View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_high_19 (Length: 273)
Name: NF4689_high_19
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 34313251 - 34313011
Alignment:
| Q |
17 |
tcaatgtaatttaggagagaagattctctcttgtaattggagagtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacatt |
116 |
Q |
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| T |
34313251 |
tcaatgtaacttagtggagcagattctcttctataattgaagagtccaataaaatctaagtcatttattttccatcactccatgcagggcc-tcaacgtt |
34313153 |
T |
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| Q |
117 |
gaagtaattgaatggtattaatgttcatatcactttcttcattaaaagtttcactagaagatatgcactcgtaacttagatactttgagcgtaaagatta |
216 |
Q |
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||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34313152 |
gaactaattgaatggtactaatgttcatatcactttctccattaaaagtttcactagaagatatgcactcgtaacttagatactttgagcttaaagatta |
34313053 |
T |
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| Q |
217 |
caatattataatttgtgacagttatttttcctattcaaaact |
258 |
Q |
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| T |
34313052 |
cagtattctaatttgtgacccttatttttcctattcaaaact |
34313011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 34605507 - 34605426
Alignment:
| Q |
59 |
agtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaatggtattaatgt |
140 |
Q |
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| T |
34605507 |
agtccaatgagatctaagtcacttatttttcactactccatacagaatcttcaatattgaagtaattgaatagtattgatgt |
34605426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 31228543 - 31228438
Alignment:
| Q |
35 |
gaagattctctcttgtaattggagagtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaatggtat |
134 |
Q |
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| T |
31228543 |
gaagattctctcttgtgattggagagtccagtgagatctaagccatttattttctactactccatgtggagccctcaacgttgaagtaattgaatggtat |
31228444 |
T |
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| Q |
135 |
taatgt |
140 |
Q |
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| T |
31228443 |
tgatgt |
31228438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 23861998 - 23862093
Alignment:
| Q |
38 |
gattctctcttgtaattggagagtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaatggtat |
134 |
Q |
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| T |
23861998 |
gattctctcctgtgatcggagagtccaatgagatctaagccatttattttctactactccatgt-gggccttcaatattgaagtaattgaatggtat |
23862093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 8533778 - 8533884
Alignment:
| Q |
37 |
agattctctcttgtaattggagagtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaatggtatta |
136 |
Q |
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|||||||||| ||||| | |||||| |||| | ||||||| ||||||||||||| |||||| || | || |||||||||||||||||||||||||||| |
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| T |
8533778 |
agattctctcatgtaacttgagagttcaatgagatctaagccatttattttccactactccgtgcggagccttcaacattgaagtaattgaatggtatta |
8533877 |
T |
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| Q |
137 |
atgttca |
143 |
Q |
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||||||| |
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| T |
8533878 |
atgttca |
8533884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 34639606 - 34639669
Alignment:
| Q |
72 |
ctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaatggtatt |
135 |
Q |
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||||| |||||||||| || ||||||||||||| ||| ||||||||| |||||||||||||||| |
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| T |
34639606 |
ctaagccatttatttttcactactccatgtagggcccacaacattgatgtaattgaatggtatt |
34639669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 16443120 - 16443009
Alignment:
| Q |
29 |
aggagagaagattctctcttgtaattggagagtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaa |
128 |
Q |
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||||||| | |||||||| ||| | |||||||||| | | |||||| ||||||||||||| |||| ||||| || |||||||||||||| ||||||| |
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| T |
16443120 |
aggagagcaaattctctcatgtgactggagagtccggtgatatctaaaccatttattttccactacttcatgtgagatcctcaacattgaagcaattgaa |
16443021 |
T |
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| Q |
129 |
tggtattaatgt |
140 |
Q |
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| T |
16443020 |
tgatattgatgt |
16443009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 7256842 - 7256763
Alignment:
| Q |
55 |
ggagagtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaatggtat |
134 |
Q |
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| T |
7256842 |
ggagagtccagtgagatctaagccatttattttccactacttcatgggatgccctcaacattgaagtaattgaatggtat |
7256763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 17177462 - 17177506
Alignment:
| Q |
39 |
attctctcttgtaattggagagtccaattaaatctaagtcattta |
83 |
Q |
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| T |
17177462 |
attctctcctgtgactggagagtccaatgaaatctaagtcattta |
17177506 |
T |
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