View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_high_14 (Length: 334)
Name: NF4689_high_14
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 23615113 - 23615420
Alignment:
| Q |
20 |
atacgtaaatcatgcatgacattttatcctttcttgtacgagagnnnnnnngaatgtagatgaatttggaccatttaacaaaatgaatatgaatgtttgg |
119 |
Q |
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| T |
23615113 |
atacgtaaatcatgcatgacattttatcctttcttgtacgagagaaaaaaagaatgtagatgaatttggaccatttaacaaaatgaatatgaatgtttgg |
23615212 |
T |
|
| Q |
120 |
tcctcttatctatctagcagacaataaatccttgaacattaaacacacagtgccaaacaatctatgatgatccatgtaatgtccactatgaaaccttgga |
219 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23615213 |
tcctcttatc----tagcagacaataaatacttgaacattaaacacacagtgccaaacaatctatgatgatccatgtaatgtccactatgaaaccttgga |
23615308 |
T |
|
| Q |
220 |
gttcacagtcacctccatcaagactgagaaaaatatagagccctagctatagctctagacgtttcaacttaatttcaattttcaagtttcaatttcaact |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23615309 |
gttcacagtcacctccatcaagactgagaaaaatatagagccctagctatagctctagacgtttcaacttaatttcaattttcaagtttcaatttcaact |
23615408 |
T |
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| Q |
320 |
tcatattcatat |
331 |
Q |
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|||||||||||| |
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| T |
23615409 |
tcatattcatat |
23615420 |
T |
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