View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4689_high_13 (Length: 335)

Name: NF4689_high_13
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4689_high_13
NF4689_high_13
[»] chr6 (2 HSPs)
chr6 (33-320)||(25521862-25522149)
chr6 (1-37)||(25522161-25522197)
[»] chr5 (7 HSPs)
chr5 (36-320)||(34239397-34239681)
chr5 (52-319)||(42124495-42124762)
chr5 (44-232)||(42129862-42130050)
chr5 (36-320)||(34231645-34231929)
chr5 (36-150)||(41712561-41712675)
chr5 (229-321)||(41712474-41712565)
chr5 (129-186)||(41570984-41571041)
[»] chr4 (1 HSPs)
chr4 (66-320)||(11119079-11119333)
[»] chr2 (2 HSPs)
chr2 (47-321)||(12249464-12249738)
chr2 (117-238)||(32680976-32681101)
[»] chr3 (1 HSPs)
chr3 (66-223)||(8524039-8524196)


Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 33 - 320
Target Start/End: Complemental strand, 25522149 - 25521862
Alignment:
Q  33 ttagatagatataaatgtaccaaagaaggtaaagataacaaagaggaaggaattgttccatttaacaagttgtcatgtaaacttaaatcagttagctttt 132  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25522149 ttagatagatataaatataccaaagaaggcaaagataacaaagaggaaggaattgttccatttaacaagttgtcatgtaaacttaaatcagttagctttt 25522050  T
Q  133 ggaaccctataattttgttaggtaaaggaccctctaatttattattagaacaatataacaacttaagaccagtcaagttaaataatgaagatggaatttg 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||    
T  25522049 ggaaccctataattttgttaggtaaaggaccctctaatttattattagaacaatataacaacttaagaccagtcaatttaaataacgaagatggaatctg 25521950  T
Q  233 tccttctaatttgttaaaatatagatcgagttcttgcagtttggtcatcccactgaacacatctgggatttgacctctaaatgaattg 320  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||    
T  25521949 tccttctaatttgttaaaatatagatcgagttcttgcaatttggtcatcccaccgaacacgtctgggatttgacctctaaatgaattg 25521862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25522161 - 25522197
Alignment:
Q  1 caggatctatcagtgcaacctcatcatattccttaga 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  25522161 caggatctatcagtgcaacctcatcatattccttaga 25522197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 36 - 320
Target Start/End: Complemental strand, 34239681 - 34239397
Alignment:
Q  36 gatagatataaatgtaccaaagaaggtaaagataacaaagaggaaggaattgttccatttaacaagttgtcatgtaaacttaaatcagttagcttttgga 135  Q
    |||||||| | | ||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||| ||| || |||| | |||||||||| |    
T  34239681 gatagatacagaagtaccaaagaaggcaaagataacaaggaggaaggaattgttccatttagcaagttgtcatttaacctcaaataaattagcttttgaa 34239582  T
Q  136 accctataattttgttaggtaaaggaccctctaatttattattagaacaatataa--caacttaagaccagtcaagttaaataatgaagatggaatttgt 233  Q
    | |||  |||||| ||| |||  ||||||||||||||||||| || ||||| |||  ||||  |||   | |||||||||||||||||||||||||||||    
T  34239581 aacctgcaattttattatgtagtggaccctctaatttattataagcacaatctaaatcaac--aagttgattcaagttaaataatgaagatggaatttgt 34239484  T
Q  234 ccttctaatttgttaaaatatagatcgagttcttgcagtttggtcatcccactgaacacatctgggatttgacctctaaatgaattg 320  Q
    ||||||||||||||| ||  ||||| || | |||||||||||||||||| ||  || ||||||||||||||||| |||| |||||||    
T  34239483 ccttctaatttgttagaagctagatagaatacttgcagtttggtcatcctaccaaatacatctgggatttgaccgctaagtgaattg 34239397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 52 - 319
Target Start/End: Original strand, 42124495 - 42124762
Alignment:
Q  52 ccaaagaaggtaaagataacaaagaggaaggaattgttccatttaacaagttgtcatgtaaacttaaatcagttagcttttggaaccctataattttgtt 151  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||| | |||| | ||||   ||||||||||||  ||| ||||||||||    
T  42124495 ccaaagaaggcaaagataacaaggaggaaggaactgttccatttagcaagttgtcttttaaattcaaatacattagcttttggagtcctgtaattttgtt 42124594  T
