View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_high_29 (Length: 250)
Name: NF4689_high_29
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 2807139 - 2806930
Alignment:
| Q |
26 |
aaattcatccaactattcaataaagttttttccaactcttcattacaaaagaaaattaagtcaacaaaataaataaataaattattagcaagaattacct |
125 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2807139 |
aaattcatccaactattcaatacagttttttccaactcttcattacaaaagaaaattaagtcaacaaaataaataaataaattattagcaagaattacct |
2807040 |
T |
|
| Q |
126 |
caaattctctctcagcatattgacattcacagttcaacttcttgatggcaacatctaaattatcatccaacctagccttgtaaacacatccaaaaccacc |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2807039 |
caaattctctctcagcatattgacattcacagttcaacttcttgatggcaacatctaaattatcatccaacctagccttgtaaacacatccaaaaccacc |
2806940 |
T |
|
| Q |
226 |
ctcacctatg |
235 |
Q |
| |
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|||||||||| |
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| T |
2806939 |
ctcacctatg |
2806930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 4270795 - 4270586
Alignment:
| Q |
26 |
aaattcatccaactattcaataaagttttttccaactcttcattacaaaagaaaattaagtcaacaaaataaataaataaattattagcaagaattacct |
125 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4270795 |
aaattcatccaactattcaatacagttttttccaactcttcattaaaaaagaaaattaagtcaacaaaataaataaataaattattagcaagaattacct |
4270696 |
T |
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| Q |
126 |
caaattctctctcagcatattgacattcacagttcaacttcttgatggcaacatctaaattatcatccaacctagccttgtaaacacatccaaaaccacc |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4270695 |
caaattctctctcagcatattgacattcacagttcaacttcttgatggcaacatctaaattatcatccaacctagccttgtaaacacatccaaaaccacc |
4270596 |
T |
|
| Q |
226 |
ctcacctatg |
235 |
Q |
| |
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|||||||||| |
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| T |
4270595 |
ctcacctatg |
4270586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 49124920 - 49124981
Alignment:
| Q |
164 |
ttcttgatggcaacatctaaattatcatccaacctagccttgtaaacacatccaaaaccacc |
225 |
Q |
| |
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||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||| |
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| T |
49124920 |
ttcttgacagcaacatccaaattatcatcaaattgtgccttgtaaacacatccaaaaccacc |
49124981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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