View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4689-Insertion-9 (Length: 470)
Name: NF4689-Insertion-9
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689-Insertion-9 |
 | |
|
| [»] scaffold0007 (2 HSPs) |
| | |
|
| [»] scaffold0499 (1 HSPs) |
| | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
| [»] scaffold0048 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 7 - 425
Target Start/End: Complemental strand, 18984539 - 18984122
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18984539 |
ataaaggcccaataatctaagcccaatattttattatttaacatctaccctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
18984440 |
T |
|
| Q |
107 |
tacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaacccgaaccaatgaag |
206 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18984439 |
tacgaaaaa-atactaagtaatataaaattctaacaccacccctcaagctaaagcttactaaggtttaagcttgttacaaattaacccgaaccaatgaag |
18984341 |
T |
|
| Q |
207 |
agcagcaaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaagaaccggtagag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18984340 |
agcagcaaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaagaaccggtagag |
18984241 |
T |
|
| Q |
307 |
ataattagccatacataagaaccagtagagagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgcaatcactcagaagaatcaaaaga |
406 |
Q |
| |
|
|||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18984240 |
ataactagccatacacaagaaccaatagagagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgcaatcaatcagaagaatcaaaaga |
18984141 |
T |
|
| Q |
407 |
accagtagaggtaacgccc |
425 |
Q |
| |
|
|||||||||| ||| |||| |
|
|
| T |
18984140 |
accagtagagataatgccc |
18984122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 40 - 193
Target Start/End: Complemental strand, 21862574 - 21862421
Alignment:
| Q |
40 |
ttatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaagtaatataaaattcta |
139 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
21862574 |
ttatctaacatctagcctcagactcacaatgagtcaacaagaagcattgtgagtttgtcaagcaaaatacgaaaaacatactaaataatataaagttcta |
21862475 |
T |
|
| Q |
140 |
acaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaacc |
193 |
Q |
| |
|
|||| |||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
21862474 |
acacttcccctcaagctgaagcatactaaactttaagcttgttacaaattaacc |
21862421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 9290732 - 9290895
Alignment:
| Q |
30 |
caatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaagtaata |
129 |
Q |
| |
|
||||| |||||||| ||||||||| ||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
9290732 |
caatactttattatctaacatctaccctcaaactcacaatgagtcaacaagaagcattgtgagtttgtttgacaaaatacgaaaagcatactaaataata |
9290831 |
T |
|
| Q |
130 |
taaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaacc |
193 |
Q |
| |
|
|||| |||||||| || ||| ||||||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
9290832 |
taaagttctaacattactcctgaagctgaagtttaccaagctttaagcttgttacaaattaacc |
9290895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 7 - 167
Target Start/End: Complemental strand, 10741814 - 10741661
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
106 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||| || |||||||||||||||| |
|
|
| T |
10741814 |
ataaagacccaataacttaagcccaatattttattatctaacatctaccctcaaactcacaatgagtcaacaagaagcattgtaagtttgtcaaacaaaa |
10741715 |
T |
|
| Q |
107 |
tacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttacta |
167 |
Q |
| |
|
||||||||||| ||||||||| ||||||| | |||||||||||||||||| |||| |
|
|
| T |
10741714 |
tacgaaaaaca-------taatataaagttctaacgctacccctcaagctgaagctcacta |
10741661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 33424046 - 33424233
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaa---gcatcgtgagtttgtcaaaca |
103 |
Q |
| |
|
|||||| | |||||| ||||| ||||| |||||||| |||| || | ||||||||||||||||||||||| |||| |||| || ||| |||| || |
|
|
| T |
33424046 |
ataaagacgcaataacttaagctcaatactttattatctaacgtcaaccctcaaactcacaatgagtcaacaagaataagcattacgaatttttcaatca |
33424145 |
T |
|
| Q |
104 |
aaatacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaa |
191 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||| |||||||||| |||||||||||||| |||||| |||||||||||||| |
|
|
| T |
33424146 |
aaatacgaaaaacatactaaataatataaagttctaacactacccctcaagttgaagcttactaagctttaagtttgttacaaattaa |
33424233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 26 - 194
Target Start/End: Original strand, 28063086 - 28063255
Alignment:
| Q |
26 |
agcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaa-aaacatactaag |
124 |
Q |
| |
|
||||| ||| |||||||||||||| |||| ||||||||| ||| ||| |||||||| |||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
28063086 |
agcccgatactttattatttaacacctattgtcaaactcatgatgcatcacaaagaagcattgtgattttgttaaacaaaatacgaagaaacatactaaa |
28063185 |
T |
|
| Q |
125 |
taatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaaccc |
194 |
Q |
| |
|
||||||||| ||||||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
28063186 |
taatataaagttctaacacttcccctcaagatgaagtttactaagctttaagcttgttacaaattaaccc |
28063255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 347
Target Start/End: Complemental strand, 18981506 - 18981402
Alignment:
| Q |
243 |
cagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaagaaccggtagagataattagccatacataagaaccagtagagagaagt |
342 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||| ||||||||||||||||||| | | ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
18981506 |
cagcaagaaccactgcaaccaaccagtcaaatagagacccatccaaacaaaagaaccaacacaaatacctagccatacataagaaccaacagagagaagt |
18981407 |
T |
|
| Q |
343 |
gcaat |
347 |
Q |
| |
|
||||| |
|
|
| T |
18981406 |
gcaat |
18981402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 2131690 - 2131804
Alignment:
| Q |
79 |
agaagcatcgtgagtttgtcaaacaaaatacgaaaaacatacta-agtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagc |
177 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||| | | ||||||||| | |||| | |||| ||||| |||||||||||||| ||||||| |
|
|
| T |
2131690 |
agaagcattatgagtttgtcaaacaaaatatgaaaaacattgcacaataatataaactcctaatattacccttcaagttgaagcttactaagctttaagc |
2131789 |
T |
|
| Q |
178 |
ttgttacaaattaac |
192 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2131790 |
ttgttacaaattaac |
2131804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 13098180 - 13098097
Alignment:
| Q |
111 |
aaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaaccc |
194 |
Q |
| |
|
||||||||||||| |||||| ||||||||| |||||| ||||| | ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13098180 |
aaaaacatactaaaatgtataaacttctaacactaccccttaagctaaggcttactaaggtttaagctcgttacaaattaaccc |
13098097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 337
Target Start/End: Original strand, 9290947 - 9291072
Alignment:
| Q |
212 |
caaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaagaaccggtagagataat |
311 |
Q |
| |
|
||||||||||||| || |||||||||||| || ||||||||| | || |||||| ||||| ||||||| ||||||| || |||||| ||| ||| || |
|
|
| T |
9290947 |
caaccaaagtgagttatgttcgtagagagatcaacaagaaccatcatcatcaaccaatcaaagagagaacaatccaaataatagaaccagtatagagaag |
9291046 |
T |
|
| Q |
312 |
tagccatacataagaaccagtagaga |
337 |
Q |
| |
|
| |||||||||| ||||| |||||| |
|
|
| T |
9291047 |
caaccatacataacaaccaatagaga |
9291072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 404
Target Start/End: Complemental strand, 22860917 - 22860848
Alignment:
| Q |
336 |
gagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgcaat-cactcagaagaatcaaaa |
404 |
Q |
| |
|
|||||||||||||| |||||||| || |||| ||| ||||||||||||||| | ||||||||||||||| |
|
|
| T |
22860917 |
gagaagtgcaatgcaatcaatcaaaagaatcaatagggggagaagtgcaatggaatcagaagaatcaaaa |
22860848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 5986885 - 5986937
Alignment:
| Q |
79 |
agaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaagtaatata |
131 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| |||||| ||| ||||||| |
|
|
| T |
5986885 |
agaagcattgtgagtttgtgaaacaaaatacgaacaacatattaaataatata |
5986937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 8701773 - 8701721
Alignment:
| Q |
79 |
agaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaagtaatata |
131 |
Q |
| |
|
|||||||| ||||||||||||||||||| || || |||||||||| ||||||| |
|
|
| T |
8701773 |
agaagcattgtgagtttgtcaaacaaaacacaaacaacatactaaataatata |
8701721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 13109509 - 13109445
Alignment:
| Q |
111 |
aaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaa |
175 |
Q |
| |
|
||||||||||||| ||||||||| |||||| || |||| | ||||| |||||||||||| ||||| |
|
|
| T |
13109509 |
aaaaacatactaaataatataaatttctaatacaacccattaagctaaagcttactaagttttaa |
13109445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 195 - 425
Target Start/End: Original strand, 14539 - 14769
Alignment:
| Q |
195 |
gaaccaatgaagagcagcaaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaa |
294 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14539 |
gaaccaataaagagcagcaaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaa |
14638 |
T |
|
| Q |
295 |
gaaccggtagagataattagccatacataagaaccagtagagagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgcaatcactcaga |
394 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14639 |
gaaccggtagagataactagccatacataagaaccaatagagagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgcaatcaatcaga |
14738 |
T |
|
| Q |
395 |
agaatcaaaagaaccagtagaggtaacgccc |
425 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |
|
|
| T |
14739 |
agaatcaaaagaaccagtagagataacgccc |
14769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 14322 - 14504
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
106 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| || | |||||||||||||| |
|
|
| T |
14322 |
ataaaggccccataatttaagcccaatattttattatttaacatctaccctcaaactcacaatgagtcaacgggaagcattgtaattttgtcaaacaaaa |
14421 |
T |
|
| Q |
107 |
tacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaatt |
189 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14422 |
tacgaaaaacatactaattaatataaaattctaacaccacctctcaagctgaagcttactaagctttaagcttgttacaaatt |
14504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 9e-71; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 195 - 405
Target Start/End: Complemental strand, 20242552 - 20242339
Alignment:
| Q |
195 |
gaaccaatgaagagcagcaaccaaagtgagctaccttcgtagagagagcagca---agaaccactaccaccaaccagtcaaatagagaaccatccaaaca |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20242552 |
gaaccaatgaagagcagcaaccaaagtgagttatctttgtagagagagcagcagcaagaaccactaccaccaaacagtcaaatagagaaccatccaaaca |
20242453 |
T |
|
| Q |
292 |
aaagaaccggtagagataattagccatacataagaaccagtagagagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgcaatcactc |
391 |
Q |
| |
|
|||||| | ||||||||| |||||| |||||| ||||| ||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
20242452 |
aaagaatcaatagagataactagccacacataaaaaccaatagagagaagtgcaatgctctcaatcagaagaatccataaggggataagtgcaatcaatc |
20242353 |
T |
|
| Q |
392 |
agaagaatcaaaag |
405 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
20242352 |
aaaagaatcaaaag |
20242339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 195 - 405
Target Start/End: Original strand, 20250608 - 20250821
Alignment:
| Q |
195 |
gaaccaatgaagagcagcaaccaaagtgagctaccttcgtagagagagca---gcaagaaccactaccaccaaccagtcaaatagagaaccatccaaaca |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20250608 |
gaaccaatgaagagcagcaaccaaagtgagttatctttgtagagagagcagcagcaagaaccactaccaccaaacagtcaaatagagaaccatccaaaca |
20250707 |
T |
|
| Q |
292 |
aaagaaccggtagagataattagccatacataagaaccagtagagagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgcaatcactc |
391 |
Q |
| |
|
|||||| | ||||||||| |||||| |||||| ||||| ||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
20250708 |
aaagaatcaatagagataactagccacacataaaaaccaatagagagaagtgcaatgctctcaatcagaagaatccataaggggataagtgcaatcaatc |
20250807 |
T |
|
| Q |
392 |
agaagaatcaaaag |
405 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
20250808 |
aaaagaatcaaaag |
20250821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 7 - 191
Target Start/End: Complemental strand, 20242769 - 20242585
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
106 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20242769 |
ataaaggtccaataacttaaatccaatattttattatttaacatctaccctcaaactcacaatgagtcaacgagaagcattgtgagtttgtcaaacaaaa |
20242670 |
T |
|
| Q |
107 |
tacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaa |
191 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| |||||||||||||||| ||| |||||||||| ||||||| | ||||||||||| |
|
|
| T |
20242669 |
tacgaaaaatatactaagtaatataaagttcaaacaccacccctcaagttgaggcttactaagctttaagcctattacaaattaa |
20242585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 20250391 - 20250575
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
106 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20250391 |
ataaaggtccaataacttaaatccaatattttattatttaacatctaccctcaaactcacaatgagtcaacgagaagcattgtgagtttgtcaaacaaaa |
20250490 |
T |
|
| Q |
107 |
tacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaa |
191 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| |||||||||||||||| ||| |||||||||| ||||||| | ||||||||||| |
|
|
| T |
20250491 |
tacgaaaaatatactaagtaatataaagttcaaacaccacccctcaagttgaggcttactaagctttaagcctattacaaattaa |
20250575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 142
Target Start/End: Complemental strand, 43615477 - 43615365
Alignment:
| Q |
30 |
caatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaagtaata |
129 |
Q |
| |
|
|||||||||||||| |||||| |||| ||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43615477 |
caatattttattatctaacatatatcttcaaactcacaatgaatcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatactaaataata |
43615378 |
T |
|
| Q |
130 |
taaaattctaaca |
142 |
Q |
| |
|
|||| ||| |||| |
|
|
| T |
43615377 |
taaagttcaaaca |
43615365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 5616899 - 5616784
Alignment:
| Q |
79 |
agaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagct |
178 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||| ||| ||| ||||||||| ||||||||| |||||| ||||| |||| ||||||| ||||| || |
|
|
| T |
5616899 |
agaagcattgtgagtttgtcaaacaaaatatgaaaaagatattaaataatataaagttctaacactacccctaaagctaaagcctactaagctttaaact |
5616800 |
T |
|
| Q |
179 |
tgttacaaattaaccc |
194 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5616799 |
tgttacaaattaaccc |
5616784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 16578933 - 16579038
Alignment:
| Q |
89 |
tgagtttgtcaaacaaaatacgaaaaacatactaagtaatataaaattctaacac--cacccctcaagctgaagcttactaaggtttaagcttgttacaa |
186 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| |||||| |||||| ||||| |||||||||| | ||||||| |||| ||||| |||||||||| |
|
|
| T |
16578933 |
tgagtttgtcaaacaaattacgaaaaacatcctaaataatat-aaattccaacactatacccctcaagttaaagcttaataagctttaaacttgttacaa |
16579031 |
T |
|
| Q |
187 |
attaacc |
193 |
Q |
| |
|
||||||| |
|
|
| T |
16579032 |
attaacc |
16579038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 16583691 - 16583778
Alignment:
| Q |
107 |
tacgaaaaacatactaagtaatataaaattcta-acaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaacc |
193 |
Q |
| |
|
|||||||||||| |||| ||||||||| | ||| || |||||||||||| |||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
16583691 |
tacgaaaaacatcctaaataatataaattcctacactatacccctcaagctaaagcttactaagctttaaatttgatacaaattaacc |
16583778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 32041698 - 32041644
Alignment:
| Q |
285 |
ccaaacaaaagaaccggtagagataattagccatacataagaaccagtagagaga |
