View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4689_high_31 (Length: 250)

Name: NF4689_high_31
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4689_high_31
NF4689_high_31
[»] scaffold0186 (1 HSPs)
scaffold0186 (5-235)||(22639-22869)
[»] chr8 (21 HSPs)
chr8 (12-235)||(41570359-41570585)
chr8 (83-235)||(18881850-18882001)
chr8 (9-171)||(13541418-13541581)
chr8 (9-171)||(13682892-13683055)
chr8 (14-198)||(38172759-38172948)
chr8 (3-235)||(38699685-38699917)
chr8 (10-155)||(4072227-4072373)
chr8 (1-216)||(43115133-43115347)
chr8 (10-155)||(21441593-21441739)
chr8 (9-195)||(40118063-40118247)
chr8 (10-155)||(41323181-41323327)
chr8 (91-235)||(12491566-12491711)
chr8 (83-211)||(1233551-1233675)
chr8 (83-211)||(13640907-13641031)
chr8 (118-211)||(13741319-13741409)
chr8 (1-95)||(6115005-6115100)
chr8 (1-106)||(32415828-32415934)
chr8 (127-235)||(6114891-6114998)
chr8 (5-77)||(18881430-18881503)
chr8 (149-209)||(25337926-25337985)
chr8 (69-99)||(18881806-18881836)
[»] chr4 (17 HSPs)
chr4 (9-238)||(21790691-21790922)
chr4 (1-235)||(8745635-8745869)
chr4 (4-169)||(48841103-48841262)
chr4 (1-169)||(48861918-48862087)
chr4 (116-235)||(6016763-6016882)
chr4 (14-232)||(54165895-54166109)
chr4 (1-235)||(17815906-17816135)
chr4 (117-235)||(22786054-22786172)
chr4 (10-155)||(43892522-43892668)
chr4 (117-235)||(2407181-2407300)
chr4 (14-168)||(52628216-52628371)
chr4 (83-199)||(46693934-46694050)
chr4 (149-235)||(11950600-11950686)
chr4 (121-210)||(5476358-5476447)
chr4 (127-211)||(16608373-16608454)
chr4 (127-170)||(8762618-8762661)
chr4 (121-209)||(42318948-42319035)
[»] chr5 (15 HSPs)
chr5 (1-235)||(16908575-16908808)
chr5 (1-235)||(41639989-41640223)
chr5 (51-199)||(40360994-40361140)
chr5 (10-155)||(17768976-17769122)
chr5 (10-155)||(13517498-13517644)
chr5 (57-169)||(34034071-34034183)
chr5 (91-223)||(40528123-40528255)
chr5 (127-227)||(7008942-7009042)
chr5 (62-194)||(19948812-19948944)
chr5 (54-216)||(17695850-17696012)
chr5 (83-235)||(6536537-6536689)
chr5 (135-235)||(42353206-42353304)
chr5 (121-209)||(14521679-14521766)
chr5 (127-210)||(3498434-3498517)
chr5 (1-46)||(34033998-34034043)
[»] chr1 (26 HSPs)
chr1 (1-235)||(47367789-47368025)
chr1 (1-235)||(11142601-11142835)
chr1 (1-235)||(44961379-44961613)
chr1 (1-235)||(1600504-1600741)
chr1 (1-169)||(23614560-23614729)
chr1 (9-198)||(19313318-19313507)
chr1 (1-216)||(10406128-10406341)
chr1 (1-217)||(10177826-10178042)
chr1 (10-155)||(15757676-15757822)
chr1 (91-235)||(30950761-30950906)
chr1 (10-155)||(10620063-10620209)
chr1 (9-235)||(52110950-52111159)
chr1 (91-223)||(29799018-29799150)
chr1 (118-209)||(24134376-24134466)
chr1 (118-211)||(27696493-27696583)
chr1 (111-170)||(28403126-28403185)
chr1 (121-210)||(40268669-40268759)
chr1 (130-198)||(33240850-33240918)
chr1 (135-235)||(21972478-21972576)
chr1 (135-235)||(46515655-46515753)
chr1 (127-207)||(29358495-29358572)
chr1 (127-209)||(10989196-10989278)
chr1 (51-152)||(8262067-8262168)
chr1 (133-202)||(33322903-33322972)
chr1 (135-209)||(5184669-5184741)
chr1 (1-94)||(33241370-33241463)
[»] chr2 (10 HSPs)
chr2 (1-235)||(4435183-4435417)
chr2 (69-235)||(42799108-42799275)
chr2 (117-235)||(45655899-45656017)
chr2 (51-199)||(21746137-21746285)
chr2 (91-235)||(16546354-16546499)
chr2 (116-228)||(39070154-39070267)
chr2 (133-235)||(14802671-14802774)
chr2 (51-106)||(26180634-26180689)
chr2 (121-211)||(35524657-35524747)
chr2 (91-228)||(37614591-37614731)
[»] chr7 (25 HSPs)
chr7 (67-232)||(34659370-34659535)
chr7 (10-217)||(48609044-48609251)
chr7 (1-235)||(29715766-29716000)
chr7 (16-169)||(758835-758989)
chr7 (16-169)||(46211663-46211817)
chr7 (127-235)||(25592168-25592276)
chr7 (10-155)||(39719879-39720025)
chr7 (91-235)||(13465458-13465603)
chr7 (20-169)||(83617-83768)
chr7 (91-235)||(28491315-28491460)
chr7 (9-176)||(37202740-37202908)
chr7 (137-217)||(4677983-4678061)
chr7 (9-202)||(17949064-17949259)
chr7 (127-228)||(14047053-14047153)
chr7 (127-228)||(14357083-14357183)
chr7 (118-211)||(45855585-45855676)
chr7 (1-95)||(25592066-25592161)
chr7 (133-211)||(40253593-40253671)
chr7 (135-209)||(20926806-20926878)
chr7 (118-209)||(37049134-37049224)
chr7 (129-176)||(25439575-25439623)
chr7 (1-49)||(27097126-27097174)
chr7 (1-49)||(27181129-27181177)
chr7 (136-235)||(37003822-37003919)
chr7 (1-49)||(37712950-37712998)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-235)||(292189-292423)
[»] chr3 (21 HSPs)
chr3 (1-169)||(16152221-16152390)
chr3 (10-217)||(17652926-17653133)
chr3 (117-235)||(20843140-20843258)
chr3 (127-235)||(52403230-52403338)
chr3 (10-155)||(21295932-21296078)
chr3 (10-155)||(46823804-46823950)
chr3 (72-232)||(29648402-29648564)
chr3 (127-217)||(38171472-38171566)
chr3 (91-235)||(40763813-40763958)
chr3 (1-106)||(11027932-11028038)
chr3 (127-235)||(11906547-11906655)
chr3 (1-95)||(52403345-52403439)
chr3 (127-211)||(19795664-19795745)
chr3 (118-212)||(37175495-37175588)
chr3 (118-211)||(35062063-35062153)
chr3 (136-217)||(40785772-40785851)
chr3 (91-235)||(3458029-3458173)
chr3 (130-209)||(35106470-35106547)
chr3 (1-95)||(11906662-11906756)
chr3 (135-209)||(36312269-36312341)
chr3 (1-49)||(29123504-29123552)
[»] chr6 (16 HSPs)
chr6 (10-169)||(34729775-34729935)
chr6 (16-169)||(29363531-29363685)
chr6 (1-205)||(29486386-29486588)
chr6 (127-235)||(21216444-21216552)
chr6 (127-235)||(22956396-22956504)
chr6 (127-235)||(23831888-23831996)
chr6 (91-235)||(1780595-1780740)
chr6 (51-175)||(24428780-24428907)
chr6 (127-235)||(31216241-31216346)
chr6 (1-95)||(22956511-22956606)
chr6 (1-95)||(23831786-23831881)
chr6 (127-211)||(8559888-8559969)
chr6 (135-217)||(903993-904073)
chr6 (173-211)||(33224841-33224879)
chr6 (1-95)||(31216353-31216449)
chr6 (9-45)||(27673985-27674021)
[»] scaffold0481 (1 HSPs)
scaffold0481 (1-163)||(6613-6773)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-106)||(6960-7066)
[»] scaffold0002 (1 HSPs)
scaffold0002 (69-186)||(428333-428449)
[»] scaffold1554 (1 HSPs)
scaffold1554 (1-93)||(720-812)
[»] scaffold0004 (1 HSPs)
scaffold0004 (118-211)||(212060-212150)


Alignment Details
Target: scaffold0186 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 22639 - 22869
Alignment:
Q  5 attcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatatta 103  Q
    ||||||||||||||||||| |||||||||| ||||||||||| ||  |||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  22639 attcatttgtattggtttggaacttccggtttcaataacaacaatagagaaaactttttcaataataaaaattatcaagacaatagtcataaacatatta 22738  T
Q  104 aataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttc 203  Q
    ||| || | ||  ||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  22739 aatgggcattgaatttcttgcaaataacctatttgtttacattggaaaaaacattattaatctattttgtaaacaatcaattatgaataaaattgacttc 22838  T
Q  204 ttaaaacacattttaaccaacttttctaaata 235  Q
    || |||  ||||||  |||| |||||||||||    
T  22839 ttgaaa-tcattttgtccaaattttctaaata 22869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 41570359 - 41570585
Alignment:
Q  12 tgtattggtttgaaacttccggtctcaataacaactatt---agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 108  Q
    |||||||||||| ||||| |||||| | ||||||||||    |||||||||||| || ||||| ||||||||||  ||||||||||||||||||||||      
T  41570359 tgtattggtttggaactttcggtcttattaacaactatatagagaaaactttttcaacaataacaattatcaagtaaatagtcataaacatattaaatga 41570458  T
Q  109 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggat-aaaattgacttcttaa 207  Q
    |||||| |||||||||| ||||||||||||||||| || ||||| |||  |||||||||||||||||| |||||||||||||| ||||||| |||||| |    
T  41570459 gtaatgagtttcttgcaaataacctatttgtttacctt-aaaaaaacaacattaatctattttgtaaacaatcaattatggataaaaattggcttcttga 41570557  T
Q  208 aacacattttaaccaacttttctaaata 235  Q
    ||| |||||   ||||||||||||||||    
T  41570558 aacgcatttagtccaacttttctaaata 41570585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 83 - 235
Target Start/End: Original strand, 18881850 - 18882001
Alignment:
Q  83 acaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatca 182  Q
    |||||||||||||||||||||||| || |||| |||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  18881850 acaatagtcataaacatattaaatgggcaatgagtttcttgcaaataacctatttgtttacattggaaaaaacattattaatctattttgtaaacaatca 18881949  T
Q  183 attatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 235  Q
    |||||||||||||||| |||||| |||  ||||||  |||| |||||||||||    
T  18881950 attatggataaaattgccttcttgaaa-tcattttgtccaaattttctaaata 18882001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 13541581 - 13541418
Alignment:
Q  9 atttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaata 107  Q
    |||||||||||||||| |||| |||||| ||||||||| ||  ||||| |||||| || |||||||||||||||||||||||||||| | | |||||||     
T  13541581 atttgtattggtttgatactttcggtcttaataacaacaatagagaaatctttttcaacaataaaaattatcaagacaatagtcatagataaattaaatg 13541482  T
Q  108 ggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatttt 171  Q
    |  |||| |||||||||| ||||||||||| ||||||||  |||||| ||||||||||||||||    
T  13541481 gacaatgagtttcttgcaaataacctatttatttacatttgaaaagatattattaatctatttt 13541418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 13682892 - 13683055
Alignment:
Q  9 atttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaata 107  Q
    |||||||||||||||| |||| |||||| ||||||||| ||  ||||| |||||| || |||||||||||||||||||||||||||| | | |||||||     
T  13682892 atttgtattggtttgatactttcggtcttaataacaacaatagagaaatctttttcaacaataaaaattatcaagacaatagtcatagataaattaaatg 13682991  T
Q  108 ggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatttt 171  Q
    |  |||| |||||||||| ||||||||||| ||||||||  |||||| ||||||||||||||||    
T  13682992 gacaatgagtttcttgcaaataacctatttatttacatttgaaaagatattattaatctatttt 13683055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 38172948 - 38172759
Alignment:
Q  14 tattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaa 112  Q
    ||||||||||| |||| | |||| |||||||| |||  |||||||||| | || |||||||||||||||||||||||||||||||| |||||||    ||    
T  38172948 tattggtttgatactttcagtcttaataacaattatagagaaaactttgtcaacaataaaaattatcaagacaatagtcataaacaaattaaatgaacaa 38172849  T
Q  113 tgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatc----tattttgtaaataatcaattatggataaaattg 198  Q
    || |||| ||||| |||||||||| |||||||||| | || ||||||||||||    ||||| ||||| | |||||||||||||||||||    
T  38172848 tgagtttattgcaaataacctattagtttacattggagaatacattattaatctatatatttagtaaacactcaattatggataaaattg 38172759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 38699917 - 38699685
Alignment:
Q  3 agattcatttgtattggtttgaaacttccggtctcaataacaactattaga-aaacttttttaaa-aataaaaattatcaagacaatagtcataaacata 100  Q
    ||||| ||||||||| |||||| |||  || ||||||||||||| | |||| |||| ||||| || |||||||||||||||||||||||||||  ||| |    
T  38699917 agatttatttgtatttgtttgatactctcgatctcaataacaac-agtagagaaacatttttcaacaataaaaattatcaagacaatagtcatggacaaa 38699819  T
Q  101 ttaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgac 200  Q
    |||||| |  | || |||||||||| ||||||||||| ||||||||  ||||||||||||||||||||| | |||| | || ||||| ||| ||||||      
