View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_low_21 (Length: 267)
Name: NF4689_low_21
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 56436795 - 56436556
Alignment:
| Q |
20 |
agtacctgcgctgttcacaataacatcaggtggaccccccttcatctccataacagtgcgagccatctgttgaacgctgtcatcggagctgacgtcaaca |
119 |
Q |
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| T |
56436795 |
agtacctgcgctgttcacaataacatcaggtggaccccccttcatctccataacagtgcgagccatctgttgaacgctgtcattggagctgacgtcaaca |
56436696 |
T |
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| Q |
120 |
ttgaggaagagatgattatgattatttggaagtaaaagagattgaagagaatcaagcttatcctgagcacgagaacaacctataatggtgtgacctcgat |
219 |
Q |
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| T |
56436695 |
ttgaggaagagatgattatgattatttggaagtaaaagagattgaagagaatcaagcttatcctgagcacgagaacaacctataatggtgtgacctcgat |
56436596 |
T |
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| Q |
220 |
tcgccaattcaatagcaagagccctaccaattcctttgct |
259 |
Q |
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| T |
56436595 |
tcgccaattcaatagcaagagccctaccaattcctttgct |
56436556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 24890441 - 24890498
Alignment:
| Q |
187 |
cacgagaacaacctataatggtgtgacctcgattcgccaattcaatagcaagagccct |
244 |
Q |
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| T |
24890441 |
cacgagaacatccgataatggtgtggccgcgattagccaattcaattgcaagagccct |
24890498 |
T |
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