View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_high_39 (Length: 241)
Name: NF4689_high_39
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_high_39 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 13322917 - 13322677
Alignment:
| Q |
1 |
cacagaattactacaactccataactttaattcatttcacttgtataatccattaataagtaaattaatacacgtgaaaatagacaaacacaaatcattc |
100 |
Q |
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| T |
13322917 |
cacagaattactacaactccataactttaattcatttcacttgtataatccattaataagtaaattaatacacgtgaaaatagacaaacacaaatcattc |
13322818 |
T |
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| Q |
101 |
ttatcaattttactatgacctaaatattagaccaataaagcatgccccatataatcaaaacaaggctcattagaacatggcttgtagctttcacagcttg |
200 |
Q |
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| T |
13322817 |
ttatcaattttactatgacctaaatattagaccaacaaagcatgccccatataatgaaaacaaggctcattagaacatggcttgtagctttcacagcttg |
13322718 |
T |
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| Q |
201 |
gttttcttcagcctggatgtgctcagccacattaaagtttc |
241 |
Q |
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| T |
13322717 |
gttttcttcagcctggatgtgctcagccacattaaagtttc |
13322677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 13326539 - 13326465
Alignment:
| Q |
42 |
tgtataatccattaataagtaaattaatacacgtgaaaatagacaaacacaaatcattcttatcaattttactatg |
117 |
Q |
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| T |
13326539 |
tgtataatc-attgataagtaaattaatacacatgaaaatagcgaaacacaattcattattatcaattttactatg |
13326465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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