T  38699818 ttaaatggagagtgagtttcttgcaaataacctatttatttacatttgaaaagacattattaatctattat-taaacagtctattattgatgaaattggg 38699720  T
Q  201 ttcttaaaacacattttaaccaacttttctaaata 235  Q
    ||||| |||| ||||||  ||||| ||||||||||    
T  38699719 ttcttgaaacgcattttgcccaacgtttctaaata 38699685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 155
Target Start/End: Complemental strand, 4072373 - 4072227
Alignment:
Q  10 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 108  Q
    ||||||||||||||| |||| | |||||||||||||| || | ||||||||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  4072373 tttgtattggtttgatactttccgtctcaataacaacaataaagaaaactttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 4072274  T
Q  109 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 155  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  4072273 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 4072227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 43115133 - 43115347
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaa-aataaaaattatcaagacaatagtcataaacat 99  Q
    ||||||| ||||||||| |||||| ||| ||| ||||||||||||| || ||| ||||||||| || |||||||||||||||||||||||||||  | |     
T  43115133 atagatttatttgtatttgtttgatactcccgatctcaataacaacaat-agagaacttttttcaacaataaaaattatcaagacaatagtcattgaaaa 43115231  T
Q  100 attaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattga 199  Q
    | ||||| |  | || |||||||||| ||||| ||||| ||||||||  |||| |||||||||||||||| | |||| | |||||||| ||| ||||||     
T  43115232 actaaatggacagtgagtttcttgcaaataacatatttatttacatttgaaaaaacattattaatctattat-taaacagtcaattattgatgaaattgg 43115330  T
Q  200 cttcttaaaacacattt 216  Q
     ||||| |||| |||||    
T  43115331 gttcttgaaacgcattt 43115347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 155
Target Start/End: Complemental strand, 21441739 - 21441593
Alignment:
Q  10 tttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 108  Q
    ||||||||||||||| |||||| |||||||||||||| ||  ||||| |||||| || ||||||||| ||||| |||||||||||| ||| |||||||      
T  21441739 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaaaacaatagtcatagacaaattaaatgt 21441640  T
Q  109 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 155  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  21441639 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 21441593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 40118063 - 40118247
Alignment:
Q  9 atttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 108  Q
    |||| ||||||||||| ||||||    |||||||||| ||| |||||||||||| || ||||||||||||||||| |||||||||||||| ||||||| |    
T  40118063 atttatattggtttgatacttccaaattcaataacaattat-agaaaactttttcaacaataaaaattatcaagataatagtcataaacaaattaaatgg 40118161  T
Q  109 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaa 195  Q
      ||||  ||| ||||| |||| ||||| |||||||||| |||| | ||||||||||||  | ||||| | ||||||||||| ||||    
T  40118162 acaatgaatttattgcaaataatctattagtttacattg-aaaatatattattaatctacctagtaaacactcaattatggaaaaaa 40118247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 155
Target Start/End: Complemental strand, 41323327 - 41323181
Alignment:
Q  10 tttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaa-aataaaaattatcaagacaatagtcataaacatattaaatag 108  Q
    ||||||||||||||| |||||| |||||||||||||| || |  |||| ||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  41323327 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacatttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 41323228  T
Q  109 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 155  Q
      |||| |||||||||| |||| |||||| ||||||||  |||||||    
T  41323227 acaatgagtttcttgcaaataaactatttatttacatttgaaaagac 41323181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 12491566 - 12491711
Alignment:
Q  91 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 189  Q
    |||||||| ||||||| |  | || |||||||||| ||||||||||||||| |||||| |||| ||||||||||||||||| |||||   ||||||||||    
T  12491566 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaaaacattattaatctatttagtaaacggtcaattatgg 12491665  T
Q  190 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 235  Q
    ||| |||||  ||||| |||  |||||||  |||||||| ||||||    
T  12491666 atacaattggtttcttgaaatgcattttacacaacttttttaaata 12491711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 211
Target Start/End: Complemental strand, 1233675 - 1233551
Alignment:
Q  83 acaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatca 182  Q
    |||||||| | ||||| ||||||||| ||||  ||| ||| || |||||||||| |||||||||||||| ||||||| |||||| || | |||| |||||    
T  1233675 acaatagtgagaaacaaattaaatagataataagtt-cttacaaataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatca 1233580  T
Q  183 attatggataaaattgacttcttaaaaca 211  Q
    |||||||||||||||||||||||||||||    
T  1233579 attatggataaaattgacttcttaaaaca 1233551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 211
Target Start/End: Complemental strand, 13641031 - 13640907
Alignment:
Q  83 acaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatca 182  Q
    |||||||| | ||||| ||||||||| ||||  ||| ||| || |||||||||| |||||||||||||| ||||||| |||||| || | |||| |||||    
T  13641031 acaatagtgagaaacaaattaaatagataataagtt-cttacaaataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatca 13640936  T
Q  183 attatggataaaattgacttcttaaaaca 211  Q
    |||||||||||||||||||||||||||||    
T  13640935 attatggataaaattgacttcttaaaaca 13640907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 13741409 - 13741319
Alignment:
Q  118 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 211  Q
    ||||| || |||||||||| |||||||||||||| ||||||| |||||| || | |||| ||||||||||||||||||||||||||||||||||    
T  13741409 ttcttacaaataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatcaattatggataaaattgacttcttaaaaca 13741319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 6115100 - 6115005
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataa 95  Q
    ||||||| |||||||||||||||  ||||| | |||||||||||| |||  ||| ||||||||||| |||||||| |||||||||| |||||||||    
T  6115100 atagatttatttgtattggtttggtacttctgatctcaataacaattatagagagaacttttttaacaataaaaactatcaagacagtagtcataa 6115005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 32415828 - 32415934
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacat 99  Q
    ||||||| |||| ||||||||||| |||||||||||||||||||| ||| |||||||| ||||    | ||| |||||| ||||||||| |||||||||     
T  32415828 atagatttatttatattggtttgatacttccggtctcaataacaattatatagaaaaccttttcggtagtaacaattattaagacaataatcataaacaa 32415927  T
Q  100 attaaat 106  Q
    |||||||    
T  32415928 attaaat 32415934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 6114998 - 6114891
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 226  Q
    |||| ||||| || ||||||| |||| | |||||||||||||||| |||||| ||  |||||||||||||||  ||||| |||||||||||| ||| |||    
T  6114998 ataatctattcgtgtacattggaaaatatattattaatctattttataaatagtcctttatggataaaattg-gttcttgaaacacattttatccagctt 6114900  T
Q  227 ttctaaata 235  Q
    || ||||||    
T  6114899 ttttaaata 6114891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 18881430 - 18881503
Alignment:
Q  5 attcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaatta 77  Q
    |||||||||||||| |||| |||||||||| ||||||||||| ||  |||||||||||| || |||||||||||    
T  18881430 attcatttgtattgatttggaacttccggtttcaataacaacgatagagaaaactttttcaataataaaaatta 18881503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 25337985 - 25337926
Alignment:
Q  149 aaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 209  Q
    ||||||||||| |||||| || | |||| ||||||||||||||||||||||||||||||||    
T  25337985 aaaagacattagtaatcttttat-taaacaatcaattatggataaaattgacttcttaaaa 25337926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 99
Target Start/End: Original strand, 18881806 - 18881836
Alignment:
Q  69 taaaaattatcaagacaatagtcataaacat 99  Q
    |||||||||||||||||||||||||||||||    
T  18881806 taaaaattatcaagacaatagtcataaacat 18881836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 21790691 - 21790922
Alignment:
Q  9 atttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaata 107  Q
    |||| ||||||||||| |||||||||||||||| ||| |||  |||||||||||| ||   |||||||||| ||||| ||||||||||||| || ||||     
T  21790691 atttatattggtttgatacttccggtctcaatagcaattatagagaaaactttttaaacggtaaaaattattaagactatagtcataaacaaataaaatg 21790790  T
Q  108 ggtaatgcgtttctt--gcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttctt 205  Q
    |  |||| |||| ||  ||| ||||||||||| ||||| ||| ||||||||||||||||||| || ||||| ||||||||||||| ||||||||||||||    
T  21790791 gacaatgagttttttttgcaaataacctatttatttac-ttggaaaagacattattaatctagttagtaaacaatcaattatggacaaaattgacttctt 21790889  T
Q  206 aaaacacattttaaccaacttttctaaatacct 238  Q
    ||||  ||||||| |||||||||||||||||||    
T  21790890 aaaatgcattttacccaacttttctaaatacct 21790922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 8745869 - 8745635
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacat 99  Q
    ||||||| |||||||||||||||| ||| ||| ||||||||||||| ||  ||||  |||||| || |||||||||||||||||||||| ||||| |||     
T  8745869 atagatttatttgtattggtttgatactcccgatctcaataacaacaatagagaagcctttttcaacaataaaaattatcaagacaatattcatagacaa 8745770  T
Q  100 attaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattga 199  Q
    ||||||| |  |||| ||||||| |  ||||||||||| ||||||||  ||||||||||||||||||||| | ||||||  ||||||| ||| ||||||     
T  8745769 attaaatggacaatgagtttcttacgaataacctatttatttacatttgaaaagacattattaatctattat-taaataggcaattattgatgaaattgg 8745671  T
Q  200 cttcttaaaacacattttaaccaacttttctaaata 235  Q
     ||||  |||||||||||  ||||| ||||||||||    
T  8745670 gttctcgaaacacattttgcccaacgtttctaaata 8745635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 169
Target Start/End: Original strand, 48841103 - 48841262
Alignment:
Q  4 gattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatatta 103  Q
    |||| |||||||||||||||| ||||||| ||||||||||||     ||||| |||||| || ||||||||||||||||||||  |||||| ||| ||||    
T  48841103 gatttatttgtattggtttgatacttccgatctcaataacaag----agaaacctttttcaacaataaaaattatcaagacaa--gtcatagacaaatta 48841196  T
Q  104 aataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 169  Q
    ||| | ||||| |||||||||| ||||||||||| ||||||||  |||||||||||||||||||||    
T  48841197 aatggataatgggtttcttgcaaataacctatttatttacatttgaaaagacattattaatctatt 48841262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 48861918 - 48862087
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacat 99  Q
    ||||||| |||||||||||||||| | || |||||||||||||||| || | |||| |||||| || || |||||||||||||||||||||| || |||     
T  48861918 atagatttatttgtattggtttgatattttcggtctcaataacaacaataaagaaacctttttcaacaacaaaaattatcaagacaatagtcgtagacaa 48862017  T
Q  100 attaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 169  Q
    |||||| ||  |||| |||||||||| ||||| ||||| |||||||| |||||| |||||||||||||||    
T  48862018 attaaacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtcattattaatctatt 48862087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 6016882 - 6016763
Alignment:
Q  116 gtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacatt 215  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||||||||||||| ||| || |||  ||||    
T  6016882 gtttcttgcaaataacctatttgtttacattgaaaaagacattattaatctatttagtaaacggtcaattatggataaaattggcttattgaaatgcatt 6016783  T
Q  216 ttaaccaacttttctaaata 235  Q
    ||| ||||||||| ||||||    
T  6016782 ttacccaacttttttaaata 6016763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 54166109 - 54165895
Alignment:
Q  14 tattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaa 112  Q
    ||||||||||| |||| | || |||||||||| |||  | |||||||||| || |||||||||||||||||||||| ||||||| | ||||||| |  ||    
T  54166109 tattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaataaattaaatggacaa 54166010  T
Q  113 tgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacac 212  Q
    || |||| ||||| |||||||||| ||||||||||||||| ||||||||||||||     |||    ||||||||||| |||||||| ||||| ||| ||    
T  54166009 tgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta-----taatcgctcaattatggaaaaaattgatttcttgaaatac 54165915  T
Q  213 attttaaccaacttttctaa 232  Q
    |||||  |||||||||||||    
T  54165914 attttgtccaacttttctaa 54165895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 17816135 - 17815906
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacat 99  Q
    ||||||| || ||||||||||||  ||||||  ||| ||||||||||||  ||||||||| || || ||||||||||||||||||| ||||             
T  17816135 atagatttatatgtattggtttggtacttccaatcttaataacaactatagagaaaacttattcaacaataaaaattatcaagacagtagt--------- 17816045  T
Q  100 attaaataggtaatgcgtttcttgcaga-taac---ctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaa 195  Q
    ||| ||| || |||| |||||||||| | ||||   ||||||||||||||| ||||| ||||||||||||||||||||||| |||||| |||||||||||    
T  17816044 attcaatgggcaatgagtttcttgcaaaataacttactatttgtttacattaaaaaa-acattattaatctattttgtaaacaatcaactatggataaaa 17815946  T
Q  196 ttgacttcttaaaacacattttaaccaacttttctaaata 235  Q
    |||||||||| |||| ||||||  ||||||||| ||||||    
T  17815945 ttgacttctttaaacgcattttgcccaacttttttaaata 17815906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 22786054 - 22786172
Alignment:
Q  117 tttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattt 216  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||   || |||||||||||||||| |||||| |||  |||||    
T  22786054 tttcttgcaaataacctatttgtttacattggaaaagacattattaatctatttagtaaacggtcgattatggataaaattggcttcttgaaatgcattt 22786153  T
Q  217 taaccaacttttctaaata 235  Q
    || ||||||||| ||||||    
T  22786154 tacccaacttttttaaata 22786172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 155
Target Start/End: Complemental strand, 43892668 - 43892522
Alignment:
Q  10 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 108  Q
    ||||||||||||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  43892668 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaataatcaagacaatagtcatagacaaattaaatgt 43892569  T
Q  109 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 155  Q
    | |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  43892568 gcaatgagtttcttgcaaataacctatttatttacatttgaaaagac 43892522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 2407181 - 2407300
Alignment:
Q  117 tttcttgcagataacctatttgtttacattg-aaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacatt 215  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||   |||||||| ||||||||||||||||| |||  ||||    
T  2407181 tttcttgcaaataacctatttgtttacattggaaaaagacattattaatctatttagtaaacggtcaattattgataaaattgacttcttgaaatgcatt 2407280  T
Q  216 ttaaccaacttttctaaata 235  Q
    |||  |||||||| ||||||    
T  2407281 ttactcaacttttttaaata 2407300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 168
Target Start/End: Original strand, 52628216 - 52628371
Alignment:
Q  14 tattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaa 112  Q
    ||||||||||| |||| | |||| |||||||| |||  |||||||||| | || |||||||||||||||||||||||||||||| | |||||||    ||    
T  52628216 tattggtttgatactttcagtcttaataacaattatagagaaaactttgtcaacaataaaaattatcaagacaatagtcataaataaattaaatgaacaa 52628315  T
Q  113 tgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctat 168  Q
    || |||| ||||| |||||||||| |||||||||| |||| | |||||||||||||    
T  52628316 tgagtttattgcaaataacctattagtttacattggaaaatatattattaatctat 52628371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 46694050 - 46693934
Alignment:
Q  83 acaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatca 182  Q
    |||||||||||||||| |||||| |  ||||| |||||||||| || |  ||||| |||| |||||||| ||| ||||||||||||||| || | |||||    
T  46694050 acaatagtcataaacaaattaaacaaataatgagtttcttgcaaatgaattatttatttatattgaaaaggacgttattaatctattttatatacaatca 46693951  T
Q  183 attatggataaaattga 199  Q
    |||||  ||||||||||    
T  46693950 attataaataaaattga 46693934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 11950600 - 11950686
Alignment:
Q  149 aaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 235  Q
    ||||||||| |||||||||||||||||||| ||| ||||| || |||||| |||||| || || |||||  ||||||||||||||||    
T  11950600 aaaagacatcattaatctattttgtaaatagtcatttatgaattaaattggcttcttgaagcagattttgtccaacttttctaaata 11950686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 5476447 - 5476358
Alignment:
Q  121 ttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaac 210  Q
    ||||| ||||| |||||||||||||||||||||||||||||| | ||||| |||   |||||||| || | |||||| |||| |||||||    
T  5476447 ttgcaaataacttatttgtttacattgaaaaagacattattagtgtatttagtatgcaatcaattctgaagaaaattaactttttaaaac 5476358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 16608454 - 16608373
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 211  Q
    |||||||||| |||||||||||||| ||||||| ||| || || | |||| ||| ||||||||||||||||||||||||||||||    
T  16608454 ataacctatt-gtttacattgaaaa-gacattagtaaccttttat-taaacaatgaattatggataaaattgacttcttaaaaca 16608373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 8762661 - 8762618
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattt 170  Q
    ||||| |||||||||||||||||||||||||||||| |||||||    
T  8762661 ataacttatttgtttacattgaaaaagacattattagtctattt 8762618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 209
Target Start/End: Complemental strand, 42319035 - 42318948
Alignment:
Q  121 ttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 209  Q
    ||||| ||||| ||||| ||||||||||||  || ||||||||||||||| ||||| |   |||||||||||||| |||||| ||||||    
T  42319035 ttgcaaataacatatttatttacattgaaag-gatattattaatctatttagtaaacataaaattatggataaaagtgactttttaaaa 42318948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 16908808 - 16908575
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacat 99  Q
    |||||||  ||| ||||||||||| |||||||||||||||||||| |||  |||||||||||  ||  ||||||||||| ||||||||||| ||||| |     
T  16908808 atagatttgtttatattggtttgatacttccggtctcaataacaattatagagaaaacttttc-aacgataaaaattattaagacaatagttataaataa 16908710  T
Q  100 attaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattga 199  Q
    ||||||| |  |||  ||||||| ||  ||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||||||||||||| |||     
T  16908709 attaaatggacaata-gtttctttcaagtaacctatttgtttacattgaaaaatacattattaatctatttagtaaacagtcaattatggataaatttgg 16908611  T
Q  200 cttcttaaaacacattttaaccaacttttctaaata 235  Q
    ||| || |||  ||||||| ||||||||||||||||    
T  16908610 ctttttgaaatgcattttacccaacttttctaaata 16908575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 41640223 - 41639989
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacat 99  Q
    ||||||| |||||||||||||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| ||||||| |||||||||| |||     
T  41640223 atagatttatttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagaaaatagtcatagacaa 41640124  T
Q  100 attaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattga 199  Q
    |||||||    |||| |||||||||| ||||| ||||| ||||||||  ||||||||||||||||||||| | |||| || ||||||| ||| |||||||    
T  41640123 attaaatgtacaatgagtttcttgcaaataacatatttatttacatttgaaaagacattattaatctattat-taaacaagcaattattgatgaaattga 41640025  T
Q  200 cttcttaaaacacattttaaccaacttttctaaata 235  Q
     ||||| ||||  |||||  ||||| ||||||||||    
T  41640024 gttcttgaaacgtattttgtccaacgtttctaaata 41639989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 199
Target Start/End: Complemental strand, 40361140 - 40360994
Alignment:
Q  51 agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaa 150  Q
    |||||||||||| || || |||||||||||| | ||||||||   ||  |||||||||| |||| |||||||||| |||||||||||||||| ||   ||    
T  40361140 agaaaactttttcaacaacaaaaattatcaacaaaatagtcagggac--attaaataggaaatgagtttcttgcaaataacctatttgtttagatcataa 40361043  T
Q  151 aagacattattaatctattttgtaaataatcaattatggataaaattga 199  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||    
T  40361042 aagacattattaatctattttgtaaacagtcaattatggataaaattga 40360994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 155
Target Start/End: Complemental strand, 17769122 - 17768976
Alignment:
Q  10 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 108  Q
    ||||||||||||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  17769122 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 17769023  T
Q  109 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 155  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  17769022 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 17768976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 13517498 - 13517644
Alignment:
Q  10 tttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 108  Q
    ||||||||||||||| |||||| |||||||||||||| ||  |||||  ||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  13517498 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacatttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 13517597  T
Q  109 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 155  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  13517598 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 13517644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 34034071 - 34034183
Alignment:
Q  57 cttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagaca 156  Q
    |||||| || ||||||||||||||||| |||||||||| ||| ||||||| |  |||| |||||||||| ||||| ||||| ||||||||  ||||||||    
T  34034071 ctttttcaacaataaaaattatcaagagaatagtcatagacaaattaaatggacaatgagtttcttgcaaataacttatttatttacatttgaaaagaca 34034170  T
Q  157 ttattaatctatt 169  Q
    |||||||||||||    
T  34034171 ttattaatctatt 34034183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 40528255 - 40528123
Alignment:
Q  91 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatgga 190  Q
    |||||||| ||||| | | || || ||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||||  ||||| ||| ||    
T  40528255 cataaacaaattaagtggatattgagtttcttacaaataacctatttgtttacattgaaaaagacattattaatcaatttagtaaacgatcaaatataga 40528156  T
Q  191 taaaattgacttcttaaaacacattttaaccaa 223  Q
    |||||||| |||||| |||  ||||||| ||||    
T  40528155 taaaattggcttcttgaaatgcattttacccaa 40528123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 7008942 - 7009042
