View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4689_low_19 (Length: 273)

Name: NF4689_low_19
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4689_low_19
NF4689_low_19
[»] chr1 (2 HSPs)
chr1 (17-258)||(34313011-34313251)
chr1 (59-140)||(34605426-34605507)
[»] chr7 (2 HSPs)
chr7 (35-140)||(31228438-31228543)
chr7 (38-134)||(23861998-23862093)
[»] chr2 (3 HSPs)
chr2 (37-143)||(8533778-8533884)
chr2 (72-135)||(34639606-34639669)
chr2 (29-140)||(16443009-16443120)
[»] chr4 (1 HSPs)
chr4 (55-134)||(7256763-7256842)
[»] chr6 (1 HSPs)
chr6 (39-83)||(17177462-17177506)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 34313251 - 34313011
Alignment:
Q  17 tcaatgtaatttaggagagaagattctctcttgtaattggagagtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacatt 116  Q
    ||||||||| ||||  ||| |||||||||  | |||||| |||||||||| |||||||||||||||||||||||| |||||||| ||| || ||||| ||    
T  34313251 tcaatgtaacttagtggagcagattctcttctataattgaagagtccaataaaatctaagtcatttattttccatcactccatgcagggcc-tcaacgtt 34313153  T
Q  117 gaagtaattgaatggtattaatgttcatatcactttcttcattaaaagtttcactagaagatatgcactcgtaacttagatactttgagcgtaaagatta 216  Q
    ||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34313152 gaactaattgaatggtactaatgttcatatcactttctccattaaaagtttcactagaagatatgcactcgtaacttagatactttgagcttaaagatta 34313053  T
Q  217 caatattataatttgtgacagttatttttcctattcaaaact 258  Q
    || |||| |||||||||||  |||||||||||||||||||||    
T  34313052 cagtattctaatttgtgacccttatttttcctattcaaaact 34313011  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 34605507 - 34605426
Alignment:
Q  59 agtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaatggtattaatgt 140  Q
    |||||||| | |||||||||| ||||||| || ||||||||  || | | |||| |||||||||||||||| ||||| ||||    
T  34605507 agtccaatgagatctaagtcacttatttttcactactccatacagaatcttcaatattgaagtaattgaatagtattgatgt 34605426  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 31228543 - 31228438
Alignment:
Q  35 gaagattctctcttgtaattggagagtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaatggtat 134  Q
    |||||||||||||||| ||||||||||||| | | ||||||| ||||||||||| | |||||||||| |  |||||||| ||||||||||||||||||||    
T  31228543 gaagattctctcttgtgattggagagtccagtgagatctaagccatttattttctactactccatgtggagccctcaacgttgaagtaattgaatggtat 31228444  T
Q  135 taatgt 140  Q
    | ||||    
T  31228443 tgatgt 31228438  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 23861998 - 23862093
Alignment:
Q  38 gattctctcttgtaattggagagtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaatggtat 134  Q
    ||||||||| ||| || |||||||||||| | ||||||| ||||||||||| | |||||||||| || || |||| |||||||||||||||||||||    
T  23861998 gattctctcctgtgatcggagagtccaatgagatctaagccatttattttctactactccatgt-gggccttcaatattgaagtaattgaatggtat 23862093  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 8533778 - 8533884
Alignment:
Q  37 agattctctcttgtaattggagagtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaatggtatta 136  Q
    |||||||||| ||||| | |||||| |||| | ||||||| ||||||||||||| |||||| ||  |  || ||||||||||||||||||||||||||||    
T  8533778 agattctctcatgtaacttgagagttcaatgagatctaagccatttattttccactactccgtgcggagccttcaacattgaagtaattgaatggtatta 8533877  T
Q  137 atgttca 143  Q
    |||||||    
T  8533878 atgttca 8533884  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 34639606 - 34639669
Alignment:
Q  72 ctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaatggtatt 135  Q
    ||||| |||||||||| || ||||||||||||| ||| ||||||||| ||||||||||||||||    
T  34639606 ctaagccatttatttttcactactccatgtagggcccacaacattgatgtaattgaatggtatt 34639669  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 16443120 - 16443009
Alignment:
Q  29 aggagagaagattctctcttgtaattggagagtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaa 128  Q
    ||||||| | |||||||| ||| | ||||||||||  | | ||||||  ||||||||||||| |||| |||||  || |||||||||||||| |||||||    
T  16443120 aggagagcaaattctctcatgtgactggagagtccggtgatatctaaaccatttattttccactacttcatgtgagatcctcaacattgaagcaattgaa 16443021  T
Q  129 tggtattaatgt 140  Q
    || |||| ||||    
T  16443020 tgatattgatgt 16443009  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 7256842 - 7256763
Alignment:
Q  55 ggagagtccaattaaatctaagtcatttattttccattactccatgtaggaccctcaacattgaagtaattgaatggtat 134  Q
    |||||||||| | | ||||||| ||||||||||||| |||| ||||     |||||||||||||||||||||||||||||    
T  7256842 ggagagtccagtgagatctaagccatttattttccactacttcatgggatgccctcaacattgaagtaattgaatggtat 7256763  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 17177462 - 17177506
Alignment:
Q  39 attctctcttgtaattggagagtccaattaaatctaagtcattta 83  Q
    |||||||| ||| | ||||||||||||| ||||||||||||||||    
T  17177462 attctctcctgtgactggagagtccaatgaaatctaagtcattta 17177506  T

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