339 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||||||| |||||| | |||||||| |
|
|
| T |
32041698 |
ccaaacaaaagaaccggtagagagaatcaaccatacaaaagaacaaatagagaga |
32041644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 20241056 - 20241027
Alignment:
| Q |
18 |
ataatctaagcccaatattttattatttaa |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
20241056 |
ataatctaagcccaatattttattatttaa |
20241027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 20252011 - 20252040
Alignment:
| Q |
18 |
ataatctaagcccaatattttattatttaa |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
20252011 |
ataatctaagcccaatattttattatttaa |
20252040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 9e-71; HSPs: 19)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 195 - 405
Target Start/End: Complemental strand, 44338875 - 44338662
Alignment:
| Q |
195 |
gaaccaatgaagagcagcaaccaaagtgagctaccttcgtagagagagcagca---agaaccactaccaccaaccagtcaaatagagaaccatccaaaca |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44338875 |
gaaccaatgaagagcagcaaccaaagtgagttatctttgtagagagagcagcagcaagaaccactaccaccaaacagtcaaatagagaaccatccaaaca |
44338776 |
T |
|
| Q |
292 |
aaagaaccggtagagataattagccatacataagaaccagtagagagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgcaatcactc |
391 |
Q |
| |
|
|||||| | ||||||||| |||||| |||||| ||||| ||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
44338775 |
aaagaatcaatagagataactagccacacataaaaaccaatagagagaagtgcaatgctctcaatcagaagaatccataaggggataagtgcaatcaatc |
44338676 |
T |
|
| Q |
392 |
agaagaatcaaaag |
405 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
44338675 |
aaaagaatcaaaag |
44338662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 7 - 191
Target Start/End: Complemental strand, 44339092 - 44338908
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
106 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44339092 |
ataaaggtccaataacttaaatccaatattttattatttaacatctaccctcaaactcacaatgagtcaacgagaagcattgtgagtttgtcaaacaaaa |
44338993 |
T |
|
| Q |
107 |
tacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaa |
191 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| |||||||||||||||| ||| |||||||||| ||||||| | ||||||||||| |
|
|
| T |
44338992 |
tacgaaaaatatactaagtaatataaagttcaaacaccacccctcaagttgaggcttactaagctttaagcctattacaaattaa |
44338908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 7 - 193
Target Start/End: Original strand, 46963133 - 46963319
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
106 |
Q |
| |
|
||||| ||||||||| |||||| |||| |||||||| ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||| | |
|
|
| T |
46963133 |
ataaatgcccaataacttaagcctaatactttattatctaacatctaccctcaaactcacaatgagtcaacaagaagcattctgagtttgtcagacaata |
46963232 |
T |
|
| Q |
107 |
tacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaacc |
193 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
46963233 |
tacgaaaaacatactaaataatataaagttctaacactacccctcaagctgaagcttactaagctttaaacttgttacaaattaacc |
46963319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 7 - 194
Target Start/End: Original strand, 15614319 - 15614506
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
106 |
Q |
| |
|
||||||| ||||||| ||||||||||| |||||||| ||||||||| ||||||||||| ||||||||||| |||| || ||||||||||||||||||| |
|
|
| T |
15614319 |
ataaaggtccaataacttaagcccaatactttattatctaacatctaccctcaaactcaaaatgagtcaacaagaat-attgtgagtttgtcaaacaaaa |
15614417 |
T |
|
| Q |
107 |
tacgaaaa-acatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaaccc |
194 |
Q |
| |
|
|| ||||| ||||||||| ||||||||| |||| |||| ||||||| ||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
15614418 |
tatgaaaaaacatactaaataatataaagttcttacactacccctcgagctgaagcttactaagttttaagcttgttaaaaattaaccc |
15614506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 31 - 194
Target Start/End: Original strand, 17921292 - 17921455
Alignment:
| Q |
31 |
aatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaagtaatat |
130 |
Q |
| |
|
|||| |||||||| ||| | ||| ||| ||||||| ||| ||||| |||| || |||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
17921292 |
aatactttattatctaatacctacccttaaactcatgatgcatcaaccagaaacaatgtgagtttgtcaaacaaaatacgaaaaacatactaaataattt |
17921391 |
T |
|
| Q |
131 |
aaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaaccc |
194 |
Q |
| |
|
|||||| |||| |||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17921392 |
aaaatttgaacagtacccctcaagctaaagcttactaagctttaagcttgttacaaattaaccc |
17921455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 48643663 - 48643528
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
106 |
Q |
| |
|
|||||||||||| || ||| || |||||||||| || ||||||||| ||||||||||||||||||||||| | || ||| |||||||||||||| |||| |
|
|
| T |
48643663 |
ataaaggcccaaaaacttaaacctaatattttatcatctaacatctaccctcaaactcacaatgagtcaacaataaacattgtgagtttgtcaaataaaa |
48643564 |
T |
|
| Q |
107 |
tacgaaaaacatactaagtaatataaaattctaaca |
142 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
48643563 |
tacgaaaaacatactaaataatataaagttctaaca |
48643528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 96 - 299
Target Start/End: Complemental strand, 26403455 - 26403261
Alignment:
| Q |
96 |
gtcaaacaaaatacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaacccg |
195 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| ||| |||||||| ||||||| |||| | | |
|
|
| T |
26403455 |
gtcaaacaaaatacgaaaaacatactaaataatataaagttctaacactacccctcaagctaaagtttactaagctttaagc-cgttagta--------g |
26403365 |
T |
|
| Q |
196 |
aaccaatgaagagcagcaaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaag |
295 |
Q |
| |
|
|||||||| |||| |||||||||| || || | |||||||||||| |||||||| || ||||| |||||||| ||||||||||||||| ||||| ||| |
|
|
| T |
26403364 |
aaccaatggttagcaacaaccaaagttagttatcatcgtagagagagtagcaagaatcattaccatcaaccagttaaatagagaaccatctaaacagaag |
26403265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 21814452 - 21814279
Alignment:
| Q |
24 |
taagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaa |
123 |
Q |
| |
|
||||| ||||| |||||||| |||| ||| ||||||||||| ||| |||| |||||||| |||||||||||||||| |||| |||||||||||||| |
|
|
| T |
21814452 |
taagctcaatactttattatctaacgcctaccctcaaactcatgatgcaacaacaagaagcattgtgagtttgtcaaacagaatatgaaaaacatactaa |
21814353 |
T |
|
| Q |
124 |
gtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaacccgaa |
197 |
Q |
| |
|
||||||||| ||||||||| |||||||||| ||| ||||| ||| |||| | |||||||| |||| |||||| |
|
|
| T |
21814352 |
ataatataaagttctaacactacccctcaagttgagtcttaccaagctttatgtttgttacatattatcccgaa |
21814279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 336
Target Start/End: Original strand, 46963394 - 46963495
Alignment:
| Q |
237 |
agagagcagcaagaaccactaccaccaaccagtcaaatagag--aaccatccaaacaaaagaaccggtagagataattagccatacataagaaccagtag |
334 |
Q |
| |
|
|||||||||||||||||| |||| |||||| ||||| |||| |||||||||||||| |||||| ||||||| || |||||||||||||||||| ||| |
|
|
| T |
46963394 |
agagagcagcaagaaccatcaccatcaaccaatcaaagagagagaaccatccaaacaatagaaccagtagagagaagcagccatacataagaaccaatag |
46963493 |
T |
|
| Q |
335 |
ag |
336 |
Q |
| |
|
|| |
|
|
| T |
46963494 |
ag |
46963495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 24486650 - 24486728
Alignment:
| Q |
112 |
aaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaatta |
190 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| |||| | ||| | |||||||||||| |||||| ||||||||||||| |
|
|
| T |
24486650 |
aaaacatactaaataatataaacttctaacactacccttgaagttaaagcttactaagctttaagtttgttacaaatta |
24486728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 406
Target Start/End: Complemental strand, 26403247 - 26403126
Alignment:
| Q |
285 |
ccaaacaaaagaaccggtagagataattagccatacataagaaccagtagagagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgca |
384 |
Q |
| |
|