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 226  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||  |||||||||||||||  ||||| ||||| |||||  |||||||    
T  7008942 ataacctatttgtgtacattggaaaaggcattattaatctattttgtaaacaatcgtttatggataaaattggtttcttgaaacagattttgtccaactt 7009041  T
Q  227 t 227  Q
    |    
T  7009042 t 7009042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 19948944 - 19948812
Alignment:
Q  62 ttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattatt 161  Q
    |||| ||| ||||||||||||||||||||||||||| |||||||| |  ||||  ||||||||| |||| ||| |||||||||||| | || | ||||||    
T  19948944 ttaacaattaaaattatcaagacaatagtcataaacctattaaatggacaatgaatttcttgcaaataatctagttgtttacattggagaaaatattatt 19948845  T
Q  162 aatctattttgtaaataatcaattatggataaa 194  Q
    | || ||||||||||  || |||||||||||||    
T  19948844 attccattttgtaaacgattaattatggataaa 19948812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 216
Target Start/End: Complemental strand, 17696012 - 17695850
Alignment:
Q  54 aaacttttttaaa-aataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaa 152  Q
    |||||||||| || |||||||||||||||||||||||||||  ||| | ||||| |  | || |||||||||| ||||| ||||| ||||||||  ||||    
T  17696012 aaacttttttcaacaataaaaattatcaagacaatagtcattgacaaactaaatggacagtgagtttcttgcaaataacttatttatttacatttgaaaa 17695913  T
Q  153 gacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattt 216  Q
     |||||||||||||||| | |||| | |||||||| ||| ||||||  ||||| |||| |||||    
T  17695912 aacattattaatctattat-taaacagtcaattattgatgaaattgggttcttgaaacgcattt 17695850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 235
Target Start/End: Complemental strand, 6536689 - 6536537
Alignment:
Q  83 acaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatca 182  Q
    |||||||||  ||||| |||||| |  ||| | |||||||||| || || |||||||||| ||||||||  |||||| || |||||||| || | |||||    
T  6536689 acaatagtcgaaaacaaattaaacatataacgagtttcttgcaaattacttatttgtttagattgaaaagaacattactagtctattttatatacaatca 6536590  T
Q  183 attatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 235  Q
    |||||  |||||||| |||| ||||||||  || || ||||||||||||||||    
T  6536589 attataaataaaattcactttttaaaacatgttgtacccaacttttctaaata 6536537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 42353206 - 42353304
Alignment:
Q  135 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaat 234  Q
    ||||||||||||||||||  ||||| ||||||||||  |||| | |||||||||||||||||||||||| ||||| || ||||  |||| |||| |||||    
T  42353206 tttgtttacattgaaaaa--cattaataatctatttattaaacagtcaattatggataaaattgacttcataaaatacgttttgcccaaattttttaaat 42353303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 14521679 - 14521766
Alignment:
Q  121 ttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 209  Q
    ||||| ||||| | |||||||||||||||||| |||||| |||| |||||  |||| | ||||||||||||||||| ||||||||||||    
T  14521679 ttgcaaataacttgtttgtttacattgaaaaa-acattaataatatatttattaaacagtcaattatggataaaatagacttcttaaaa 14521766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 3498517 - 3498434
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaac 210  Q
    ||||| |||||||||||||||||||||||| ||||| ||||||| |||   |||||||| || | |||||| |||| |||||||    
T  3498517 ataacttatttgtttacattgaaaaagacaatattagtctatttagtatgcaatcaattctgaagaaaattaactttttaaaac 3498434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34033998 - 34034043
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaac 46  Q
    ||||||| |||||||||||||||| |||| |||||| |||||||||    
T  34033998 atagatttatttgtattggtttgatactttcggtcttaataacaac 34034043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 47367789 - 47368025
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaat-aaaaattatcaagacaatagtcataaaca 98  Q
    ||||||| ||||||| |||||||  | || | ||| |||||||||||||  ||||||||||||||| ||| ||||||||||||| ||||||| |||||||    
T  47367789 atagatttatttgtaatggtttggtattttcagtcgcaataacaactatagagaaaacttttttaacaattaaaaattatcaaggcaatagttataaaca 47367888  T
Q  99 tattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattg 198  Q
    ||| |||  || |||| |||||||||| |||  ||| |||||||||||| | |||||||||| | | ||||||||||| |||||| ||||||||||||||    
T  47367889 tatcaaacgggcaatgagtttcttgcaaatagtctaattgtttacattggagaagacattatcattatattttgtaaacaatcaaatatggataaaattg 47367988  T
Q  199 acttcttaaaacacattttaaccaacttttctaaata 235  Q
     ||| || |||||||||||  ||||||||| ||||||    
T  47367989 cctttttgaaacacattttgtccaacttttttaaata 47368025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 11142601 - 11142835
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacat 99  Q
    ||||||| |||||||||||||||| ||| ||| ||| ||||||||| ||  ||||  |||||| || |||||||||||||||||||||| | ||| |||     
T  11142601 atagatttatttgtattggtttgatactcccgatctaaataacaacaatagagaagcctttttcaacaataaaaattatcaagacaatatttatagacaa 11142700  T
Q  100 attaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattga 199  Q
    ||||||| |  |||| |||||||||  ||||||||||  ||||||||  ||||||||||||||||||||| | |||| |  ||||||| ||||||||||     
T  11142701 attaaatggacaatgagtttcttgcgaataacctattcatttacatttgaaaagacattattaatctattat-taaacagacaattattgataaaattgg 11142799  T
Q  200 cttcttaaaacacattttaaccaacttttctaaata 235  Q
     ||||| |||||||||||| ||||| ||||||||||    
T  11142800 gttcttgaaacacattttacccaacgtttctaaata 11142835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 44961379 - 44961613
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacat 99  Q
    ||||||| ||||| |||| |||||  ||| |||||||||||||||| ||  ||||| | |||| || | |||||||||||||||||||||||||| |||     
T  44961379 atagatttatttgcattgatttgatgctttcggtctcaataacaacaatagagaaacccttttcaacagtaaaaattatcaagacaatagtcatagacaa 44961478  T
Q  100 attaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattga 199  Q
    ||||||| |  |||| |||||||||| ||||||||||| ||||||||  ||||||||| ||||||||||| | ||||||| | ||||| ||| |||||||    
T  44961479 attaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagacatcattaatctattat-taaataaacgattattgatgaaattga 44961577  T
Q  200 cttcttaaaacacattttaaccaacttttctaaata 235  Q
     ||| | ||||  |||||| ||||| ||||||||||    
T  44961578 attcctgaaacgtattttacccaacatttctaaata 44961613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 1600741 - 1600504
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacat 99  Q
    ||||||| ||||| ||||||||||  ||| |||||||||||||||| ||  ||||| | |||| || |||||||||||||||||||||||||||| |||     
T  1600741 atagatttatttgcattggtttgatgctttcggtctcaataacaacaatagagaaacccttttcaacaataaaaattatcaagacaatagtcatagacaa 1600642  T
Q  100 attaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaaga---cattattaatctattttgtaaataatcaattatggataaaat 196  Q
    ||||||| |  |||| |||||||||| ||||||||||| ||||||||  ||||||   ||| ||||||||||| | ||||||| ||||||| ||| ||||    
T  1600641 attaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagaaatcatcattaatctattat-taaataaacaattattgatgaaat 1600543  T
Q  197 tgacttcttaaaacacattttaaccaacttttctaaata 235  Q
    ||  ||| | ||||  |||||| ||||| ||||||||||    
T  1600542 tgggttcctgaaacgtattttacccaacatttctaaata 1600504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 23614560 - 23614729
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacat 99  Q
    ||||||| |||||||||||||||| | || |||||||||||||||| || | |||| |||||| || || |||||||| ||||||||||||| || |||     
T  23614560 atagatttatttgtattggtttgatattttcggtctcaataacaacaataaagaaacctttttcaacaacaaaaattaacaagacaatagtcgtagacaa 23614659  T
Q  100 attaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 169  Q
    |||||| ||  |||| |||||||||| ||||| ||||| |||||||| |||||| |||||||||||||||    
T  23614660 attaaacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtcattattaatctatt 23614729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 19313318 - 19313507
Alignment:
Q  9 atttgtattggtttgaaacttccggtctcaataacaactattaga-aaacttttttaaa-aataaaaattatcaagacaatagtcataaacatattaaat 106  Q
    |||||||||  ||||| ||| ||| ||||||||||||| || ||| |||||||||| || ||||||||||||||| |||||||||||| ||| |||||||    
T  19313318 atttgtatttctttgatactcccgatctcaataacaacaat-agagaaacttttttcaacaataaaaattatcaaaacaatagtcatagacaaattaaat 19313416  T
Q  107 aggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattg 198  Q
    || || || |||||||||| ||||| ||||| ||||||||  ||||||||||||||||||||| | |||| | |||||||| ||| ||||||    
T  19313417 agatagtgagtttcttgcaaataacttatttatttacatttgaaaagacattattaatctattat-taaacagtcaattattgatgaaattg 19313507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 10406341 - 10406128
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacata 100  Q
    ||||||| ||||||||| |||||| ||| ||| |||||||||||||||  |||||  ||||| || ||||| |||||||||||||||||||||  ||| |    
T  10406341 atagatttatttgtatttgtttgatactcccgatctcaataacaactag-agaaacttttttcaacaataataattatcaagacaatagtcattgacaaa 10406243  T
Q  101 ttaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgac 200  Q
     ||||| |  | || |||||||||| ||||||||||| ||||||||  |||| |||||||||||||||| | |||| | |||||||| ||| ||||||      
T  10406242 ctaaatggacagtgagtttcttgcaaataacctatttatttacattcgaaaaaacattattaatctattat-taaacagtcaattattgatgaaattggg 10406144  T
Q  201 ttcttaaaacacattt 216  Q
    ||||| |||| |||||    
T  10406143 ttcttgaaacgcattt 10406128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 10177826 - 10178042
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactattaga-aaacttttttaaa-aataaaaattatcaagacaatagtcataaaca 98  Q
    ||||||| ||||||||| |||||| ||| ||| ||||||||||||| || ||| |||||||||| || |||||||||||||||||||||||||||  |||    
T  10177826 atagatttatttgtatttgtttgatactcccgatctcaataacaacaat-agagaaacttttttcaacaataaaaattatcaagacaatagtcattgaca 10177924  T
Q  99 tattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattg 198  Q
     | ||||| |    || |||||||||| ||||||||||| || |||||  |||| |||||||||||||||| | |||| | |||||||| ||| ||||||    
T  10177925 aactaaatggacggtgagtttcttgcaaataacctatttattcacatttgaaaaaacattattaatctattat-taaacagtcaattattgatgaaattg 10178023  T
Q  199 acttcttaaaacacatttt 217  Q
    | ||||| |||| ||||||    
T  10178024 agttcttgaaacgcatttt 10178042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 15757676 - 15757822
Alignment:
Q  10 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 108  Q
    ||||||||||||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  15757676 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 15757775  T
Q  109 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 155  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  15757776 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 15757822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 30950906 - 30950761
Alignment:
Q  91 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 189  Q
    |||||||| ||||||| |  | || |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||   ||||||||||    
T  30950906 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattgaaaaagacattattaatctatttagtaaacggtcaattatgg 30950807  T
Q  190 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 235  Q
    |||||||||  ||||| |||  |||||||  |||||||| ||||||    
T  30950806 ataaaattggtttcttgaaatgcattttacacaacttttttaaata 30950761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 10620063 - 10620209
