View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_low_12 (Length: 398)
Name: NF4689_low_12
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 8207097 - 8207460
Alignment:
| Q |
19 |
gaactgaccactcctttccaaaatcctgatttctccaaaggaatcaaaatatcaaccggatcaacaagctcatattcatctatttcttgaggagctgaca |
118 |
Q |
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| T |
8207097 |
gaactgaccactcctttccaaaatcctgatttctccaaaggaatcaaaatatcaaccggatcaacaagctcatattcatctatttcttgaggagctgaca |
8207196 |
T |
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| Q |
119 |
atgtaagagttgcaaacaggtaggtatgttagtgtcagagatnnnnnnncaaaccatatctgagaaaagaggccatgatccatctgcatcatcaattaca |
218 |
Q |
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| T |
8207197 |
atgtaagagttgcaaacaggtaggtatgttagtgtcagagataaaaaaacaaaccatatctgagaaaagaggccatgatccatctgcatcatcaattaca |
8207296 |
T |
|
| Q |
219 |
taccatcagacccagattcttccgcagggccaggacccacaacctcagatatagtttcctgttcaggttccttgtcttgctcagatctaaaaaatggtgg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8207297 |
taccatcagacccagattcttccgcagggccaggacccacaacctcagatatactttcctgttcaggttccttgtcttgctcagatctaaaaaatggtgg |
8207396 |
T |
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| Q |
319 |
aatacatattaagatggtattacactcatacggtgatttactattaattatacaccaacataat |
382 |
Q |
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| T |
8207397 |
aatacatattaagatggtattacactcatacggtgatttactattaattatacaccaacataat |
8207460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 9334007 - 9334056
Alignment:
| Q |
286 |
ttccttgtcttgctcagatctaaaaaatggtggaatacatattaagatgg |
335 |
Q |
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| T |
9334007 |
ttccttgtcttgctcacttctaagaaatggtggaatggatattaagatgg |
9334056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 9333931 - 9334011
Alignment:
| Q |
198 |
ccatctgcatcatcaattacataccatcagacccagattcttccgcagggccaggacccacaacctcagatatagtttcct |
278 |
Q |
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|||||| || |||||| ||||||||||| | | ||||| ||| ||||||||| | |||| |||| ||||||||||||||| |
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| T |
9333931 |
ccatctacaacatcaactacataccatctggcacagatactttagcagggccatgtcccataaccacagatatagtttcct |
9334011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 365
Target Start/End: Original strand, 42361831 - 42362182
Alignment:
| Q |
14 |
gagatgaactgaccactcctttccaaaatcctgatttctccaaaggaatcaaaatatcaaccggatcaacaagctcatattcatctatttcttgaggagc |
113 |
Q |
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|||| |||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42361831 |
gagaagaactgaccactccatcccaaaatcctgatttctccaaaggagtcaaaatatcaaccggatcaacaagctcgtattcatctatttcttgaggagc |
42361930 |
T |
|
| Q |
114 |
tgacaatgtaagagttgcaaacaggtaggtatgttagtgtcagagatnnnnnnncaaaccatatctgagaaaagaggccatgatccatctgcatcatcaa |
213 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| |||| ||||||| | |||||| |
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| T |
42361931 |
tgacaatataatagttgcaaacaggtaggtatgttagtgtcacagat-gaaaaacaaaccatatctgataaaagagagcatgctccatctaaaacatcaa |
42362029 |
T |
|
| Q |
214 |
-ttacataccatcagacccagattcttccgcagggccaggacccacaacctcagatatagtttcctgttcaggttccttgtcttgctcagatctaaaaaa |
312 |
Q |
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|||||||||||| ||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42362030 |
tttacataccatcggacccggattcttcagcagggccagcacccacaacctcagatatagtttcctgttcaggttccttgtcttgctcggatctaaaaaa |
42362129 |
T |
|
| Q |
313 |
tggtggaatacatattaagatggtattacactcatacggtgatttactattaa |
365 |
Q |
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|||||||||| ||||||||||||||||| |||||| ||| ||| || ||||| |
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| T |
42362130 |
tggtggaatatatattaagatggtattatcctcatatggttattaacaattaa |
42362182 |
T |
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