View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_high_9 (Length: 434)
Name: NF4689_high_9
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_high_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 20 - 414
Target Start/End: Original strand, 40950465 - 40950859
Alignment:
| Q |
20 |
tgcccatcatgatttccatgcaaatgaaggataagttagttagtaaaaggtgaaaggtatttaagccacggacaaaacagtttgaagtttcaaaattatt |
119 |
Q |
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| T |
40950465 |
tgcccatcatgatttccatgcaaatgaaggataagttagttagtaaaaggtgaaaggtatttaagccacggacaaaacagtttgaagtttcaaaattatt |
40950564 |
T |
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| Q |
120 |
ttttccatgactatgatcttagatctatatgatatgtagctctctatagtatagtcatagtctagggactatatggattaattacaaatagctacaaata |
219 |
Q |
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| T |
40950565 |
ttttccatgactatgatcttagatctatatgatatgtagctctctatagtatagtcatagtctagggactatatggattaattacaaatagctacaaata |
40950664 |
T |
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| Q |
220 |
gagtagactcgcctgcatagttacagtcaaataaatgcgaccaacaagataagatgactgtccaaaaagcacttcacatggttatggggccaattgcatc |
319 |
Q |
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| T |
40950665 |
gagtagactcgcctgcatagttacagtcaaataaatgcgaccaacaagataagatgactgtccaaaaagcacttcacatggttatggggccaattgcatc |
40950764 |
T |
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| Q |
320 |
cttctttagcatccctatctttctttcacactgtagttcttatgctcctcatgttccccactcaaattctctgtctatgtttccttttctattag |
414 |
Q |
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| T |
40950765 |
cttctttagcatccctatctttctttcacactgtagttcttatgctcctcatgttccccactcaaattctttgtctatgtttccttttctattag |
40950859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 434
Target Start/End: Original strand, 35814444 - 35814473
Alignment:
| Q |
405 |
tttctattagagaaatgatatttgtacaac |
434 |
Q |
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| T |
35814444 |
tttctattagagaaatgatatttgtacaac |
35814473 |
T |
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