||||||||||||| ||| |||| || ||||||||| ||||| || ||| |||||||||||||| |||||||| || |||| | | |||||||||||| |
|
|
| T |
26403247 |
ccaaacaaaagaattggtggagagaagcagccatacaaaagaatcaatagggagaagtgcaatgcaatcaatcaaaagaatcaaaagggggagaagtgct |
26403148 |
T |
|
| Q |
385 |
atcactcagaagaatcaaaaga |
406 |
Q |
| |
|
|| | |||||| |||||||||| |
|
|
| T |
26403147 |
ataaatcagaataatcaaaaga |
26403126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 193
Target Start/End: Complemental strand, 3902231 - 3902098
Alignment:
| Q |
59 |
aaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctga |
158 |
Q |
| |
|
||||||| |||| ||||| |||| || |||||||||| ||| |||||| |||| |||| ||| ||||||||| ||||||||| ||| | ||||| | |
|
|
| T |
3902231 |
aaactcatgatgaatcaacaagaaatattgtgagtttgtaaaaaaaaataa-aaaatcatattaaataatataaagttctaacacttccctttaagctaa |
3902133 |
T |
|
| Q |
159 |
agcttactaaggtttaagcttgttacaaattaacc |
193 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
3902132 |
agcttgctaagctttaaacttgttacaaattaacc |
3902098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 406
Target Start/End: Original strand, 46963667 - 46963738
Alignment:
| Q |
336 |
gagaagtgcaatgctat-caatcagaaaaatccataaggggagaagtgcaatcactcagaagaatcaaaaga |
406 |
Q |
| |
|
|||||||||||||| || ||||||||| || | ||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
46963667 |
gagaagtgcaatgcaatgcaatcagaagaaccaatagggggagaaatgcaatcaatcagaagaatcaaaaga |
46963738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 11827994 - 11828174
Alignment:
| Q |
26 |
agcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaa---------c |
116 |
Q |
| |
|
|||||| || |||||||| ||||| ||| ||| ||||||| ||| ||||| |||||||| |||||||||| || |||||||| ||||| | |
|
|
| T |
11827994 |
agcccattactttattatctaacacctaccctaaaactcatgatgcatcaacaagaagcattgtgagtttgtaaatcaaaatacaaaaaaaaaaaaaaac |
11828093 |
T |
|
| Q |
117 |
atactaagta--atataaaattctaacacc--acccctcaagctgaagcttactaaggtttaagcttgttacaaattaacc |
193 |
Q |
| |
|
||||||| || |||| || ||||||||| |||||||||| ||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
11828094 |
atactaaatataatatgaagttctaacacattacccctcaagttgaagattactaagccttaagcttgttacaaattaacc |
11828174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 15614537 - 15614591
Alignment:
| Q |
196 |
aaccaatgaagagcagcaaccaaagtgagctaccttcgtagagagagcagcaaga |
250 |
Q |
| |
|
|||||||| |||||| ||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
15614537 |
aaccaatggagagcatcaaccaaagtgagttatcttcgtagagagagcaacaaga |
15614591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 3890144 - 3890055
Alignment:
| Q |
105 |
aatacgaaaaacatactaagtaatataaaattctaacacc-acccctcaagctgaagcttactaaggtttaagcttgttacaaattaacc |
193 |
Q |
| |
|
||||| |||| |||| ||| ||||||||| |||||||| | || | | ||||| |||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
3890144 |
aatacaaaaatcatattaaataatataaagttctaacaactacactttaagctaaagcttactaagctttaaacttgttacaaattaacc |
3890055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 3889695 - 3889605
Alignment:
| Q |
104 |
aaatacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaaccc |
194 |
Q |
| |
|
|||||| |||| |||| ||| ||||||||| ||||||||| ||| | ||||| ||| || ||||| ||||| ||| |||||||||||||| |
|
|
| T |
3889695 |
aaatacaaaaatcatattaaataatataaagttctaacacttccctttaagctaaagtttgctaagctttaaacttattacaaattaaccc |
3889605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 44337378 - 44337349
Alignment:
| Q |
18 |
ataatctaagcccaatattttattatttaa |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
44337378 |
ataatctaagcccaatattttattatttaa |
44337349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 406
Target Start/End: Original strand, 46963591 - 46963663
Alignment:
| Q |
336 |
gagaagtgcaatgctatcaatcagaaaaatccataagggg--agaagtgcaatcactcagaagaatcaaaaga |
406 |
Q |
| |
|
|||||||||||||| ||||||| ||| || | ||| ||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
46963591 |
gagaagtgcaatgcaatcaatcggaagaaccaataggggagaagaagtgcaatcaatcagaagaatcaaaaga |
46963663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 16)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 8986969 - 8986783
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
106 |
Q |
| |
|
||||| ||||||||| |||||| |||| |||||||| ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
8986969 |
ataaatgcccaataacttaagcctaatactttattatctaacatctaccctcaaactcacaatgagtcaacaagaagcattctgagtttgtcatacaaaa |
8986870 |
T |
|
| Q |
107 |
tacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaacc |
193 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8986869 |
tacgaaaaacatactaaataatataaagttctaacactacccctcaagctgaagcttactaagctttaagcttgttacaaattaacc |
8986783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 38583560 - 38583742
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
106 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||| ||||||||| | ||||||||||||||||||||| |||||||| ||| |||| ||| ||||| |
|
|
| T |
38583560 |
ataaaggcccaataatttaagcctaatattttattatctaacatctaccttcaaactcacaatgagtcaacaagaagcattgtggatttgccaatcaaaa |
38583659 |
T |
|
| Q |
107 |
tacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaa |
191 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
38583660 |
tac-aaaaacatactaagtaatataaagttctaacactacccctcaagctgaagcttactaagctttaa-cttgttacaaattaa |
38583742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 195 - 405
Target Start/End: Original strand, 38583776 - 38583985
Alignment:
| Q |
195 |
gaaccaatgaagagcagcaaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaa |
294 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||| |
|
|
| T |
38583776 |
gaaccaattaagagcagcaaccaaagtgagttatcttcacagagagagcagcaagaaccactaccaccaaccaatccaatagaaaaccatccaaacaaaa |
38583875 |
T |
|
| Q |
295 |
gaaccggtagagataattagccatacataagaaccagtagagagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgcaatcactcaga |
394 |
Q |
| |
|
|||| ||||||| || |||||||| | | ||||| || ||||||||||||| | ||||||||||| ||| || | ||||||||||||||||| ||||| |
|
|
| T |
38583876 |
gaacaagtagagagaagtagccatatagattaaccaataaagagaagtgcaatacaatcaatcagaagaat-caaagggggagaagtgcaatcaatcaga |
38583974 |
T |
|
| Q |
395 |
agaatcaaaag |
405 |
Q |
| |
|
||||||||||| |
|
|
| T |
38583975 |
agaatcaaaag |
38583985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 32291197 - 32291010
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
106 |
Q |
| |
|
|||||| | |||||| ||||| ||||| |||||||| |||||| || ||||||||| ||||||||||||| |||||||| || |||||||||||||||| |
|
|
| T |
32291197 |
ataaagacacaataacttaagctcaatactttattatctaacatttaccctcaaacttacaatgagtcaacaagaagcattgttagtttgtcaaacaaaa |
32291098 |
T |
|
| Q |
107 |
tacgaaaaa-catactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaacc |
193 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
32291097 |
tacgaaaaaacatactaaataatataaagatctaacactacccctcaagctgaagcttactaagctttaagcttgttaccaattaacc |
32291010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 196 - 307
Target Start/End: Complemental strand, 32290979 - 32290868
Alignment:
| Q |
196 |
aaccaatgaagagcagcaaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaag |
295 |
Q |
| |
|
||||| || ||||||||||| |||||||| || |||||||||||||||||||||| || | || |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
32290979 |
aaccattggagagcagcaactaaagtgagttattttcgtagagagagcagcaagaatcatcatcatcaaccaatcaaagagagaaccatccaaacaaaag |
32290880 |
T |
|
| Q |
296 |
aaccggtagaga |
307 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
32290879 |
aaccagtagaga |
32290868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 1172913 - 1173017
Alignment:
| Q |
88 |
gtgagtttgtcaaacaaaatacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaa |
187 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || | ||||||| |||||| || ||| ||||||||||||||||| || |||||| |||||||||| |
|
|
| T |
1172913 |