Q  152 aggtaaaggaccctctaatttattattagaacaatataacaacttaagaccagtcaagttaaataatgaagatggaatttgtccttctaatttgttaaaa 251  Q
     ||||  |||||||||||||| |||     ||||| |||      |||   |||||||||||||| |||||||||||||||||||||||| |||||  ||    
T  42124595 gggtaggggaccctctaatttgttacctctacaatctaatgtgaaaagctgagtcaagttaaatagtgaagatggaatttgtccttctaaattgttggaa 42124694  T
Q  252 tatagatcgagttcttgcagtttggtcatcccactgaacacatctgggatttgacctctaaatgaatt 319  Q
      || |||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||    
T  42124695 gttaaatcgagttcttgcagtttggtcatcccaccaaacacatctgggatttgaccactaaatgaatt 42124762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 44 - 232
Target Start/End: Original strand, 42129862 - 42130050
Alignment:
Q  44 taaatgtaccaaagaaggtaaagataacaaagaggaaggaattgttccatttaacaagttgtcatgtaaacttaaatcagttagcttttggaaccctata 143  Q
    |||||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||||| |||||| |||||||||| ||    
T  42129862 taaatgaaccaaagacggcaaagataacaaggaggaaggaattgttccatttaacaagttgtcatttaatctcaaatcatttagctcttggaaccctgta 42129961  T
Q  144 attttgttaggtaaaggaccctctaatttattattagaacaatataacaacttaagaccagtcaagttaaataatgaagatggaatttg 232  Q
     ||||||| ||||  ||||||||||||||||| |||||||||| |||    | |||   | ||||||||||||||||||||||||||||    
T  42129962 gttttgttgggtatgggaccctctaatttatttttagaacaatctaatgtataaagttgattcaagttaaataatgaagatggaatttg 42130050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 320
Target Start/End: Complemental strand, 34231929 - 34231645
Alignment:
Q  36 gatagatataaatgtaccaaagaaggtaaagataacaaagaggaaggaattgttccatttaacaagttgtcatgtaaacttaaatcagttagcttttgga 135  Q
    ||||||||||||| || ||||  ||| ||||||||||||||||||||||||||||| ||||    |||||||| |||||  |||  |  ||||| ||| |    
T  34231929 gatagatataaatttagcaaacgaggcaaagataacaaagaggaaggaattgttccgtttagacggttgtcatttaaacgaaaacgaactagctgttgaa 34231830  T
Q  136 accctataattttgttaggtaaaggaccctctaatttattattagaacaatataacaacttaagaccagtcaagttaaataatgaagatggaatttgtcc 235  Q
    | ||| ||||||| || || || |||||   |||||||||||  |||||||  ||      |||   |||||| |||||||| |||  ||||||||||||    
T  34231829 aacctgtaattttatttggcaatggacctcttaatttattatatgaacaatcgaatctaacaagttgagtcaacttaaataaggaaagtggaatttgtcc 34231730  T
Q  236 ttctaatttgttaaaatatagatcgagttcttgcagtttggtcatcccactgaacacatctgggatttgacctctaaatgaattg 320  Q
    | |||| |||||  ||||||||  |||||||||||||||||||||||| |  || |||||||| |||||||| || |||||||||    
T  34231729 tactaaattgtttgaatatagacggagttcttgcagtttggtcatcccgccaaatacatctggaatttgaccgcttaatgaattg 34231645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 41712675 - 41712561
Alignment:
Q  36 gatagatataaatgtaccaaagaaggtaaagataacaaagaggaaggaattgttccatttaacaagttgtcatgtaaacttaaatcagttagcttttgga 135  Q
    ||||||| ||||| | |||||||||| || || ||||| |||| |||||||| |||||||||||||||| ||| ||||   |||| ||||||||||||||    
T  41712675 gatagatctaaatcttccaaagaaggaaaggaaaacaaggagggaggaattgctccatttaacaagttgccatttaaatacaaattagttagcttttgga 41712576  T
Q  136 accctataattttgt 150  Q
    ||||| |||||||||    
T  41712575 accctgtaattttgt 41712561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 321
Target Start/End: Complemental strand, 41712565 - 41712474
Alignment:
Q  229 tttgtccttctaatttgttaaaatatagatcgagttcttgcagtttggtcatcccactgaacacatctgggatttgacctctaaatgaattga 321  Q
    ||||||||| ||| |||||| | | |||||  |||||||||| ||||||||||||||  ||||||||||| |||||||| |||||||||||||    
T  41712565 tttgtccttttaaattgttagactctagatacagttcttgca-tttggtcatcccaccaaacacatctggtatttgaccgctaaatgaattga 41712474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 41571041 - 41570984
Alignment:
Q  129 ttttggaaccctataattttgttaggtaaaggaccctctaatttattattagaacaat 186  Q
