View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689-Insertion-6 (Length: 524)
Name: NF4689-Insertion-6
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689-Insertion-6 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 9 - 521
Target Start/End: Complemental strand, 1762239 - 1761718
Alignment:
| Q |
9 |
ctaaagcctggaattccagcaaaaattttgcaaatgatgttttgaagttctctaagctttgaaaaaatttctcttccttcaacataattgctcccaaaac |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1762239 |
ctaaagcctggaattccagcaaaaattttgcaaatgatgttttgaagttctctaagctttgaaaaaatttctcttccttcaacataattgctcccaaaac |
1762140 |
T |
|
| Q |
109 |
aagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaactttaatctctgaaactccatctttttccaatttcgtctcccatgatcttag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1762139 |
aagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaactttaatctctgaaactccatctttttccaatttcgtctcccatgatcttag |
1762040 |
T |
|
| Q |
209 |
cattatattcgtggagtcgactatcataccgacctttgtcttcaacgtgattnnnnnnnnnnnncattgttattcaaaatcaacatttacaagcaattgt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1762039 |
cattatattcgtggagtcgactatcataccgacctttgtcttcaacgtgatt-aaaataaaaaacattgttattcaaaatcaacatttacaagcaattgt |
1761941 |
T |
|
| Q |
309 |
atgtaaaaacaacatctttactattgcatatacatgcctatcattgtaaaatagtttccaatgtcaaaaatactccaacatattaac---------nnnn |
399 |
Q |
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| T |
1761940 |
atgtaaaaacaacatctttactattgcatatacatgcctatcattgtaaaatagtttccaatgtcaaaaatactccaacatattaactcttttttttttt |
1761841 |
T |
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| Q |
400 |
nnnnnnatttaaatatgcttttaagtccttacaaatatgctattttgtgcttttaattagtccttaaaaatatatttctagtccttgcgtgt-atatcac |
498 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1761840 |
ttatttatttaaatgtgcttttaagtccttacaaatatgctattttatgcttttaattagtccttaaaaatatatttctagtccttgcgtgtaatatcac |
1761741 |
T |
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| Q |
499 |
tttttgctttaagttgatccttg |
521 |
Q |
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|||||||||||||||| |||||| |
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| T |
1761740 |
tttttgctttaagttggtccttg |
1761718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 57 - 232
Target Start/End: Complemental strand, 25196765 - 25196587
Alignment:
| Q |
57 |
tctctaagctttgaaaaaatttctcttccttcaacataattgctcccaaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaa |
156 |
Q |
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||||||||||||| || |||||| |||||||||||||||||||||||||||| |||| |||||||||||| | || ||| ||| ||| |||| |||| |
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| T |
25196765 |
tctctaagctttgcgaatatttcttttccttcaacataattgctcccaaaacacactctagcaattatgtcagccgacaagcttcgcaaatcttcatcaa |
25196666 |
T |
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| Q |
157 |
ctttaatctctgaa---actccatctttttccaatttcgtctcccatgatcttagcattatattcgtggagtcgactat |
232 |
Q |
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| T |
25196665 |
ctgtaatctctgaaatcaccccatctccttctattttagtctcccaagatcttaccattatatttgtggagtcaactat |
25196587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 173
Target Start/End: Complemental strand, 19207204 - 19207088
Alignment:
| Q |
57 |
tctctaagctttgaaaaaatttctcttccttcaacataattgctcccaaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaa |
156 |
Q |
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||||||||||||| || |||||| ||||||| ||||||||||||||||||| | |||| |||||||||||| |||| ||| ||| || |||| |||| |
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| T |
19207204 |
tctctaagctttgtgaatatttcttttccttcgacataattgctcccaaaactaactctagcaattatgtcagctgacaagcttcgcagatcttcatcaa |
19207105 |
T |
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| Q |
157 |
ctttaatctctgaaact |
173 |
Q |
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| T |
19207104 |
ctttaatctctgaaact |
19207088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 232
Target Start/End: Complemental strand, 9527 - 9352
Alignment:
| Q |
60 |
ctaagctttgaaaaaatttctcttccttcaacataattgctcccaaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaactt |
159 |
Q |
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|||||||||| || |||||| |||||| ||||||||||||||||||||| |||| |||||||||||| |||| ||| ||| || |||| ||||| || |
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| T |
9527 |
ctaagctttgtgaatatttcttttcctttgacataattgctcccaaaacaaactctagcaattatgtcagctgacaagcttcgcagatcttcgtcaattt |
9428 |
T |
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| Q |
160 |
taatctctgaa---actccatctttttccaatttcgtctcccatgatcttagcattatattcgtggagtcgactat |
232 |
Q |
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| T |
9427 |
ttatctctgaaactactccatcactttcaattctactctcccaagatcttagcattatatctgtggagtcaactat |
9352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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