Alignment:
Q  10 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 108  Q
    ||||||||||||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  10620063 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 10620162  T
Q  109 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 155  Q
      |||| |||||||| | ||||||||||| ||||||||  |||||||    
T  10620163 acaatgagtttcttgaaaataacctatttatttacatttgaaaagac 10620209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 52111159 - 52110950
Alignment:
Q  9 atttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 108  Q
    |||||||||||||||| |||| || |||||||||||||||  |||||||| ||| || |||||||||||||| || |||| ||||||||| ||||||||     
T  52111159 atttgtattggtttgatactttcgatctcaataacaactag-agaaaactatttcaacaataaaaattatcatgaaaataatcataaacaaattaaata- 52111062  T
Q  109 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaa 208  Q
                   || | |||||||||||||| |||| |||||||||||||||| | ||| ||||| | ||||||||| ||||||||| |||||||||    
T  52111061 ---------------catacaacctatttgtttatattggaaaagacattattaatttgtttagtaaaaagtcaattatgaataaaattggcttcttaaa 52110977  T
Q  209 acacattttaaccaacttttctaaata 235  Q
    ||  |||||  ||||||||| ||||||    
T  52110976 acgtattttgtccaacttttttaaata 52110950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 29799150 - 29799018
Alignment:
Q  91 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatgga 190  Q
    |||||||| ||||||| | || || ||||||| || |||||||||||||||||||||  |||||||||||||||| |||| |||||| ||||| ||| ||    
T  29799150 cataaacaaattaaatggatattgagtttcttacaaataacctatttgtttacattgggaaagacattattaatcaatttagtaaatgatcaaatataga 29799051  T
Q  191 taaaattgacttcttaaaacacattttaaccaa 223  Q
    |||||||| |||||| |||  ||||||| ||||    
T  29799050 taaaattggcttcttgaaatgcattttacccaa 29799018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 24134376 - 24134466
Alignment:
Q  118 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 209  Q
    |||||||| ||||| |||||||||||||| ||||| |||||| |||||| |||   ||||| ||||||||||||||||||||||||||||||    
T  24134376 ttcttgcaaataacatatttgtttacatttaaaaa-acattaataatctttttatcaaatagtcaattatggataaaattgacttcttaaaa 24134466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 27696583 - 27696493
Alignment:
Q  118 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 211  Q
    ||||| || |||||||||| |||||||||||||| ||||||| |||||| || | |||| ||||||||||||||||||||||||||||||||||    
T  27696583 ttcttacaaataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatcaattatggataaaattgacttcttaaaaca 27696493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 28403126 - 28403185
Alignment:
Q  111 aatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattt 170  Q
    |||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  28403126 aatgagtttcatgcaaataacctatttgtttacattgaaaaagacattattgatctattt 28403185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 40268669 - 40268759
Alignment:
Q  121 ttgcagataacctatttgtttacattgaaaaagacattattaatctatttt-gtaaataatcaattatggataaaattgacttcttaaaac 210  Q
    ||||| ||||| || ||||||| ||| ||||||||||||||| ||||||||  |||| ||| |||||| ||||||||||||||||||||||    
T  40268669 ttgcaaataacttacttgtttagatttaaaaagacattattagtctattttaataaacaattaattatagataaaattgacttcttaaaac 40268759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 33240918 - 33240850
Alignment:
Q  130 acctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattg 198  Q
    ||||||| |||||||||| |||| |||||||||||||||||  |||| | |||||||||||||||||||    
T  33240918 acctattagtttacattggaaaatacattattaatctatttattaaacactcaattatggataaaattg 33240850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 21972478 - 21972576
Alignment:
Q  135 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaat 234  Q
    |||| |||||||||||||  ||||| ||||||||||  |||| | |||||||||||||||||| ||||||||||| || ||||  |||| |||| |||||    
T  21972478 tttgcttacattgaaaaa--cattaataatctatttattaaacagtcaattatggataaaatttacttcttaaaatacgttttgcccaaattttttaaat 21972575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 46515655 - 46515753
Alignment:
Q  135 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaat 234  Q
    ||||||||||||||||||  ||||| ||||||||||  |||| | ||||| |||||||||||||| ||||||||| || ||||  |||| |||| |||||    
T  46515655 tttgtttacattgaaaaa--cattaataatctatttattaaacagtcaatcatggataaaattgagttcttaaaatacgttttgcccaaattttttaaat 46515752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 29358495 - 29358572
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaa 207  Q
    |||||||||| |||||||||||||| ||||||| |||||| || | |||| |||||||||||||||||| |||||||||||    
T  29358495 ataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaagaatcaattatggataaaagtgacttcttaa 29358572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 10989278 - 10989196
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 209  Q
    ||||| |||||||||||||||||||||||||||||| | ||||| |||   |||||||| || | |||||| |||| ||||||    
T  10989278 ataacttatttgtttacattgaaaaagacattattagtatatttagtatgcaatcaattctgaagaaaattaactttttaaaa 10989196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 8262067 - 8262168
Alignment:
Q  51 agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaa 150  Q
    |||| |||||||||| |||||||||| | |  |||||||| | ||||| |||||| || |||||  ||||||| | ||||| |||||| |||||||||||    
T  8262067 agaagacttttttaagaataaaaattgttagaacaatagttagaaacaaattaaacagataatgaatttcttgtaaataacttatttgcttacattgaaa 8262166  T
Q  151 aa 152  Q
    ||    
T  8262167 aa 8262168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 33322972 - 33322903
Alignment:
Q  133 tatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgactt 202  Q
    |||||||||| |||| |||||| |||| || ||||||| ||| | ||||||||||| |||||||||||||    
T  33322972 tatttgtttatattgtaaaagaaattactagtctatttagtatacaatcaattatgaataaaattgactt 33322903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 5184741 - 5184669
Alignment:
Q  135 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 209  Q
    ||||||||||||||||| ||||||| ||||||||||  |||  | ||||||||| |||||||||||| |||||||    
T  5184741 tttgtttacattgaaaa-gacattaataatctatttattaac-agtcaattatgcataaaattgactccttaaaa 5184669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 33241463 - 33241370
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcata 94  Q
    ||||||| |||| ||||| ||||| ||||   ||||||| ||||| |||  |||||||||||  || ||||||||||||||||||||||||||||    
T  33241463 atagatttatttatattgatttgatacttttagtctcaacaacaattatagagaaaacttttc-aacaataaaaattatcaagacaatagtcata 33241370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 4435183 - 4435417
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacat 99  Q
    ||||||| ||||||||| |||||| |||||||||||||||||||| |||  ||||| ||||||||| ||||||||||||| |||||||||||||| | |     
T  4435183 atagatttatttgtatttgtttgatacttccggtctcaataacaattatagagaaaccttttttaacaataaaaattatctagacaatagtcatagataa 4435282  T
Q  100 attaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattga 199  Q
     || ||| |  |||| |||||||| | ||||||||||| ||||||||  ||||||||||||||||||||| | |||| |  ||||||||||| |||||||    
T  4435283 ttttaatggacaatgagtttcttgtaaataacctatttatttacatttgaaaagacattattaatctattat-taaacagacaattatggatgaaattga 4435381  T
Q  200 cttcttaaaacacattttaaccaacttttctaaata 235  Q
     ||||| |||  ||||||  ||||| ||||||||||    
T  4435382 gttcttgaaatgcattttgcccaacgtttctaaata 4435417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 69 - 235
Target Start/End: Complemental strand, 42799275 - 42799108
Alignment:
Q  69 taaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctat 168  Q
    |||||||| | ||||||||||||||||||| ||||||| |  | || |||||||||| |||| |||||||||||||||| ||||||||||||||||||||    
T  42799275 taaaaattttaaagacaatagtcataaacaaattaaatggacattgagtttcttgcaaataaactatttgtttacattggaaaagacattattaatctat 42799176  T
Q  169 tttgt-aaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 235  Q
    || || |||| |||||||||||||||||||| |||||| |||  ||||||| ||||||||| ||||||    
T  42799175 ttagtaaaatgatcaattatggataaaattggcttcttgaaatgcattttatccaacttttttaaata 42799108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 45656017 - 45655899
Alignment:
Q  117 tttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattt 216  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||| ||||||||| ||| || |||  |||||    
T  45656017 tttcttgcaaataacctatttgtttacattgaaaaagacattattaatctatttagtaaacggtcaattatgaataaaattggctttttgaaatgcattt 45655918  T
Q  217 taaccaacttttctaaata 235  Q
    || ||||||||| ||||||    
T  45655917 tacccaacttttttaaata 45655899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 199
Target Start/End: Complemental strand, 21746285 - 21746137
Alignment:
Q  51 agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaa 150  Q
    ||||||| ||||||| |||||||||| | || |||||||||||||||| |||||| ||||| |  ||||| ||||  |||| ||||| ||||||||||||    
T  21746285 agaaaacgtttttaagaataaaaattgttaaaacaatagtcataaacaaattaaacaggtagtaagtttcatgcaagtaacttatttatttacattgaaa 21746186  T
Q  151 aagacattattaatctattttgtaaataatcaattatggataaaattga 199  Q
    | |||||||||| ||||||| ||| | ||||||||| | ||||||||||    
T  21746185 atgacattattagtctatttagtatacaatcaattaagaataaaattga 21746137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 16546354 - 16546499
Alignment:
Q  91 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 189  Q
    |||||||| ||||||| |  | || ||||||| || ||||||||||||||| |||||| |||||||||||||||||||||| |||||   ||||||||||    
T  16546354 cataaacaaattaaatggacattgagtttcttccaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 16546453  T
Q  190 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 235  Q
    |||||||||  ||||| |||  |||||||  |||||||| ||||||    
T  16546454 ataaaattggtttcttgaaatgcattttacacaacttttttaaata 16546499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 39070267 - 39070154
Alignment:
Q  116 gtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacat 214  Q
    |||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| |||||   |||||||||||||||||||  ||||| |||  |||    
T  39070267 gtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcat 39070168  T
Q  215 tttaaccaactttt 228  Q
    ||||  ||||||||    
T  39070167 tttacacaactttt 39070154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 14802774 - 14802671
Alignment:
Q  133 tatttgtttacattgaaaaagacattattaatctatttt-gtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttcta 231  Q
    ||||||||||||||  |||| |||||||||||||||||| ||||| ||||||||||  ||||||||| |||||| |||| | ||||  ||||||||||||    
T  14802774 tatttgtttacattagaaaaaacattattaatctatttttgtaaacaatcaattataaataaaattggcttcttgaaacgcgttttgtccaacttttcta 14802675  T
Q  232 aata 235  Q
    ||||    
T  14802674 aata 14802671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 26180634 - 26180689
Alignment:
Q  51 agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaat 106  Q
    ||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||    
T  26180634 agaaaacttttttaacaattaaaactatcaagacaatagtcataaacatattaaat 26180689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 35524747 - 35524657
Alignment:
