View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_low_20 (Length: 270)
Name: NF4689_low_20
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 8718824 - 8719058
Alignment:
| Q |
20 |
gaagcaacattcagcctagtgatgagcatctaatgaaagcttccaagtcttgaacaacttggtcaacagcatggattatcatcttttttacctgtttcgt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8718824 |
gaagcaacattcagcctagtgatgagcatctaatgaaagcttccaagtcttgaacaacttggtcaacagcatggattatcatcttttttacctgtttcat |
8718923 |
T |
|
| Q |
120 |
aaataaacacaaatattaagcaaagttgtctacaattatgttctccttttcaactttcttagtttgaaattcacatcaaaagaaaggaagacaaaaaggg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8718924 |
aaataaacacaaatattaagcaaagttgtctacaattatgttctccttttcaactttcttagtttgaaattcacatcaaaagaaaggaagacaaaaa-gg |
8719022 |
T |
|
| Q |
220 |
aatattaaaatcacctcaagtttgtcttctcttgcc |
255 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
8719023 |
aatattaaaatcacctcaagtttgtcttctcttgcc |
8719058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 8672514 - 8672761
Alignment:
| Q |
20 |
gaagcaacattcagcctagtgatgagcatctaatgaaagcttccaagtcttgaacaacttggtcaacagcatggattatcatctttttt-acctgtttcg |
118 |
Q |
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||||||||||| || ||| |||||||||| |||||||||||||||| |||||||||||| | |||||| |||||||||||||||||||| | ||||||| |
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| T |
8672514 |
gaagcaacatttagtctaatgatgagcatttaatgaaagcttccaaatcttgaacaactagatcaacaacatggattatcatctttttttatctgtttca |
8672613 |
T |
|
| Q |
119 |
taaa------------taaacacaaatattaagcaaagttgtctacaattatgttctccttttcaactttcttagtttgaaattcacatcaaaagaaagg |
206 |
Q |
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| T |
8672614 |
tgaaaaatatcgcaattaaccccaaaaataaagcaaagttatctacaattatgttctccttttcaactttcttagtttgaaattcacatcaaaagaaagg |
8672713 |
T |
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| Q |
207 |
aagacaaaaagggaatattaaaatcacctcaagtttgtcttctcttgcc |
255 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8672714 |
aagacaaaaa-ggaatattaaaatcacctcaagtttgtcttctcttgcc |
8672761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 119 - 257
Target Start/End: Original strand, 8591082 - 8591222
Alignment:
| Q |
119 |
taaataaacacaaatattaagcaaa---gttgtctacaattatgttctccttttcaactttcttagtttgaaattcacatcaaaagaaaggaagacaaaa |
215 |
Q |
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|||||||||||||| | ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8591082 |
taaataaacacaaaaacaaagcaaattagttgtccacaattatgttctccttttcaactttcttagtttgaaattcacatcaaaagaaaggaaggcaaaa |
8591181 |
T |
|
| Q |
216 |
agggaatattaaaatcacctcaagtttgtcttctcttgccct |
257 |
Q |
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| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
8591182 |
a-ggattattaaaatcacctcaagtttgtcttctcttgccct |
8591222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 8590983 - 8591052
Alignment:
| Q |
46 |
catctaatgaaagcttccaagtcttgaacaacttggtcaacagcatggattatcatcttttttacctgtt |
115 |
Q |
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|||| ||||||||||||||| |||| ||||||||||||| |||||| ||||||||| ||||||| ||||| |
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| T |
8590983 |
catccaatgaaagcttccaattcttcaacaacttggtcagcagcatagattatcatattttttaactgtt |
8591052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 23440089 - 23439993
Alignment:
| Q |
21 |
aagcaacattcagcctagtgatgagcatctaatgaaagcttccaagtcttgaacaacttggtcaacagcatggattatcatcttttttacctgtttc |
117 |
Q |
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||||||| ||||| | |||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23440089 |
aagcaactttcagtccagtgatgagcatctaatgaaagcttcaaaatcttgaacaacttggtcaacaacatggattatcatcttttttacctgtttc |
23439993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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