gtgagtttgtcaaacaaaatacggaaaacataata--ttatataaagttctaatactacctctcaagctgaagcttacggagctttaagtttgttacaaa |
1173010 |
T |
|
| Q |
188 |
ttaaccc |
194 |
Q |
| |
|
||||||| |
|
|
| T |
1173011 |
ttaaccc |
1173017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 29409157 - 29409276
Alignment:
| Q |
24 |
taagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaa |
123 |
Q |
| |
|
||||| ||||| |||||||| ||||| ||| ||||||||||| ||| ||||| |||||| ||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
29409157 |
taagcacaatactttattatctaacacctaccctcaaactcatgatgcatcaacacgaagcactgtgagcttgtcaaacaaaatatgaaaaacatactaa |
29409256 |
T |
|
| Q |
124 |
gtaatataaaattctaacac |
143 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
29409257 |
acaatataaacttctaacac |
29409276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 336
Target Start/End: Complemental strand, 8986708 - 8986607
Alignment:
| Q |
237 |
agagagcagcaagaaccactaccaccaaccagtcaaatagaga--accatccaaacaaaagaaccggtagagataattagccatacataagaaccagtag |
334 |
Q |
| |
|
|||||||||||||||||| |||| |||||| ||||| ||||| ||||||||||||| |||||| ||||||| || |||||||||||||||||| ||| |
|
|
| T |
8986708 |
agagagcagcaagaaccatcaccatcaaccaatcaaagagagagaaccatccaaacaatagaaccagtagagagaagcagccatacataagaaccaatag |
8986609 |
T |
|
| Q |
335 |
ag |
336 |
Q |
| |
|
|| |
|
|
| T |
8986608 |
ag |
8986607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 20593563 - 20593659
Alignment:
| Q |
92 |
gtttgtcaaacaaaatacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaa |
191 |
Q |
| |
|
||||||||||||||| | ||||||||||||| ||||||| || |||||| || |||||| ||| ||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
20593563 |
gtttgtcaaacaaaa-atgaaaaacatactacgtaatatgaagttctaa-actacccctaaagttgaagtttactaag-tttaagcttgttacaaattaa |
20593659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 1173048 - 1173104
Alignment:
| Q |
196 |
aaccaatgaagagcagcaaccaaagtgagctaccttcgtagagagagcagcaagaac |
252 |
Q |
| |
|
|||||||| |||||||||| ||||||||| || |||||||||||||||||||||||| |
|
|
| T |
1173048 |
aaccaatggagagcagcaatcaaagtgagttatcttcgtagagagagcagcaagaac |
1173104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 327
Target Start/End: Original strand, 9047948 - 9048061
Alignment:
| Q |
212 |
caaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaagaaccggtagagataat |
311 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||| ||||| |||| |||||| ||||| |||||||||||||||||| |||| | ||||||| || |
|
|
| T |
9047948 |
caaccaaagtgagttatcttcgtagag--agcagcataaaccatcaccatcaaccaatcaaaaagagaaccatccaaacaatagaatcagtagagaaaag |
9048045 |
T |
|
| Q |
312 |
tagccatacataagaa |
327 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
9048046 |
gagtcatacataagaa |
9048061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 402
Target Start/End: Original strand, 29409326 - 29409424
Alignment:
| Q |
303 |
agagataattagccatacataagaaccagtagagagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgcaatcactcagaagaatcaa |
402 |
Q |
| |
|
|||||| |||| ||| ||| ||||| || ||| |||||||||||||| ||||||||||| ||| || |||||||| ||||||||| ||||||||||||| |
|
|
| T |
29409326 |
agagatgattaaccaaacagaagaatcaatagggagaagtgcaatgcaatcaatcagaagaat-caacaggggagacgtgcaatcaatcagaagaatcaa |
29409424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 8986438 - 8986367
Alignment:
| Q |
336 |
gagaagtgcaatgctat-caatcagaaaaatccataaggggagaagtgcaatcactcagaagaatcaaaaga |
406 |
Q |
| |
|
|||||||||||||| || ||||||||| || | ||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
8986438 |
gagaagtgcaatgcaatgcaatcagaagaaccaatagggggagaaatgcaatcaatcagaagaatcaaaaga |
8986367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 8986511 - 8986442
Alignment:
| Q |
336 |
gagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgcaatcactcagaagaatcaaaaga |
406 |
Q |
| |
|
|||||||||||||| ||||||| ||| || | ||| ||| ||||||||||||| || |||||||||||||| |
|
|
| T |
8986511 |
gagaagtgcaatgcaatcaatcggaagaaccaata-gggtagaagtgcaatcaatcggaagaatcaaaaga |
8986442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 38584024 - 38584094
Alignment:
| Q |
336 |
gagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgcaat-cactcagaagaatcaaaag |
405 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| | | |||||||||||| || || | |||||||||||||| |
|
|
| T |
38584024 |
gagaagtgcaatgcaatcactcagaaaaatcaaaagggggagaagtgcgatgcaattagaagaatcaaaag |
38584094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 20593699 - 20593778
Alignment:
| Q |
203 |
gaagagcagcaaccaaagtgagctaccttcgtagagagag--cagcaagaaccactaccaccaaccagtcaaatagagaa |
280 |
Q |
| |
|
|||||||||||||||||||||| || | || ||||||||| ||| |||||||| |||| ||||||| |||| |||||| |
|
|
| T |
20593699 |
gaagagcagcaaccaaagtgagttatcatcatagagagagaccagtaagaaccatcaccatcaaccagccaaagagagaa |
20593778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 16871693 - 16871507
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
106 |
Q |
| |
|
||||| ||||||||| |||||| |||| |||||||| ||||||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||| |
|
|
| T |
16871693 |
ataaatgcccaataacttaagcctaatactttattatctaacatctaccctcaaactcacaatgagtcaacaagaaacattctgagtttgtcaaacaaaa |
16871594 |
T |
|
| Q |
107 |
tacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaacc |
193 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
16871593 |
tacgaaaaacatactaaataatataaagttctaacactacccctcaagctgaagcttactaagctttaaacttgttacaaattaacc |
16871507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 54148268 - 54148130
Alignment:
| Q |
56 |
ctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaagtaatataaaattctaacaccacccctcaagc |
155 |
Q |
| |
|
|||||||||| ||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||| ||||||||| || |||||| ||||||||||| |
|
|
| T |
54148268 |
ctcaaactcatgatgcatcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacatagtaaataatataaacttttaacactacccctcaagc |
54148169 |
T |
|
| Q |
156 |
tgaagcttactaaggtttaagcttgttacaaattaaccc |
194 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
54148168 |
tgaagcttactaagctttaagcttgttacaaattaaccc |
54148130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 24131825 - 24131717
Alignment:
| Q |
35 |
ttttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacga-aaaacatactaagtaatataaa |
133 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||| ||||| |||||||| |||||||||| |||||||||||| ||||||||| || ||||||||| |
|
|
| T |
24131825 |
ttttattatctaacatctaccctcaaactcacaatgaatcaacaagaagcattgtgagtttgttcaacaaaatacgaaaaaacatacaaaataatataaa |
24131726 |
T |
|
| Q |
134 |
attctaaca |
142 |
Q |
| |
|
||||||||| |
|
|
| T |
24131725 |
attctaaca |
24131717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 193
Target Start/End: Complemental strand, 24226065 - 24225908
Alignment:
| Q |
36 |
tttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaagtaatataaaat |
135 |
Q |
| |
|
|||||||| ||||| || ||||||||||| ||| ||||| |||| ||| ||| |||||||||||||||||||||||| ||||||| ||||||||| | |
|
|
| T |
24226065 |
tttattatctaacacttaccctcaaactcatgatgcatcaacaagaatcattgtgggtttgtcaaacaaaatacgaaaaatatactaaataatataaact |
24225966 |
T |
|
| Q |
136 |
tctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaacc |
193 |
Q |
| |
|
|| ||||| |||||| ||| | |||||||||||| || ||||| ||||||||||||| |
|
|
| T |
24225965 |
tcgaacactacccctgaagttaaagcttactaagtttgaagctcattacaaattaacc |
24225908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 336
Target Start/End: Complemental strand, 16871432 - 16871331
Alignment:
| Q |
237 |
agagagcagcaagaaccactaccaccaaccagtcaaatagaga--accatccaaacaaaagaaccggtagagataattagccatacataagaaccagtag |
334 |
Q |
| |
|
||||| |||||||||||| |||| |||||| ||||| ||||| ||||||||||||| |||||| ||||||| || |||||||||||||||||| ||| |
|
|
| T |
16871432 |
agagaacagcaagaaccatcaccatcaaccaatcaaagagagagaaccatccaaacaatagaaccagtagagagaagcagccatacataagaaccaatag |
16871333 |
T |
|
| Q |
335 |
ag |
336 |
Q |
| |
|
|| |
