View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4689_low_10 (Length: 423)

Name: NF4689_low_10
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4689_low_10
NF4689_low_10
[»] chr8 (1 HSPs)
chr8 (11-408)||(8103901-8104310)
[»] chr7 (3 HSPs)
chr7 (23-64)||(46578122-46578163)
chr7 (28-72)||(20337346-20337390)
chr7 (23-60)||(26018088-26018125)
[»] chr1 (1 HSPs)
chr1 (23-68)||(40861247-40861292)
[»] chr6 (1 HSPs)
chr6 (23-61)||(5522624-5522662)
[»] chr3 (3 HSPs)
chr3 (18-72)||(1796027-1796081)
chr3 (23-57)||(26550288-26550322)
chr3 (23-68)||(9692765-9692810)
[»] chr2 (1 HSPs)
chr2 (24-68)||(16447234-16447278)


Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Original strand, 8103901 - 8104310
Alignment:
Q  11 caaagggataaggagagaaagtaaaattataatgtgaagatgagagataaaattatcataaa------------ttgatggtagaaattgtcatttttgt 98  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||| ||||||||||||||||||||    
T  8103901 caaagcgataaggagagaaagtaaaattataatgtgaagatgagagataaaattatcataaaaattatcacaaattgatagtagaaattgtcatttttgt 8104000  T
Q  99 ttggaatgcagtcgtcatgtatgatggggcgtggaaccgtgaatagttggagttgtgttgcttatgtgatttgctgcattattggatttcatgtcagcaa 198  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8104001 ttagaatgcagtcgtcatgtatgatggggcgtggaaccgtgaatagttggagttgtgttgcttatgtgatttgctgcattattggatttcatgtcagcaa 8104100  T
Q  199 aaagagtttagttttagttgatagactctgttctatgctagctacattgagcagctggattaaatttgagattgattaaaccattaaattggtctatatc 298  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8104101 aaagagtttagttttagttgatggactctgttctatgctagctacattgagcagctggattaaatttgagattgattaaaccattaaattggtctatatc 8104200  T
Q  299 tctatgtataccacttttaaatttgttcttgattaaattaatattttaaaatagtcttgtcacaagtttgagattaaggtcttttatgttttgttatata 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8104201 tctatgtataccacttttaaatttgttcttgattaaattaatattttaaaatagtcttgtcacaagtttgagattaaggtcttttatgttttgttatata 8104300  T
Q  399 atgaatatta 408  Q
    ||||||||||    
T  8104301 atgaatatta 8104310  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 46578122 - 46578163
Alignment:
Q  23 gagagaaagtaaaattataatgtgaagatgagagataaaatt 64  Q
    ||||||||||||||| |||||||||| |||||||||||||||    
T  46578122 gagagaaagtaaaatgataatgtgaatatgagagataaaatt 46578163  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 20337390 - 20337346
Alignment:
Q  28 aaagtaaaattataatgtgaagatgagagataaaattatcataaa 72  Q
    ||||||||| ||||||||||| |||||||| ||||||||||||||    
T  20337390 aaagtaaaaatataatgtgaatatgagagagaaaattatcataaa 20337346  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 26018125 - 26018088
Alignment:
Q  23 gagagaaagtaaaattataatgtgaagatgagagataa 60  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  26018125 gagagaaagtaaaaatataatgtgaatatgagagataa 26018088  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 40861247 - 40861292
Alignment:
Q  23 gagagaaagtaaaattataatgtgaagatgagagataaaattatca 68  Q
    ||||||||||||||  |||||||||| |||||||||||||||||||    
T  40861247 gagagaaagtaaaaagataatgtgaatatgagagataaaattatca 40861292  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 5522624 - 5522662
Alignment:
Q  23 gagagaaagtaaaattataatgtgaagatgagagataaa 61  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  5522624 gagagaaagtaaaagtataatgtgaatatgagagataaa 5522662  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 1796027 - 1796081
Alignment:
Q  18 ataaggagagaaagtaaaattataatgtgaagatgagagataaaattatcataaa 72  Q
    |||| ||||||| ||||||  |||||||||| |||||||| ||||||||||||||    
T  1796027 ataaagagagaatgtaaaaacataatgtgaacatgagagagaaaattatcataaa 1796081  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 26550322 - 26550288
Alignment:
Q  23 gagagaaagtaaaattataatgtgaagatgagaga 57  Q
    |||||||||||||||||||||||||| ||||||||    
T  26550322 gagagaaagtaaaattataatgtgaatatgagaga 26550288  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 9692810 - 9692765
Alignment:
Q  23 gagagaaagtaaaattataatgtgaagatgagagataaaattatca 68  Q
    ||||||||||||||| |||||||||| |||||||| ||| ||||||    
T  9692810 gagagaaagtaaaatgataatgtgaatatgagagagaaagttatca 9692765  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 16447234 - 16447278
Alignment:
Q  24 agagaaagtaaaattataatgtgaagatgagagataaaattatca 68  Q
    ||||||| ||||| ||||||||||| |||||||| ||||||||||    
T  16447234 agagaaaataaaaatataatgtgaatatgagagagaaaattatca 16447278  T

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