chr7 (8-101)||(18103133-18103226)
chr7 (303-389)||(18101289-18101375)
chr7 (8-101)||(18129750-18129843)
chr7 (727-806)||(18065755-18065832)
chr7 (643-678)||(769034-769069)
chr7 (630-679)||(21928108-21928157)
[»] chr6 (1 HSPs)
chr6 (643-677)||(32149162-32149196)
[»] chr8 (1 HSPs)
chr8 (642-679)||(8148429-8148466)
[»] chr3 (1 HSPs)
chr3 (651-680)||(1456551-1456580)
[»] chr2 (1 HSPs)
chr2 (651-680)||(20897848-20897877)


Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 422
Target Start/End: Complemental strand, 18066554 - 18066134
Alignment:
Q  8 ataacttacgacgaatagagtaatgcaaactgtattttaatgttactattgcaggtatacttctacttccctcgcagaaaccatctcaacgtgagacaag 107  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18066554 ataacttacgacaaatagagtaatgcaaagtgtattttaatgttactattgcaggtatacttctacttccctcgcagaaaccatctcaacgtgagacaag 18066455  T
Q  108 agtaatacagattggagaaggagctaccactaatgcacatgacgctatattgaaatttgtaaattcatcaagctttccgaatcgggcaacatttccacgt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18066454 agtaatacagattggagaaggagctaccactaatgcacatgactctatgttgaaatttgtaaattcatcaagctttccgaatcgggaaacatttccacgt 18066355  T
Q  208 ggctttttgtttggtgctggaacatcagctgctcaggtacatgctaaaaattcgcaggcctttgataagttttgtgattgtagaacgaaggcacaattac 307  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  18066354 ggctttttgtttggtgctggaacatcagctcctcaggtacatgctaaaaattcgcaggcctttgataagttttgagattgtagatcgaaggcacaattac 18066255  T
Q  308 tgataagtttttgtgaccgtagattgaaggtggatctcatgaaggaggaagagggcttggtatatttgacggtaaaatctatctatat------ctattt 401  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||      ||||||    
T  18066254 tgataagtttttgtgaccgtagattgaaggtggatcgcatgaaggaggaagaggacttggtatatttgacggtataatctatctatatctatatctattt 18066155  T
Q  402 atataaaaagggggtacatag 422  Q
    ||||||||||||| |||||||    
T  18066154 atataaaaaggggatacatag 18066134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 99 - 389
Target Start/End: Complemental strand, 18129525 - 18129235
Alignment:
Q  99 tgagacaagagtaatacagattggagaaggagctaccactaatgcacatgacgctatattgaaatttgtaaattcatcaagctttccgaatcgggcaaca 198  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||    
T  18129525 tgagacaagagtaatatagatcggagaaggagctaccactaatgcacatgactctatattgaaatttgtaaactcatcaagctttccaaatcgggaaaca 18129426  T
Q  199 tttccacgtggctttttgtttggtgctggaacatcagctgctcaggtacatgctaaaaattcgcaggcctttgataagttttgtgattgtagaacgaagg 298  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18129425 tttccacgtggctttttttttggtgctggaacatcagctcctcaggtacatgctaaaaattcgcaggcctttgataagttttgagattgtagaacgaagg 18129326  T
Q  299 cacaattactgataagtttttgtgaccgtagattgaaggtggatctcatgaaggaggaagagggcttggtatatttgacggtaaaatctat 389  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  18129325 cacaattactgataagtttttgtgactttagattgaaggtggatctcatgaaggaggaagagggcttggtatattagacggtataatctat 18129235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 506 - 684
Target Start/End: Complemental strand, 18066049 - 18065872
Alignment:
Q  506 tagttaaatctaattgaaactggaacaatcataattgatcactgtaaaaggaatttattatattatgtaatggaaaaacggatagacatacaattagtgt 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  18066049 tagttaaatctaattgaaactggaacaatcataattgatcactgtaaaaggaatttattatattatgtaatagaaaaacggatagacatataattagtgt 18065950  T
Q  606 atatctttctaccannnnnnnnnngtggtggtcaaagttcgaatatcagaccttgcatatattatacattgtcccatat 684  Q
    ||||||||||||||           |||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||    
T  18065949 atatctttctaccatttttttata-tggtggtcaaggttcgaatctcaaaccttgcatatattatacattatcccatat 18065872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 106 - 268
Target Start/End: Complemental strand, 18102907 - 18102745
Alignment:
Q  106 agagtaatacagattggagaaggagctaccactaatgcacatgacgctatattgaaatttgtaaattcatcaagctttccgaatcgggcaacatttccac 205  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||| | ||||||||| |||| | |||||||||    