|
|
| T |
16871332 |
ag |
16871331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 7259055 - 7259102
Alignment:
| Q |
146 |
cccctcaagctgaagcttactaaggtttaagcttgttacaaattaacc |
193 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
7259055 |
cccctcaagctgaaacttactaagttttaagcttgttacaaattaacc |
7259102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 16871191 - 16871118
Alignment:
| Q |
334 |
gagagaagtgcaatgctatcaatcagaaaaatccataa--ggggagaagtgcaatcactcagaagaatcaaaag |
405 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| | || ||||||||||||||||| ||||||||| |||||| |
|
|
| T |
16871191 |
gagagaagtgcaatgcaatcaatcagacgaatcaaaaaagggggagaagtgcaatcaatcagaagaaccaaaag |
16871118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 16870969 - 16870898
Alignment:
| Q |
336 |
gagaagtgcaatgctat-caatcagaaaaatccataaggggagaagtgcaatcactcagaagaatcaaaaga |
406 |
Q |
| |
|
|||||||||||||| || ||||||||| || | ||| | |||||| |||||||| ||||||||||||||||| |
|
|
| T |
16870969 |
gagaagtgcaatgcaatgcaatcagaagaaccaataggtggagaaatgcaatcaatcagaagaatcaaaaga |
16870898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 7258651 - 7258689
Alignment:
| Q |
93 |
tttgtcaaacaaaatacgaaaaacatactaagtaatata |
131 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
7258651 |
tttgtcaaataaaatacgaaaaacatactaaataatata |
7258689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 16871042 - 16870973
Alignment:
| Q |
336 |
gagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgcaatcactcagaagaatcaaaaga |
406 |
Q |
| |
|
|||||||||||||| ||||||| ||| || | ||| ||||| ||||||||||| || |||||||||||||| |
|
|
| T |
16871042 |
gagaagtgcaatgcaatcaatcggaagaaccaata-ggggaaaagtgcaatcaatcggaagaatcaaaaga |
16870973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 196 - 405
Target Start/End: Original strand, 9168014 - 9168223
Alignment:
| Q |
196 |
aaccaatgaagagcagcaaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaag |
295 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||| ||||||||||| ||||||||| |||| ||||||||||| ||| || |||||||||||||| |
|
|
| T |
9168014 |
aaccaatggagagcagcaaccaaagtgagttatcttcatagagagagcatcaagaaccatcaccattaaccagtcaaagagaaaatcatccaaacaaaag |
9168113 |
T |
|
| Q |
296 |
aaccggtagagataattagccatacataagaaccagtagagagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgcaatcactcagaa |
395 |
Q |
| |
|
|||| ||||||| || |||||||||||||||| || ||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||| |||||| |
|
|
| T |
9168114 |
aaccagtagagagaagtagccatacataagaatcaataggtagaagtgcaatgctatcaattagaagaatccataaagggagaagtgcaatcgatcagaa |
9168213 |
T |
|
| Q |
396 |
gaatcaaaag |
405 |
Q |
| |
|
|||||||||| |
|
|
| T |
9168214 |
gaatcaaaag |
9168223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 2071602 - 2071784
Alignment:
| Q |
10 |
aaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatac |
109 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| || ||||||||||| ||| | ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
2071602 |
aaggcccaatagcttaagcccaatattttattatctaacacctgccctcaaactcatgatgcattaacaagaagcattctgagtttgtcaaacaaaatac |
2071701 |
T |
|
| Q |
110 |
gaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaag-gtttaagcttgttacaaattaa |
191 |
Q |
| |
|
|||||||||||||| ||||||||| || |||||| |||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
2071702 |
gaaaaacatactaaataatataaacttgtaacactacccctcaagctaaagcttactaagcgtttaagcttgttacaaattaa |
2071784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 2075132 - 2075314
Alignment:
| Q |
10 |
aaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatac |
109 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| || ||||||||||| ||| | ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
2075132 |
aaggcccaatagcttaagcccaatattttattatctaacacctgccctcaaactcatgatgcattaacaagaagcattctgagtttgtcaaacaaaatac |
2075231 |
T |
|
| Q |
110 |
gaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaag-gtttaagcttgttacaaattaa |
191 |
Q |
| |
|
|||||||||||||| ||||||||| || |||||| |||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
2075232 |
gaaaaacatactaaataatataaacttgtaacactacccctcaagctaaagcttactaagcgtttaagcttgttacaaattaa |
2075314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 15629416 - 15629605
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
106 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| ||||||| | ||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
15629416 |
ataaaggtccaataacttaagcccaatattttattatctaacatccaccctcaaactcacaatgagtcaacaagaagcattgtgagtttgtcaaacaaaa |
15629515 |
T |
|
| Q |
107 |
tacgaaaaacatactaagtaata----taaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaac |
192 |
Q |
| |
|
|||||||||| | | | | || | || |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15629516 |
tacgaaaaaccaaattaacactacccctcaagctctaacactacccctcaagctgaagcttactaagctttaagcttgttacaaattaac |
15629605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 36 - 194
Target Start/End: Original strand, 3774414 - 3774572
Alignment:
| Q |
36 |
tttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaagtaatataaaat |
135 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| || ||||| |||||||| |||||||||||||||||||||| ||||||||| ||| |||||||| | |
|
|
| T |
3774414 |
tttattatctaacatctaccctcaaactcatgattcatcaacaagaagcattgtgagtttgtcaaacaaaataccaaaaacatattaaaaaatataaact |
3774513 |
T |
|
| Q |
136 |
tctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaaccc |
194 |
Q |
| |
|
||||||| |||||||||| | |||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
3774514 |
tctaacattacccctcaagttaaagcttactaagctttatgcttgttacaaattaaccc |
3774572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 11993621 - 11993486
Alignment:
| Q |
55 |
cctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaagtaatataaaattctaacaccacccctcaag |
154 |
Q |
| |
|
||||||||||| ||| ||||| |||||||| |||||||||||||| |||||||||||| |||||||| ||||||||| ||||||||| |||||||||| |
|
|
| T |
11993621 |
cctcaaactcaagatgcatcaacaagaagcattgtgagtttgtcaaataaaatacgaaaa-catactaaataatataaacttctaacactacccctcaag |
11993523 |
T |
|
| Q |
155 |
ctgaagcttactaaggtttaagcttgttacaaattaac |
192 |
Q |
| |
|
| ||||||| |||| ||||||||||||| |||||||| |
|
|
| T |
11993522 |
ttaaagcttattaagatttaagcttgtta-aaattaac |
11993486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 212 - 336
Target Start/End: Original strand, 15629658 - 15629782
Alignment:
| Q |
212 |
caaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaagaaccggtagagataat |
311 |
Q |
| |
|
||||||||||||| || ||||| |||||||||||||||||||| | || |||||| ||||| ||||||||||||||| || |||||| ||||||| | |
|
|
| T |
15629658 |
caaccaaagtgagttatcttcgcagagagagcagcaagaaccatcatcatcaaccaatcaaagagagaaccatccaaaaaatagaaccagtagagagatg |
15629757 |
T |
|
| Q |
312 |
tagccatacataagaaccagtagag |
336 |
Q |
| |
|
| |||||||||||||||| ||||| |
|
|
| T |
15629758 |
caaccatacataagaaccaatagag |
15629782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 10354312 - 10354215
Alignment:
| Q |
99 |
aaacaaaatacgaaaaa--catactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaaccc |
194 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||| ||||||||| || | ||||||| |||||||||||| |||||| |||||| |||||||||| |
|
|
| T |
10354312 |
aaacaaaatacgaaaaaaacatactaaataatataaagttctaacactactcttcaagctaaagcttactaagctttaagtttgttagaaattaaccc |
10354215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 9167912 - 9167972
Alignment:
| Q |
73 |
tcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaagtaatataaa |
133 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||||||||||||||| ||||| ||||||||| |
|
|
| T |
9167912 |
tcaacaagaagcattgtgagtttgtcaaataaaatacgaaaaacaaactaaataatataaa |
9167972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 11749751 - 11749805
Alignment:
| Q |
89 |
tgagtttgtcaaacaaaatacgaaaaacatactaagtaatataaaattctaacac |
