View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_low_11 (Length: 415)
Name: NF4689_low_11
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 220 - 399
Target Start/End: Complemental strand, 42637016 - 42636829
Alignment:
| Q |
220 |
catgtcaacaacttaaagtttgatgtagaaacaccttctgatatgtgagggataattttgtatattatcagtcatattgaactttacatttatgtcatgt |
319 |
Q |
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| T |
42637016 |
catgtcaacaacttaaagtttgatgtagaaacaccttctgatatgtgtgggataattttgtatattatcagtcatattgaactttacatttatgtcatgt |
42636917 |
T |
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| Q |
320 |
tagcatcatagcatgtgttgata--------ttataaatttactgtaacgctattattgttgtgaaatttgaagaaagcaatgttcat |
399 |
Q |
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| T |
42636916 |
tagcatcatagcatgtgttgataaatagtggttataattttactgcaacgctattattgttgtgaaatttgaacaaagcaatgttcat |
42636829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 42637218 - 42637080
Alignment:
| Q |
10 |
attattctcagataataacttacaaggaaagccttgtgtcgattgaaagagaagaaattcattaattt-ctttattttatcatgaacgtggttattaatt |
108 |
Q |
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| T |
42637218 |
attattctcagataataacttacaaggaaagccttgtgtcgattgaaagagaataaattcattaatttattttattttatcatgaacgtggttattaatt |
42637119 |
T |
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| Q |
109 |
tcttatgattattatgatttcattgcttatctcatttacagtattctg |
156 |
Q |
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| T |
42637118 |
tc---------ttatgatttcattgcatatctcatttacagtattctg |
42637080 |
T |
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