Q  121 ttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 211  Q
    ||||| ||||| |||||||||||||||||||||||||||||| ||||||| |||   |||||||| || | |||||| |||| ||||||||    
T  35524747 ttgcaaataacttatttgtttacattgaaaaagacattattagtctatttagtatgcaatcaattctgaagaaaattaactttttaaaaca 35524657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 228
Target Start/End: Original strand, 37614591 - 37614731
Alignment:
Q  91 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttac---attgaaaaagacattattaatctattttgtaaataatcaattat 187  Q
    |||||||| |||||||||  | ||  ||||||||| |||||||||||||||||   |||| |||||||||||||||||||||| |||||     ||||||    
T  37614591 cataaacaaattaaatagacattgaatttcttgcaaataacctatttgtttactacattggaaaagacattattaatctatttagtaaacggctaattat 37614690  T
Q  188 ggataaaattgacttcttaaaacacattttaaccaactttt 228  Q
    | ||||| ||| |||||| |||  ||||||| |||||||||    
T  37614691 gaataaatttggcttcttgaaatgcattttacccaactttt 37614731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 34659370 - 34659535
Alignment:
Q  67 aataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatct 166  Q
    |||||||||||||||||||||||||||||||| ||||||| | ||||| |||| ||||| ||||| |||| ||||||||| ||||| |||||||||||||    
T  34659370 aataaaaattatcaagacaatagtcataaacaaattaaatggataatgagtttattgcaaataacttattagtttacatttaaaaatacattattaatct 34659469  T
Q  167 attttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaa 232  Q
    |||| ||||| | |||||||| ||||||||||  ||||| |||  ||||||  |||| ||||||||    
T  34659470 atttagtaaacactcaattatagataaaattggtttcttgaaatgcattttgtccaaattttctaa 34659535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 48609251 - 48609044
Alignment:
Q  10 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 108  Q
    ||||||||||||||| |||||| |||||||||||||| || | ||||||||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  48609251 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaaactttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 48609152  T
Q  109 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaa 208  Q
      |||| |||||||||| ||||||||||| || |||||  |||| |||||||||||||||| | |||| || ||||||| ||| ||||||  ||||| ||    
T  48609151 acaatgagtttcttgcaaataacctatttattaacatttgaaaacacattattaatctattat-taaacaaacaattattgatgaaattgggttcttgaa 48609053  T
Q  209 acacatttt 217  Q
    ||| |||||    
T  48609052 acatatttt 48609044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 29716000 - 29715766
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaa-aataaaaattatcaagacaatagtcataaacat 99  Q
    ||||||| ||||||||| |||||| |||   | ||||||||||||| ||   ||||||||||| || |||||||||||||||||||||||||||| |||     
T  29716000 atagatttatttgtatttgtttgatactcttgatctcaataacaacaatagaaaaacttttttcaacaataaaaattatcaagacaatagtcatagacaa 29715901  T
Q  100 attaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattga 199  Q
    ||||||| |    || |||||||| | ||||||||||| ||||||||  ||||||||||||||||||||| | |||| | || ||||| ||| ||||||     
T  29715900 attaaatggacggtgagtttcttgtaaataacctatttatttacatttgaaaagacattattaatctattat-taaacagtctattattgatgaaattgg 29715802  T
Q  200 cttcttaaaacacattttaaccaacttttctaaata 235  Q
     ||||| |||| ||||||  ||||| ||||||||||    
T  29715801 gttcttgaaacgcattttgcccaacgtttctaaata 29715766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 758835 - 758989
Alignment:
Q  16 ttggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatg 114  Q
    ||||||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||    ||||    
T  758835 ttggtttgatacttcccgtctcaataacaacgataaagaaacctttttcaataataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatg 758934  T
Q  115 cgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 169  Q
     |||||||||| |||| |||||| ||||||||  |||||||||||||||||||||    
T  758935 agtttcttgcaaataatctatttatttacatttgaaaagacattattaatctatt 758989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 46211817 - 46211663
Alignment:
Q  16 ttggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatg 114  Q
    ||||||||| |||| | |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||    ||||    
T  46211817 ttggtttgatactttccgtctcaataacaacgataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatg 46211718  T
Q  115 cgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 169  Q
     |||||||||| ||||||||||| ||||||||  |||||||||||||||||||||    
T  46211717 agtttcttgcaaataacctatttatttacatttgaaaagacattattaatctatt 46211663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 25592168 - 25592276
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 226  Q
    |||| |||||||| ||||||| |||| | ||||||||||||||||||||||| ||| |||||||||||||||  ||||| |||||||||||| |||||||    
T  25592168 ataatctatttgtgtacattgcaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatccaactt 25592267  T
Q  227 ttctaaata 235  Q
    || ||||||    
T  25592268 ttttaaata 25592276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 39719879 - 39720025
Alignment:
Q  10 tttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 108  Q
    ||||||||||||||| |||||| |||||||||||||| ||  |||||  ||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  39719879 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacatttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 39719978  T
Q  109 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 155  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  39719979 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 39720025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 13465458 - 13465603
Alignment:
Q  91 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 189  Q
    |||||||| ||||||| |  | || |||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| |||||   ||||||||||    
T  13465458 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 13465557  T
Q  190 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 235  Q
    |||||||||  ||||| |||  |||||||  |||||||| ||||||    
T  13465558 ataaaattggtttcttgaaatgcattttacacaacttttttaaata 13465603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 83768 - 83617
Alignment:
Q  20 tttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaat-aggtaatgcgt 117  Q
    ||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| ||||||  |   |||| ||    
T  83768 tttgatacttcccgtctcaataacaacgataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaaacatacaatgagt 83669  T
Q  118 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 169  Q
    |||||| | ||||||||||| ||||||||  |||||||||||||||||||||    
T  83668 ttcttgtaaataacctatttatttacatttgaaaagacattattaatctatt 83617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 28491315 - 28491460
Alignment:
Q  91 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 189  Q
    |||||||| ||||||| |  | || |||||||||| ||||||||||| ||| |||||| |||||||||||||||||||||| |||||   ||||||||||    
T  28491315 cataaacaaattaaatggacattgagtttcttgcaaataacctatttattttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 28491414  T
Q  190 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 235  Q
    |||||||||  ||||| |||  |||||||  ||| |||| ||||||    
T  28491415 ataaaattggtttcttgaaatgcattttacacaaattttttaaata 28491460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 176
Target Start/End: Original strand, 37202740 - 37202908
Alignment:
Q  9 atttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaata 107  Q
    |||| ||||||||||| ||||| | ||||||||| || |||   ||||| ||||| || | ||||| |||| ||||||||||||||||||| |||||||     
T  37202740 atttatattggtttgatacttctgctctcaataataattatggtgaaaattttttcaacattaaaagttattaagacaatagtcataaacaaattaaatg 37202839  T
Q  108 ggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaa 176  Q
    |  | |  |||||||||| |||| ||||||||||||||   |||| ||||||||||||||||| |||||    
T  37202840 gacattcagtttcttgcaaataatctatttgtttacatcagaaaaaacattattaatctatttagtaaa 37202908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 4678061 - 4677983
Alignment:
Q  137 tgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacatttt 217  Q
    ||||||||||||||| ||||||| |||||| || | |||||||| ||||||||||||||||||||||||||||||| ||||    
T  4678061 tgtttacattgaaaa-gacattaataatcttttat-taaataattaattatggataaaattgacttcttaaaacacgtttt 4677983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 17949064 - 17949259
Alignment:
Q  9 atttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaa---ttatcaagacaatagtcataaacatattaa 104  Q
    |||||||||  ||||| |||| ||||||||| || || |||| | ||||| ||||||| ||||||||   || ||||||||||| |||  |||| || ||    
T  17949064 atttgtattaatttgacactttcggtctcaacaataaatattgataaaacatttttaagaataaaaaaaattgtcaagacaatactca--aacaaatcaa 17949161  T
Q  105 ataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgactt 202  Q
    | || ||||| ||||||||||  |||| | ||||||||||||||| || ||||||| | |||||||  || | ||||||||||| |||||||||||||    
T  17949162 acagataatgagtttcttgcaattaacttgtttgtttacattgaataatacattataagtctatttaatatacaatcaattatgaataaaattgactt 17949259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 14047053 - 14047153
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 226  Q
    ||||||||| |||  ||||||||||  | ||||||||||||||||||||||| ||| |||||| ||||||||  ||||| |||||||||||  |||||||    
T  14047053 ataacctatatgtgcacattgaaaat-atattattaatctattttgtaaatagtcatttatggctaaaattggtttcttgaaacacattttgtccaactt 14047151  T
Q  227 tt 228  Q
    ||    
T  14047152 tt 14047153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 14357083 - 14357183
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 226  Q
    ||||||||| |||  ||||||||||  | ||||||||||||||||||||||| ||| |||||| ||||||||  ||||| |||||||||||  |||||||    
T  14357083 ataacctatatgtgcacattgaaaat-atattattaatctattttgtaaatagtcatttatggctaaaattggtttcttgaaacacattttgtccaactt 14357181  T
Q  227 tt 228  Q
    ||    
T  14357182 tt 14357183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 45855585 - 45855676
Alignment:
Q  118 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 211  Q
    ||||| || |||||||||| |||||||||||||| ||||||| |||||| || |  ||| ||| ||||||||||||||||||||||||||||||    
T  45855585 ttcttacaaataacctatt-gtttacattgaaaa-gacattagtaatcttttattaaaacaattaattatggataaaattgacttcttaaaaca 45855676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 25592066 - 25592161
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataa 95  Q
    ||||||| |||||||||| ||||  ||||||| |||||||||||| |||  ||| |||||||| || |||||||| |||||||| |||||||||||    
T  25592066 atagatttatttgtattgatttggtacttccgctctcaataacaattatagagagaactttttcaacaataaaaactatcaagataatagtcataa 25592161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 40253671 - 40253593
Alignment:
Q  133 tatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 211  Q
    |||||||||||||||||||||||||||||| ||||||| |||   |||||||| || | |||||| |||| ||||||||    
T  40253671 tatttgtttacattgaaaaagacattattagtctatttagtatgcaatcaattctgaagaaaattaactttttaaaaca 40253593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 20926878 - 20926806
Alignment:
Q  135 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 209  Q
    |||||||||||| |||||  ||||| ||||||||||  |||| | |||||||||||||||||| |||||||||||    