    ||||| |||||| | |||||||| |||| |||||||| ||||||||||| ||||||||    
T  41571041 ttttgaaaccctgttattttgttgggtagaggaccctttaatttattataagaacaat 41570984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 66 - 320
Target Start/End: Original strand, 11119079 - 11119333
Alignment:
Q  66 gataacaaagaggaaggaattgttccatttaacaagttgtcatgtaaacttaaatcagttagcttttggaaccctataattttgttaggtaaaggaccct 165  Q
    |||||||| |||||||||||||||||||||| ||||||||||| ||| || ||||  |||||||||||||||||| |||||||||| || |  ||||| |    
T  11119079 gataacaaggaggaaggaattgttccatttatcaagttgtcatttaatctcaaatttgttagcttttggaaccctgtaattttgttgggcaggggaccat 11119178  T
Q  166 ctaatttattattagaacaatataa--caacttaagaccagtcaagttaaataatgaagatggaatttgtccttctaatttgttaaaatatagatcgagt 263  Q
    ||||||||||||||||||||  |||  ||||  |||   |||||||||||||||||| |||||||||||||||||||| |||||| ||| ||  ||||||    
T  11119179 ctaatttattattagaacaacctaatgcaac--aagttgagtcaagttaaataatgatgatggaatttgtccttctaacttgttataatctaagtcgagt 11119276  T
Q  264 tcttgcagtttggtcatcccactgaacacatctgggatttgacctctaaatgaattg 320  Q
    ||||||||||| ||||||||||  ||||||||||| ||| |||| ||||||| ||||    
T  11119277 tcttgcagttttgtcatcccaccaaacacatctggtattggaccgctaaatgcattg 11119333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 47 - 321
Target Start/End: Original strand, 12249464 - 12249738
Alignment:
Q  47 atgtaccaaagaaggtaaagataacaaagaggaaggaattgttccatttaacaagttgtcatgtaaacttaaatcagttagcttttggaaccctataatt 146  Q
    |||| |||||||||| ||||||||||| | || |||||||||||| ||||  ||||| |||  |||||| |||| ||||| |||||| |||||| | |||    
T  12249464 atgttccaaagaaggcaaagataacaaggtgggaggaattgttccgtttagaaagttatcacttaaactgaaataagttaacttttgaaaccctgtgatt 12249563  T
Q  147 ttgttaggtaaaggaccctctaatttattattagaacaatataacaacttaagaccagtcaagttaaataatgaagatggaatttgtccttctaatttgt 246  Q
    |||||    |  ||||| |||||||| ||||  ||||||| |||      |||   ||||||||||||||||||| | ||||||||||||| ||||||||    
T  12249564 ttgttgccaaggggaccttctaatttgttatgcgaacaatctaatgtaacaagttgagtcaagttaaataatgaaaacggaatttgtccttgtaatttgt 12249663  T
Q  247 taaaatatagatcgagttcttgcagtttggtcatcccactgaacacatctgggatttgacctctaaatgaattga 321  Q
    |  ||  ||||| |||||||||||||||||||||| |||| ||||||||||| |||||||| |||||||||||||    
T  12249664 ttgaagctagattgagttcttgcagtttggtcatcgcactaaacacatctggtatttgaccgctaaatgaattga 12249738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 238
Target Start/End: Complemental strand, 32681101 - 32680976
Alignment:
Q  117 aaatcagttagcttttggaaccctataattttgt----taggtaaaggaccctctaatttattattagaacaatataa--caacttaagaccagtcaagt 210  Q
    ||||||||||||||||||||||||  ||||||||    || ||| |||||||||||||||||||| |||||||| |||  ||||  ||||  ||||||||    
T  32681101 aaatcagttagcttttggaaccctgcaattttgttctgtatgtataggaccctctaatttattatgagaacaatctaatgcaac--aagatgagtcaagt 32681004  T
Q  211 taaataatgaagatggaatttgtccttc 238  Q
    ||||||||||| ||||||||| ||||||    
T  32681003 taaataatgaatatggaatttctccttc 32680976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 223
Target Start/End: Original strand, 8524039 - 8524196
Alignment:
Q  66 gataacaaagaggaaggaattgttccatttaacaagttgtcatgtaaacttaaatcagttagcttttggaaccctataattttgttaggtaaaggaccct 165  Q
    |||||||| |||| ||||||||| ||||||| ||||||||||| ||| |  |||| |||||||||||| |  ||| || ||||||| ||||| ||||| |    
T  8524039 gataacaaggagggaggaattgtaccatttagcaagttgtcatttaatcgcaaattagttagcttttgaagacctgtagttttgttgggtaagggaccat 8524138  T
Q  166 ctaatttattattagaacaatataacaacttaagaccagtcaagttaaataatgaaga 223  Q
    |||||||||||| |||||||| |||      ||||  |||||||||||||||||||||    
T  8524139 ctaatttattatgagaacaatctaaagtaacaagatgagtcaagttaaataatgaaga 8524196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University