View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4689-Insertion-8 (Length: 477)
Name: NF4689-Insertion-8
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689-Insertion-8 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 8 - 477
Target Start/End: Complemental strand, 38062471 - 38062002
Alignment:
| Q |
8 |
cctttcttgtattcaagagtaacttgaaggcaattggaaacatgcaactaatagatacgaaacatgcaactaatagatatgaaacttgcaacaacagaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38062471 |
cctttcttgtattcaagagtaacttgaaggcatttggaagcatgcaactaatagatacgaaacatgcaactaatagatatgaaacttgcaacaacagaaa |
38062372 |
T |
|
| Q |
108 |
attagtcttagagaataaacagccataagtttgtgtcaaggtattcaacatgaactacatctctacatcaaaatgattagacaaacttgatcaatatgca |
207 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38062371 |
attagtcttagagaatagacagccataagtttgtgtcaaggtattcaacatgaactacatctctacatcaaaatgattatacaaacttgatcaatatgca |
38062272 |
T |
|
| Q |
208 |
tgaatgccaaacaatggagttcgtttaaacagttggcaacctgcttctgaacaagaagtttttattgtattatcattttaaacattgagcaggctttact |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38062271 |
tgaatgccaaacaatggagttcgtttaaatagttggtaacctgcttctgaacaagaaggttttattgtattatcattttaaacattgggcaggctttact |
38062172 |
T |
|
| Q |
308 |
caccataactactaaacaaaacctcagagaagcaaactgtagatgtaccaaacaacaagctgagactgtgaaaataacaacaaacttacacttataagac |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38062171 |
caccataactactaaacaaaacctcagagaagcaaactatagatgtaccaaacaacaagctgagactgtgaaaataacaacaaacttacacttataagac |
38062072 |
T |
|
| Q |
408 |
cataaagaattctccgctttgatgttgcagtggctgatacagcataaagtttgatcccttcagcaagctt |
477 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38062071 |
cataaagaattctccgctttgatgttgaagtggctgatacagcataaagtttgatcccttcagcaagctt |
38062002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 477
Target Start/End: Original strand, 45592462 - 45592538
Alignment:
| Q |
401 |
ataagaccataaagaattctccgctttgatgttgcagtggctgatacagcataaagtttgatcccttcagcaagctt |
477 |
Q |
| |
|
|||||| || ||||||| | |||||||| || | |||||| |||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
45592462 |
ataagatcagaaagaatggttcgctttgaagtggaagtggccgatatagcatatagttttatcccttcagcaagctt |
45592538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University