T  20926878 tttgtttacattaaaaaa--cattaataatctatttattaaacagtcaattatggataaaatttacttcttaaaa 20926806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 37049134 - 37049224
Alignment:
Q  118 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 209  Q
    ||||| || ||||||||||||||||||||| |||||||||||||||||| |||  |||| | | |||||   ||||||||| ||||||||||    
T  37049134 ttcttacaaataacctatttgtttacattg-aaaagacattattaatctttttattaaacagttaattacaaataaaattggcttcttaaaa 37049224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 25439623 - 25439575
Alignment:
Q  129 aacctatttgttt-acattgaaaaagacattattaatctattttgtaaa 176  Q
    ||||||||||||| |||||| |||||||||||||||||||||| |||||    
T  25439623 aacctatttgttttacattggaaaagacattattaatctatttagtaaa 25439575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27097126 - 27097174
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactat 49  Q
    ||||||| |||||||||||||||| ||||   |||||||||||||||||    
T  27097126 atagattaatttgtattggtttgatacttttagtctcaataacaactat 27097174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27181177 - 27181129
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactat 49  Q
    ||||||| |||||||||||||||| ||||   |||||||||||||||||    
T  27181177 atagattaatttgtattggtttgatacttttagtctcaataacaactat 27181129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 235
Target Start/End: Original strand, 37003822 - 37003919
Alignment:
Q  136 ttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 235  Q
    ||||||||||||||| |  ||||| |||||| ||   |||| |||||| |||| |||||||| | |||||||||||| ||||  ||||||||| ||||||    
T  37003822 ttgtttacattgaaaca--cattaataatcttttcattaaacaatcaactatgaataaaattaatttcttaaaacacgttttgcccaacttttttaaata 37003919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37712950 - 37712998
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactat 49  Q
    ||||||| |||||||||||||||| ||||   |||||||||||||||||    
T  37712950 atagattaatttgtattggtttgatacttttagtctcaataacaactat 37712998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 292423 - 292189
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacat 99  Q
    ||||||| |||||||||||||||| ||| ||| ||||||||||||||||  ||||  |||||| || |||||||||||||||||||||| ||||| |||     
T  292423 atagatttatttgtattggtttgatactcccgatctcaataacaactatagagaagcctttttcaacaataaaaattatcaagacaatattcatagacaa 292324  T
Q  100 attaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattga 199  Q
    |||||||    |||| |||||||||  ||||||||||| |||| |||  |||||||| |||||||||||| | |||| |  ||||||| ||| ||||||     
T  292323 attaaatgaacaatgagtttcttgcgaataacctatttatttatatttgaaaagacactattaatctattat-taaacaggcaattattgatgaaattgg 292225  T
Q  200 cttcttaaaacacattttaaccaacttttctaaata 235  Q
     ||||| |||||||||||  ||||| ||||||||||    
T  292224 gttcttgaaacacattttgcccaacgtttctaaata 292189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 16152221 - 16152390
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacat 99  Q
    ||||||| |||||||||||||||| | || |||||||||||||||| || | |||| |||||| || || |||||||||||||||||||||| || |||     
T  16152221 atagatttatttgtattggtttgatattttcggtctcaataacaacaataaagaaacctttttcaacaacaaaaattatcaagacaatagtcgtagacaa 16152320  T
Q  100 attaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 169  Q
    |||||| ||  |||| |||||||||| ||||| ||||| |||||||| |||||| |||||||||||||||    
T  16152321 attaaacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtcattattaatctatt 16152390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 17653133 - 17652926
Alignment:
Q  10 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 108  Q
    ||||||||||||||| ||||||  ||||||||||||| || | | ||||||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  17653133 tttgtattggtttgatacttcccatctcaataacaacaataaagtaaactttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 17653034  T
Q  109 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaa 208  Q
      |||| |||||||||| ||||||||||| || |||||  ||||||||||||||||||||| | |||| || ||||||| ||| ||||||  ||||| ||    
T  17653033 acaatgagtttcttgcaaataacctatttattaacatttgaaaagacattattaatctattat-taaacaaacaattattgatgaaattgggttcttgaa 17652935  T
Q  209 acacatttt 217  Q
    ||| |||||    
T  17652934 acatatttt 17652926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 20843258 - 20843140
Alignment:
Q  117 tttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattt 216  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||  || |||||||||||||||| |||||| |||  |||||    
T  20843258 tttcttgcaaataacctatttgtttacattggaaaagacattattaatctatttagtaaatggtctattatggataaaattggcttcttgaaatgcattt 20843159  T
Q  217 taaccaacttttctaaata 235  Q
    || ||||||||| ||||||    
T  20843158 tacccaacttttttaaata 20843140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 52403338 - 52403230
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 226  Q
    |||| |||||||| ||||||| |||| | ||||||||||||||||||||||| ||| |||||||||||||||  ||||| |||||||||||| |||||||    
T  52403338 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatccaactt 52403239  T
Q  227 ttctaaata 235  Q
    || ||||||    
T  52403238 ttttaaata 52403230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 21295932 - 21296078
Alignment:
Q  10 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 108  Q
    ||||||||||||||| |||||| |||||| ||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  21295932 tttgtattggtttgatacttcccgtctcagtaacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 21296031  T
Q  109 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 155  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  21296032 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 21296078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 46823804 - 46823950
Alignment:
Q  10 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 108  Q
    ||||||||||||||| |||| | |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  46823804 tttgtattggtttgatactttccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 46823903  T
Q  109 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 155  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  46823904 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 46823950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 232
Target Start/End: Original strand, 29648402 - 29648564
Alignment:
Q  72 aaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatttt 171  Q
    |||||||||||||||||||||||| || ||||||  |  |||  |||| ||||| || |  | |||||||| ||||||||||| ||||||||| |||||     
T  29648402 aaattatcaagacaatagtcataatcaaattaaacggacaataggtttattgcaaatgatttctttgtttatattgaaaaagagattattaatttattta 29648501  T
Q  172 gtaaataatca--attatggataaaattgacttcttaaaacacattttaaccaacttttctaa 232  Q
    ||||| |||||  |||||||||||||||||||||||||||  ||||||   ||||||||||||    
T  29648502 gtaaacaatcaatattatggataaaattgacttcttaaaatccattttgctcaacttttctaa 29648564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 38171472 - 38171566
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaa----ttatggataaaattgacttcttaaaacacatttt 217  Q
    ||||||||||||| || |||  |||||||||||||||||||||||||||| ||||||    ||||||||||||||||||| ||||||||||||||    
T  38171472 ataacctatttgtgtaaattagaaaagacattattaatctattttgtaaacaatcaatcatttatggataaaattgactttttaaaacacatttt 38171566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 40763813 - 40763958
Alignment:
Q  91 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 189  Q
    |||||||| ||||||| |  | || |||||||||| ||||||||||||||| |||||| |||| ||||||||||||||||| |||||   ||||||||||    
T  40763813 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaaaacattattaatctatttagtaaacggtcaattatgg 40763912  T
Q  190 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 235  Q
    |||||||||  ||||| |||  |||||||  |||||||| ||||||    
T  40763913 ataaaattggtttcttgaaatgcattttacacaacttttttaaata 40763958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 11028038 - 11027932
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacat 99  Q
    ||||||| |||||||||||||||| |||||| |||||||||||||| ||  ||||| |||||| ||||| ||||||| ||||||||||||||||  |||     
T  11028038 atagatttatttgtattggtttgatacttccagtctcaataacaacaataaagaaacctttttcaaaaacaaaaattctcaagacaatagtcatggacaa 11027939  T
Q  100 attaaat 106  Q
    |||||||    
T  11027938 attaaat 11027932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 11906655 - 11906547
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 226  Q
    |||| |||||||| |||||||||||| | ||||||||||||||||||||||  ||| ||||| |||||||||   |||| |||||||||| | |||||||    
T  11906655 ataatctatttgtgtacattgaaaaatatattattaatctattttgtaaattgtcatttatgaataaaattgggctcttgaaacacatttcatccaactt 11906556  T
Q  227 ttctaaata 235  Q
    || ||||||    
T  11906555 ttttaaata 11906547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 52403439 - 52403345
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaatagtcataa 95  Q
    ||||||| |||||||||||||||   |||||  |||||||||||| ||| ||| |||||||| || |||||||| ||||||||||||||||||||    
T  52403439 atagatttatttgtattggtttggttcttccactctcaataacaattataagagaactttttcaacaataaaaactatcaagacaatagtcataa 52403345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 19795664 - 19795745
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 211  Q
    |||||||||| |||||||||||||| ||||||| |||||| || | |||| ||||||||||||||||||||||||||||||||||    
T  19795664 ataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatcaattatggataaaattgacttcttaaaaca 19795745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 37175495 - 37175588
Alignment:
Q  118 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacac 212  Q
    |||||||| |||| |||||| |||||||| |||||||||||| ||||||||||  |||  | | |||||||||||||||| ||||||||||||||    
T  37175495 ttcttgcaaataatctatttatttacatt-aaaaagacattaataatctatttattaatcatttaattatggataaaattaacttcttaaaacac 37175588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 35062063 - 35062153
Alignment:
Q  118 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 211  Q
    ||||| || |||||||||| |||||||||||||| ||| ||| |||||| || | |||| ||||||||||||||||||||||||||||||||||    
T  35062063 ttcttacaaataacctatt-gtttacattgaaaa-gacgttagtaatcttttat-taaacaatcaattatggataaaattgacttcttaaaaca 35062153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 40785772 - 40785851
Alignment:
Q  136 ttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacatttt 217  Q
    |||||||||||||||| ||||||| |||||| || | |||| ||| ||||||||||||||||||||||||||||||| ||||    
T  40785772 ttgtttacattgaaaa-gacattaataatcttttat-taaacaattaattatggataaaattgacttcttaaaacacgtttt 40785851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 3458173 - 3458029
Alignment:
Q  91 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatgga 190  Q
    |||||||| ||||||| | || || |||||||||| ||||| |||||||||||| || | |||||||||||||| ||| | |||||   |||||||| ||    
T  3458173 cataaacaaattaaatggatattgagtttcttgcaaataacttatttgtttacactggagaagacattattaatttatctagtaaacggtcaattataga 3458074  T
Q  191 taaaattgacttcttaaaacacattttaaccaacttttctaaata 235  Q
    ||||||||  ||||| |||   |||||| ||||| ||| ||||||    
T  3458073 taaaattggtttcttgaaatttattttacccaacctttttaaata 3458029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 35106547 - 35106470