T  18102907 agagtaatacagattggagaaggagatacgactaatgcacatgactctatattgaaatttgtaaattcatcgaactttccgaaccgggtatcatttccac 18102808  T
Q  206 gtggctttttgtttggtgctggaacatcagctgctcaggtacatgctaaaaattcgcaggcct 268  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||| |||||| ||| ||||||    
T  18102807 gtggctttttgtttggtgctggaacttcagccgctcaggtacatgttaaaaagtcgtaggcct 18102745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 18103226 - 18103133
Alignment:
Q  8 ataacttacgacgaatagagtaatgcaaactgtattttaatgttactattgcaggtatacttctacttccctcgcagaaaccatctcaacgtga 101  Q
    |||||||||||||||| |||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||| ||||| |||||||||||||    
T  18103226 ataacttacgacgaatcgagtaatgcaaagtgtattttaatgttaatattgcaggcatacttctacttccctcggagaaatcatctcaacgtga 18103133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 303 - 389
Target Start/End: Complemental strand, 18101375 - 18101289
Alignment:
Q  303 attactgataagtttttgtgaccgtagattgaaggtggatctcatgaaggaggaagagggcttggtatatttgacggtaaaatctat 389  Q
    |||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||    
T  18101375 attattgacaagtttttgtgaccttagattgaaggtggatctcatgaaggaggaagagggcttggcatatttgatggtataatctat 18101289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 18129843 - 18129750
Alignment:
Q  8 ataacttacgacgaatagagtaatgcaaactgtattttaatgttactattgcaggtatacttctacttccctcgcagaaaccatctcaacgtga 101  Q
    |||||||||||| |||||||||||| ||| |||||| |||||||| ||||||||| |||||||||||||||||| |||||| ||||||||||||    
T  18129843 ataacttacgacaaatagagtaatggaaagtgtattataatgttaatattgcaggaatacttctacttccctcggagaaacaatctcaacgtga 18129750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 727 - 806
Target Start/End: Complemental strand, 18065832 - 18065755
Alignment:
Q  727 tatgtgagaatggtatgaattaaattacaaccttcagattaaaagatgatttattgaagtcatatgccaattttcacttc 806  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  18065832 tatgtgagaatggtaggaat-aaattacaaccttcagattaaaagatgttttattg-agtcatgtgccaattttcacttc 18065755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 678
Target Start/End: Original strand, 769034 - 769069
Alignment:
Q  643 ttcgaatatcagaccttgcatatattatacattgtc 678  Q
    ||||||||||||| ||||||||||||||||||||||    
T  769034 ttcgaatatcagatcttgcatatattatacattgtc 769069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 679
Target Start/End: Original strand, 21928108 - 21928157
Alignment:
Q  630 gtggtggtcaaagttcgaatatcagaccttgcatatattatacattgtcc 679  Q
    ||||||||||| ||| |||| |||||||||||||| ||||| ||||||||    
T  21928108 gtggtggtcaaggtttgaatctcagaccttgcataaattatgcattgtcc 21928157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 643 - 677
Target Start/End: Complemental strand, 32149196 - 32149162
Alignment:
Q  643 ttcgaatatcagaccttgcatatattatacattgt 677  Q
    |||||||||||||||||||||||||||| ||||||    
T  32149196 ttcgaatatcagaccttgcatatattatgcattgt 32149162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 679
Target Start/End: Original strand, 8148429 - 8148466
Alignment:
Q  642 gttcgaatatcagaccttgcatatattatacattgtcc 679  Q
    |||||||| | |||||||||||||||||||||||||||    
T  8148429 gttcgaatcttagaccttgcatatattatacattgtcc 8148466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 651 - 680
Target Start/End: Original strand, 1456551 - 1456580
Alignment:
Q  651 tcagaccttgcatatattatacattgtccc 680  Q
    ||||||||||||||||||||||||||||||    
T  1456551 tcagaccttgcatatattatacattgtccc 1456580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 651 - 680
Target Start/End: Complemental strand, 20897877 - 20897848
Alignment:
Q  651 tcagaccttgcatatattatacattgtccc 680  Q
    ||||||||||||||||||||||||||||||    
T  20897877 tcagaccttgcatatattatacattgtccc 20897848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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