View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_low_17 (Length: 278)
Name: NF4689_low_17
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 2 - 262
Target Start/End: Complemental strand, 18066813 - 18066549
Alignment:
| Q |
2 |
cttgttttgctttccaacattcgggtccaggcacaaggtatgagcattttacttcttttctttttagataatcatcttcttcaagaaatgaagttctcac |
101 |
Q |
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| T |
18066813 |
cttgttttgctttccaacattcgggtccaggcacaaggtatgagcattttacttcttttatttttagataatcatcttcttcaataaatgaagttctcac |
18066714 |
T |
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| Q |
102 |
nnnnnnnnaatcaagtaaacatggtttcctgt------tttataccgtttttaatcaagtnnnnnnntgatagttaattttgtaagaggaaacaataatg |
195 |
Q |
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| T |
18066713 |
-tttttttaatcaagtaaacatggtttcctattttatatttataccgtttttaatcaagtaaaaaatt-atagttaattttgtaagaggaaacaataatg |
18066616 |
T |
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| Q |
196 |
ttttatgaatatagtcaaatgatttctaatttgagacaaactgttttttgcaacgtgacttataact |
262 |
Q |
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| T |
18066615 |
ttttatgaatatagtcaaatgatttctaattttaaacaaattattttttgcaacgtgacttataact |
18066549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 18130088 - 18129845
Alignment:
| Q |
2 |
cttgttttgctttccaacattcgggtccaggcacaaggtatgagcattttacttcttttctttttagataatcatcttcttcaagaaatgaagttctcac |
101 |
Q |
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| T |
18130088 |
cttgttttgctttccaacattcgggtccaggcacaaggtatgagcattttacttcttttatttttagataatcatcttcttcaataaatgaagttctcac |
18129989 |
T |
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| Q |
102 |
nnnnnnnnaatcaagtaaacatggtttcctgt------tttataccgtttttaatcaagtnnnnnnntgatagttaattttgtaagaggaaacaataatg |
195 |
Q |
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| T |
18129988 |
-tttttttaatcaagtaaacatggtttcctattttatatttataccgtttttaatcaagt-aaaaaatgatagttaattttgtaagaggaaac---aatg |
18129894 |
T |
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| Q |
196 |
ttttatgaatatagtcaaatgatttctaatttgagacaaactgtttttt |
244 |
Q |
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| T |
18129893 |
ttttatgaatatagtcaaatgatttctaattttaaacaaattatttttt |
18129845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 18105086 - 18104987
Alignment:
| Q |
2 |
cttgttttgctttccaacattcgggtccaggcacaaggtatgagcattttacttcttttctttttagataatcatcttcttcaagaaatgaagttctcac |
101 |
Q |
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| T |
18105086 |
cttgttttgctttccaacattcgggtccaggcacaaggtatgagcattttacttcttttatttttagataatcatcttcttcaagaaatgaagttctcac |
18104987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 18103301 - 18103221
Alignment:
| Q |
181 |
gaggaaacaataatgttttatgaatatagtcaaatgatttctaatttgagacaaactgttttttgcaacgtgacttataact |
262 |
Q |
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||||||| |||||||||| || | |||| ||||||||||| ||| |||||||||| | |||||||||||||||||||||||| |
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| T |
18103301 |
gaggaaaaaataatgtttcatta-tatactcaaatgatttttaagttgagacaaattattttttgcaacgtgacttataact |
18103221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 18111179 - 18111130
Alignment:
| Q |
52 |
acttcttttctttttagataatcatcttcttcaagaaatgaagttctcac |
101 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
18111179 |
acttcttttatttttagataatcatcttcttcaataaatgaagttctcac |
18111130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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