Alignment:
Q  130 acctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 209  Q
    |||| ||| ||||||||||||||  ||||| ||||||||||  |||| | ||||||||||||||||||||||||||||||    
T  35106547 acctgtttctttacattgaaaaa--cattaataatctatttattaaacagtcaattatggataaaattgacttcttaaaa 35106470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 11906756 - 11906662
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataa 95  Q
    ||||||| |||||||||||||||  ||||||| |||||||||||| |||  ||| ||| |||| || |||||||| ||||||||||||||||||||    
T  11906756 atagatttatttgtattggtttggtacttccgctctcaataacaattatagagagaac-ttttcaacaataaaaactatcaagacaatagtcataa 11906662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 36312341 - 36312269
Alignment:
Q  135 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 209  Q
    ||||||||||||||||||  ||||| ||||||||||  |||| | |||||||||||||||||| |||||||||||    
T  36312341 tttgtttacattgaaaaa--cattaataatctatttattaaacagtcaattatggataaaatttacttcttaaaa 36312269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29123504 - 29123552
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactat 49  Q
    ||||||| |||||||||||||||| ||||   |||||||||||||||||    
T  29123504 atagattaatttgtattggtttgatacttttagtctcaataacaactat 29123552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 34729775 - 34729935
Alignment:
Q  10 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 108  Q
    ||||||||||||||| |||||| |||||||||||||| || | ||||||||||| || ||||||||| |||| ||||||||||||| |||  ||||||      
T  34729775 tttgtattggtttgatacttcccgtctcaataacaacaataacgaaaactttttcaacaataaaaatgatcatgacaatagtcatagacaagttaaatgt 34729874  T
Q  109 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 169  Q
      |||| |||||||||| ||||||||||| || ||||| ||||||||||||||||||||||    
T  34729875 acaatgagtttcttgcaaataacctatttattaacatttaaaaagacattattaatctatt 34729935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 29363685 - 29363531
Alignment:
Q  16 ttggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatg 114  Q
    ||||||||| |||| | |||||||||||||| |  | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||    ||||    
T  29363685 ttggtttgatactttccgtctcaataacaacgacaaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatg 29363586  T
Q  115 cgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 169  Q
     |||||||||| ||||||||||| ||||||||  |||||||||||||||||||||    
T  29363585 agtttcttgcaaataacctatttatttacatttgaaaagacattattaatctatt 29363531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 29486386 - 29486588
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacat 99  Q
    ||||||| |||| |||||||| || ||||| ||||||||||| |  |||  |||||||||||  || | |||||||||| |||||||||||||||||||     
T  29486386 atagatttatttatattggtt-gatacttctggtctcaataatagttatagagaaaacttttc-aagagtaaaaattattaagacaatagtcataaacaa 29486483  T
Q  100 attaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattga 199  Q
    ||||| | |  |||  |||||||||| |||||||||||  ||||||||||||| | |||| |||||||||| |||||   ||||||||||||||| ||||    
T  29486484 attaattggacaata-gtttcttgcaaataacctattttcttacattgaaaaatatattaataatctatttagtaaacggtcaattatggataaatttga 29486582  T
Q  200 cttctt 205  Q
    ||||||    
T  29486583 cttctt 29486588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 21216444 - 21216552
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 226  Q
    |||||||| |||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||  ||| || || ||||||||| | |||||    
T  21216444 ataacctacttgtatacatggaaaaagacattattaatctattttgtaaatagtcatttatggataaaatttgctttttgaatcacattttatctaactt 21216543  T
Q  227 ttctaaata 235  Q
    || ||||||    
T  21216544 ttttaaata 21216552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 22956504 - 22956396
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 226  Q
    |||| |||||||| ||||||| |||| | ||||||||||||||||||||||| ||| |||||||||||||||  ||||| |||||||||||| | |||||    
T  22956504 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatcaaactt 22956405  T
Q  227 ttctaaata 235  Q
    || ||||||    
T  22956404 ttttaaata 22956396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 23831888 - 23831996
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 226  Q
    |||| |||||||| ||||||| |||| | ||||||||||||||||||||||| ||| |||||||||||||||  ||||| |||||||||||| | |||||    
T  23831888 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatcaaactt 23831987  T
Q  227 ttctaaata 235  Q
    || ||||||    
T  23831988 ttttaaata 23831996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 1780740 - 1780595
Alignment:
Q  91 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 189  Q
    |||||||| ||||||| |  | || |||||||||| |||||| |||||||| |||||| |||||||||||||||||||||| |||||   ||||||||||    
T  1780740 cataaacaaattaaatggacattgagtttcttgcaaataaccaatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 1780641  T
Q  190 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 235  Q
    |||||||||  ||||| |||  |||||||  |||||||| ||||||    
T  1780640 ataaaattggtttcttgaaatgcattttacacaacttttttaaata 1780595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 175
Target Start/End: Original strand, 24428780 - 24428907
Alignment:
Q  51 agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacat---attaaataggtaatgcgtttcttgcagataacctatttgtttacattg 147  Q
    ||||||||||||  | | |||||||||| |||||||||||||||||||    ||||||| |  | || |||||||| | |||||||||||||| ||||||    
T  24428780 agaaaactttttgtacagtaaaaattattaagacaatagtcataaacaacaaattaaatggacattgagtttcttgaaaataacctatttgttaacattg 24428879  T
Q  148 aaaaagacattattaatctattttgtaa 175  Q
    ||||||||||||||||||||||| ||||    
T  24428880 aaaaagacattattaatctatttagtaa 24428907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 31216346 - 31216241
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 226  Q
    ||||||||||||| ||||||| |||| |   ||||||||||||||||||||| ||| ||||||||||||||| |||||| |||||||||||  ||||||     
T  31216346 ataacctatttgtgtacattggaaaata---tattaatctattttgtaaatagtcatttatggataaaattggcttcttgaaacacattttgtccaacta 31216250  T
Q  227 ttctaaata 235  Q
    || ||||||    
T  31216249 ttttaaata 31216241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 22956606 - 22956511
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataa 95  Q
    ||||||| |||||||||||||||  ||||||| |||||||||||| |||  ||| |||||||| || |||||||| ||||||||||||||||||||    
T  22956606 atagatttatttgtattggtttggtacttccgctctcaataacaattatagagagaactttttcaacaataaaaactatcaagacaatagtcataa 22956511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 23831786 - 23831881
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataa 95  Q
    ||||||| |||||||||||||||  ||||||| |||||||||||| |||  ||| |||||||| || |||||||| ||||||||||||||||||||    
T  23831786 atagatttatttgtattggtttggtacttccgctctcaataacaattatagagagaactttttcaacaataaaaactatcaagacaatagtcataa 23831881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 8559969 - 8559888
Alignment:
Q  127 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 211  Q
    |||||||||| |||||||||||||| ||||||| |||||| || | |||| ||||||||||||||||||||||||||||||||||    
T  8559969 ataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatcaattatggataaaattgacttcttaaaaca 8559888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 904073 - 903993
Alignment:
Q  135 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacatttt 217  Q
    ||||||||||||||||||  ||||| |||| |||||  ||||   |||||||||||||||||| ||||||||||| |||||||    
T  904073 tttgtttacattgaaaaa--cattaataatttatttattaaacggtcaattatggataaaatttacttcttaaaatacatttt 903993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 33224841 - 33224879
Alignment:
Q  173 taaataatcaattatggataaaattgacttcttaaaaca 211  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  33224841 taaacaatcaattatggataaaattgacttcttaaaaca 33224879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 31216449 - 31216353
Alignment:
Q  1 atagattcatttgtattggttt-gaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataa 95  Q
    ||||||| |||||||||||||| || ||||||||| | ||||| || |||  ||||||||||||  | | |||||| ||||||||||||||||||||    
T  31216449 atagatttatttgtattggttttgatacttccggttttaataataattatagagaaaactttttccacactaaaaactatcaagacaatagtcataa 31216353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 27673985 - 27674021
Alignment:
Q  9 atttgtattggtttgaaacttccggtctcaataacaa 45  Q
    |||||||||||||||| |||| |||||||||||||||    
T  27673985 atttgtattggtttgatactttcggtctcaataacaa 27674021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 6613 - 6773
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactattaga-aaacttttttaaa-aataaaaattatcaagacaatagtcataaaca 98  Q
    ||||||| |||||||||  ||||| |||  || ||||||||||||| | |||| |||||||||| || |||||||||||   |||||||||||||| |||    
T  6613 atagatttatttgtatttatttgatactctcgatctcaataacaac-actagagaaacttttttcaacaataaaaatta---agacaatagtcatagaca 6708  T
Q  99 tattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaa 163  Q
     ||||||| |  ||||  ||||||||| ||||||||||| ||||||||  |||||||||||||||    
T  6709 aattaaatggacaatgaatttcttgcaaataacctatttatttacatttgaaaagacattattaa 6773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 7066 - 6960
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactattag-aaaacttttttaaaaataaaaattatcaagacaatagtcataaacat 99  Q
    ||||||| |||| ||||||||||| |||| | ||||| ||||||| |||  | |||||||| | || ||||||||||||||||||||||||||||||||     
T  7066 atagatttatttatattggtttgatactttcagtctcgataacaattatagggaaaactttgtcaacaataaaaattatcaagacaatagtcataaacag 6967  T
Q  100 attaaat 106  Q
    |||||||    
T  6966 attaaat 6960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 428449 - 428333
Alignment:
Q  69 taaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctat 168  Q
    |||||||||| ||||||||||| ||||||| ||||||| |  |||  ||||||| || |||| ||||||| |||||||| |||| |||||||||||||||    
T  428449 taaaaattattaagacaatagtaataaacaaattaaatggacaata-gtttcttacaaataatctatttgcttacattggaaaatacattattaatctat 428351  T
Q  169 tttgtaaataatcaatta 186  Q
    || ||||| | |||||||    
T  428350 ttagtaaacagtcaatta 428333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1554 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1554
Description:

Target: scaffold1554; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 720 - 812
Alignment:
Q  1 atagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcat 93  Q
    ||||||| |||||||||||||||| | ||| ||||| ||||||||| ||  ||||| |||||| || |||||||||||||||||||||||||||    
T  720 atagatttatttgtattggtttgatatttc-ggtctaaataacaacaatagagaaacctttttcaacaataaaaattatcaagacaatagtcat 812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 212060 - 212150
Alignment:
Q  118 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 211  Q
    ||||| || |||||||||| |||||||||||||| ||||||| |||||| || | |||| ||||||||||| ||||||||||||||||||||||    
T  212060 ttcttacaaataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatcaattatgaataaaattgacttcttaaaaca 212150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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