143 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| ||||||||| ||||||||| |
|
|
| T |
11749751 |
tgagtttgtcaaacaaaatacaataaacatactaaataatataaagttctaacac |
11749805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 15630215 - 15630257
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaaca |
49 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
15630215 |
ataaaggcccaataatttaagctcaatactttattatttaaca |
15630257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 21991609 - 21991577
Alignment:
| Q |
162 |
ttactaaggtttaagcttgttacaaattaaccc |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
21991609 |
ttacaaaggtttaagcttgttacaaattaaccc |
21991577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 21995538 - 21995506
Alignment:
| Q |
162 |
ttactaaggtttaagcttgttacaaattaaccc |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
21995538 |
ttacaaaggtttaagcttgttacaaattaaccc |
21995506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 22000555 - 22000511
Alignment:
| Q |
150 |
tcaagctgaagcttactaaggtttaagcttgttacaaattaaccc |
194 |
Q |
| |
|
||||| ||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
22000555 |
tcaagttgaagattacaagggtttaagcttgttacaaattaaccc |
22000511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 22041623 - 22041579
Alignment:
| Q |
150 |
tcaagctgaagcttactaaggtttaagcttgttacaaattaaccc |
194 |
Q |
| |
|
||||| ||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
22041623 |
tcaagttgaagattacaagggtttaagcttgttacaaattaaccc |
22041579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 29958953 - 29958913
Alignment:
| Q |
146 |
cccctcaagctgaagcttactaaggtttaagcttgttacaa |
186 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
29958953 |
cccctcaagctaaagcttactaagctttaagcctgttacaa |
29958913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 5e-54; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 24137639 - 24137452
Alignment:
| Q |
8 |
taaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaat |
107 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||| | ||| ||||| ||||||||||||||||| ||||| ||||| || |||||||||||||||||||| |
|
|
| T |
24137639 |
taaaggcccaataactgaagctcaatactttattgtctaaaatctaccctcaaactcacaatgaatcaacaagaaggattgtgagtttgtcaaacaaaat |
24137540 |
T |
|
| Q |
108 |
acgaaaaa-catactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaaccc |
194 |
Q |
| |
|
|||||||| |||||||| ||||||||| ||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24137539 |
acgaaaaaacatactaaataatataaagttctaacactacccctcaagctaaagcttactaagctttaagcttgttacaaattaaccc |
24137452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 9512483 - 9512316
Alignment:
| Q |
24 |
taagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaa |
123 |
Q |
| |
|
|||| |||||| ||||| || ||||||||| ||||||||||| ||| ||||| ||||| || |||||||||||| |||||||| |||||||||||||| |
|
|
| T |
9512483 |
taagtccaatactttatcatctaacatctaccctcaaactcatgatgcatcaacaagaagtattgtgagtttgtcatacaaaatatgaaaaacatactaa |
9512384 |
T |
|
| Q |
124 |
gtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaaccc |
194 |
Q |
| |
|
||||||||| ||||||||| |||| ||||||||| ||||| | | ||||||||||||||||||||||| |
|
|
| T |
9512383 |
ataatataaagttctaacacaacccatcaagctgatgcttaatta---ttaagcttgttacaaattaaccc |
9512316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 195 - 331
Target Start/End: Complemental strand, 24137422 - 24137286
Alignment:
| Q |
195 |
gaaccaatgaagagcagcaaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaa |
294 |
Q |
| |
|
||||||||||||||||||||||||| |||| || |||| ||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||| | |
|
|
| T |
24137422 |
gaaccaatgaagagcagcaaccaaaatgagttatcttcatagagagagcagcaagaaccatcaccatcaaccaatcaaatagagaaccatccaaacaata |
24137323 |
T |
|
| Q |
295 |
gaaccggtagagataattagccatacataagaaccag |
331 |
Q |
| |
|
||||| |||||| || || ||||||||||| |||| |
|
|
| T |
24137322 |
gaaccattagagagaagcagtcatacataagatccag |
24137286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 189
Target Start/End: Complemental strand, 27315265 - 27315112
Alignment:
| Q |
36 |
tttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaagtaatataaaat |
135 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||| ||| ||||| ||||| || |||||||||||||||||||| ||||| ||| ||| |||||| || | |
|
|
| T |
27315265 |
tttattatctaacaactaccctcaaactcatgatgcatcaacaagaagtattacgagtttgtcaaacaaaataccaaaaatatattaaataatatgaagt |
27315166 |
T |
|
| Q |
136 |
tctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaatt |
189 |
Q |
| |
|
| |||||| |||||||||| | |||||||||||| ||||||||||||||||||| |
|
|
| T |
27315165 |
tttaacactacccctcaaggtaaagcttactaagttttaagcttgttacaaatt |
27315112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 11320618 - 11320677
Alignment:
| Q |
135 |
ttctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaaccc |
194 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11320618 |
ttctaacactacccatcaagctgaagcttactaagctttaagcttgttacaaattaaccc |
11320677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 405
Target Start/End: Complemental strand, 9511999 - 9511929
Alignment:
| Q |
335 |
agagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgcaatcactcagaagaatcaaaag |
405 |
Q |
| |
|
||||||||||||||| | |||| |||| |||| ||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
9511999 |
agagaagtgcaatgcaaacaatgagaagaatcaatatggggagaagtgcaatcaatcagaagaatcaaaag |
9511929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 11335313 - 11335382
Alignment:
| Q |
336 |
gagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgcaatcactcagaagaatcaaaag |
405 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| ||| ||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
11335313 |
gagaagtgcaatgcaatcaatcagaagaatcaatagggggagaagtgtaatcaatcaaaagaatcaaaag |
11335382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 18050960 - 18050878
Alignment:
| Q |
84 |
catcgtgagtttgtcaaacaaaatacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttacta |
167 |
Q |
| |
|
||||| ||||||||||||| ||| |||||||| |||||| ||||||||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
18050960 |
catcgagagtttgtcaaacgaaaaacgaaaaatatactatataatataaagttctaacacca-tcctcaaactgaagcttacta |
18050878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 11320717 - 11320811
Alignment:
| Q |
205 |
agagcagcaaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaagaacc |
299 |
Q |
| |
|
|||||| ||||||||||||| || | || |||||| ||| |||| |||| |||| |||||| ||||| ||||||||||| ||||| ||||||| |
|
|
| T |
11320717 |
agagcaacaaccaaagtgagttatcatcaaagagagggcaacaagcaccatcaccatcaaccactcaaagagagaaccatctaaacataagaacc |
11320811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 40784171 - 40784069
Alignment:
| Q |
36 |
tttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaagtaatataaaat |
135 |
Q |
| |
|
|||||||| ||| ||||| ||||||||| | ||| | ||| |||||||| | |||||||||||||||||| ||||||||| |||| ||| ||||| | |
|
|
| T |
40784171 |
tttattatctaatatctaccctcaaacttatgatgcattaacaagaagcattattagtttgtcaaacaaaatatgaaaaacattctaaataaaataaagt |
40784072 |
T |
|
| Q |
136 |
tct |
138 |
Q |
| |
|
||| |
|
|
| T |
40784071 |
tct |
40784069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 814456 - 814591
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
106 |
Q |
| |
|
||||| ||||||||| |||| |||||| |||||||| ||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||||| |
|
|
| T |
814456 |
ataaatgcccaataacttaagtccaatactttattatctaacatctaccctcaaactcacaatgagtcaacaagaaacattgtgagtttgtcaaacaaaa |
814555 |
T |
|
| Q |
107 |
tacgaaaaacatactaagtaatataaaattctaaca |
142 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||||| |
|
|
| T |
814556 |
tacgaaaaacatactaaataatataaagttttaaca |
814591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 25 - 175
Target Start/End: Complemental strand, 42531313 - 42531164
Alignment:
| Q |
25 |
aagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaag |
124 |
Q |
| |
|
||||||||| |||||||| ||||||||| ||||||||||||||||||||||| | |||||| |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
42531313 |
aagcccaatcctttattatctaacatctaccctcaaactcacaatgagtcaacaa-aagcattgtgagtttttcaaacaaaatatgaaaaacatactaaa |
42531215 |
T |
|
| Q |
125 |
taatataaaattctaacaccacccctcaagctgaagcttactaaggtttaa |
175 |
Q |
| |
|
|| |||||| ||||||||| | ||||||| ||||||||||||||| ||||| |
|
|
| T |
42531214 |
tagtataaagttctaacactaaccctcaaactgaagcttactaagctttaa |
42531164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 814302 - 814167
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
106 |
Q |
| |
|
||||| ||||||||| |||| |||||| |||||||| ||||| ||| |||||||||| |||||||||||| |||| ||| |||| |||||||||||||| |
|
|
| T |
814302 |
ataaatgcccaataacttaagtccaatactttattatctaacaactaccctcaaactctcaatgagtcaacaagaaacattgtgactttgtcaaacaaaa |
814203 |
T |
|
| Q |
107 |
tacgaaaaacatactaagtaatataaaattctaaca |
142 |
Q |
| |
|
|||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
814202 |
tacgaagaacatactaaataatataaagttctaaca |
814167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 46691517 - 46691633
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
106 |
Q |
| |
|
||||||| ||||||| |||| ||||| |||||||| ||||||||| ||||||||| ||||||||||||| |||||||| |||||||||| |||||||| |
|
|
| T |
46691517 |
ataaaggtccaataacttaagttcaatactttattatctaacatctaccctcaaacttacaatgagtcaacaagaagcattgtgagtttgttaaacaaaa |
46691616 |
T |
|
| Q |
107 |
tacgaaaaacatactaa |
123 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
46691617 |
tacgaaaaacatactaa |
46691633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 22821000 - 22821115
Alignment:
| Q |
79 |
agaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagct |
178 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||| ||| ||| ||||||||| ||||||||| |||||| ||||| |||| ||||||| ||||| || |
|
|
| T |
22821000 |
agaagcattgtgagtttgtcaaacaaaatatgaaaaagatattaaataatataaagttctaacactacccctaaagctaaagcctactaagctttaaact |
22821099 |
T |
|
| Q |
179 |
tgttacaaattaaccc |
194 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
22821100 |
tgttacaaattaaccc |
22821115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 50297502 - 50297380
Alignment:
| Q |
7 |
ataaaggcccaataatctaagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaa |
106 |
Q |
| |
|
|||||| | |||||| ||||| ||||| |||||||| ||||||||| ||||||| |||||||||||||| |||| ||| ||||||||||||||||||| |
|
|
| T |
50297502 |
ataaagactcaataacttaagcacaatactttattatctaacatctaccctcaaatccacaatgagtcaacaagaaacattgtgagtttgtcaaacaaaa |
50297403 |
T |
|
| Q |
107 |
tacgaaaaacatactaagtaata |
129 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
50297402 |
tacgaaaaacatactaaataata |
50297380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 16462992 - 16462819
Alignment:
| Q |
24 |
taagcccaatattttattatttaacatctatcctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaa |
123 |
Q |
| |
|
||||| ||||| |||||||| |||| ||| ||||||||||| ||| |||| |||||||| |||||||||||||||| |||| |||||||||||||| |
|
|
| T |
16462992 |
taagctcaatactttattatctaacgcctaccctcaaactcatgatgcaacaacaagaagcattgtgagtttgtcaaacagaatatgaaaaacatactaa |
16462893 |
T |
|
| Q |
124 |
gtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaacccgaa |
197 |
Q |
| |
|
||||||||| ||||||||| |||||||||| ||| ||||| ||| |||| | |||||||| |||| |||||| |
|
|
| T |
16462892 |
ataatataaagttctaacactacccctcaagttgagtcttaccaagctttatgtttgttacatattatcccgaa |
16462819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 212 - 335
Target Start/End: Complemental strand, 50296088 - 50295965
Alignment:
| Q |
212 |
caaccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaagaaccggtagagataat |
311 |
Q |
| |
|
|||||||| | || || |||||||||||||||||||| ||||| | || |||||| ||||| |||||||||||||||||| |||||| ||| ||| || |
|
|
| T |
50296088 |
caaccaaacttagttatcttcgtagagagagcagcaaaaaccatcatcatcaaccaatcaaagagagaaccatccaaacaatagaaccagtatagagaag |
50295989 |
T |
|
| Q |
312 |
tagccatacataagaaccagtaga |
335 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
50295988 |
cagccatacataagaaccaataga |
50295965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 46691751 - 46691835
Alignment:
| Q |
215 |
ccaaagtgagctaccttcgtagagagagcagcaagaaccactaccaccaaccagtcaaatagagaaccatccaaacaaaagaacc |
299 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||| ||||| | || |||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
46691751 |
ccaaagtgagttatctttgtagagagagcagcaataaccatcaacatcaaccaatcaaatagagaaccatccaaacaatagaacc |
46691835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 50296205 - 50296139
Alignment:
| Q |
128 |
tataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaaccc |
194 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
50296205 |
tataaagttctaacattacccctcaagccgaagcttactaagctttaggcttgttacaaattaaccc |
50296139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 34338129 - 34338082
Alignment:
| Q |
145 |
acccctcaagctgaagcttactaaggtttaagcttgttacaaattaac |
192 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| |||||||||||||||| |
|
|
| T |
34338129 |
acccctcaagctaaagcttactaagctttaaacttgttacaaattaac |
34338082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 405
Target Start/End: Complemental strand, 42530879 - 42530813
Alignment:
| Q |
339 |
aagtgcaatgctatcaatcagaaaaatccataaggggagaagtgcaatcactcagaagaatcaaaag |
405 |
Q |
| |
|
||||| ||||| ||||||||||| |||| | | ||| ||||||||||||| |||||||||||||||| |
|
|
| T |
42530879 |
aagtgaaatgcaatcaatcagaagaatcaaaaggggaagaagtgcaatcaatcagaagaatcaaaag |
42530813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 193
Target Start/End: Original strand, 2593210 - 2593343
Alignment:
| Q |
55 |
cctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaacatactaagtaatataaaattctaacaccacccctcaag |
154 |
Q |
| |
|
||||||||||| ||| ||| | |||| ||| |||||||||| ||| |||||||||||||||| | ||||||||| |||||||| | |||||||| |
|
|
| T |
2593210 |
cctcaaactcatcatgcatcagcaagaaacattgtgagtttgttaaagaaaatacgaaaaacat----aataatataaagttctaacaata-ccctcaag |
2593304 |
T |
|
| Q |
155 |
ctgaagcttactaaggtttaagcttgttacaaattaacc |
193 |
Q |
| |
|
|||||||||||| || ||||||||| ||||||||| |
|
|
| T |
2593305 |
taaaagcttactaagcttctagcttgttaaaaattaacc |
2593343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0499 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0499
Description:
Target: scaffold0499; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 7028 - 7110
Alignment:
| Q |
111 |
aaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaacc |
193 |
Q |
| |
|
||||||||||||| | |||||| ||||||||| |||||| ||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7028 |
aaaaacatactaaaaagtataaacttctaacactaccccttaagctaaagcttactaaggtttaagctcgttacaaattaacc |
7110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 32015 - 31956
Alignment:
| Q |
134 |
attctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaattaacc |
193 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||||||| |||||||||||||||||| |||| |
|
|
| T |
32015 |
attctaacactccccctcaggctaaagcttactaagctttaagcttgttacaaataaacc |
31956 |
T |
|
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Target: scaffold0048 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 187
Target Start/End: Original strand, 61983 - 62081
Alignment:
| Q |
89 |
tgagtttgtcaaacaaaatacgaaaaacatactaagtaatataaaattctaacaccacccctcaagctgaagcttactaaggtttaagcttgttacaaa |
187 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| | ||||||||| | ||| | |||| ||||||| |||||||| ||| |||||| |||||||||| |
|
|
| T |
61983 |
tgagtttgtcaaacaaaaaacaaaaaaaatactcaataatataaactcagaaccctacccgtcaagctaaagcttaccaagttttaagtttgttacaaa |
62081 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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