View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_low_22 (Length: 264)
Name: NF4689_low_22
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_low_22 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 264
Target Start/End: Complemental strand, 34747474 - 34747224
Alignment:
| Q |
14 |
agaggtggatatacctatggacatttatcacaaaactagattttgatgacatagggtattgttcttccaacgagataagaaaaacatgttttgtagactt |
113 |
Q |
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| T |
34747474 |
agaggtggatatacctatggacatttatcacaaaactagattttgatgacatagggtattgttcttccaacgagataagaaaagcatgctttgtagactt |
34747375 |
T |
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| Q |
114 |
tgtagatagggtactgcttcgactgaatagtgcacacatccgaagtttttctcttaaaatgtccgagaagtatgactcttcctatattaacaagtggata |
213 |
Q |
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| T |
34747374 |
tgtagatagggtactgcttcgactgaatagtgaacacatccgaagtttttctcttaaaatgtccgagaagtatgactcttcctatattaacaagtggata |
34747275 |
T |
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| Q |
214 |
tccatcgttataaatctgagagtcagaaagcttcgtgtctatttgcaaaat |
264 |
Q |
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| T |
34747274 |
tccatcgttataaatctgagagtcagaaagcttcgcgtctatttgcaaaat |
34747224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 34752104 - 34751937
Alignment:
| Q |
18 |
gtggatatacctatggacatttatcacaaaactagattttgatgacatagggtattgttcttccaacgagataagaaaaacatgttttgtagactttgta |
117 |
Q |
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| T |
34752104 |
gtggatatacctctggaaatttatcaccaaactagattttgacgacaagaaccatttttctttgaacaagataagaaaaaaaggctttgtagactttgtt |
34752005 |
T |
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| Q |
118 |
gatagggtactgcttcgactgaatagtgcacacatccgaagtttttctcttaaaatgtccgagaagta |
185 |
Q |
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| T |
34752004 |
gatagggtactgcttcatctgaatagtgcacacatccaaagtttttctcttaaaatgtcagaggagta |
34751937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 75 - 260
Target Start/End: Complemental strand, 34759850 - 34759665
Alignment:
| Q |
75 |
ttcttccaacgagataagaaaaacatgttttgtagactttgtagatagggtactgcttcgactgaatagtgcacacatccgaagtttttctcttaaaatg |
174 |
Q |
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| T |
34759850 |
ttcttcgaacaagataagaaaaaaatgctttgtagactttgtcgatagggtacttattgatctgaatagtgcgcagatcggaagtttttctctttcaatg |
34759751 |
T |
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| Q |
175 |
tccgagaagtatgactcttcctatattaacaagtggatatccatcgttataaatctgagagtcagaaagcttcgtgtctatttgca |
260 |
Q |
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| T |
34759750 |
ttagagaaatataattcttcttatattgaaaagtggatatctttggttataaatctgagagtcaaaaatctttgcgtctatttgca |
34759665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 34742847 - 34742791
Alignment:
| Q |
77 |
cttccaacgagataagaaaaacatgttttgtagactttgtagatagggtactgcttc |
133 |
Q |
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| T |
34742847 |
cttccaacaagataagaaaaaaatgctttgtagactttatagatagagtactgcttc |
34742791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 34751910 - 34751849
Alignment:
| Q |
197 |
atattaacaagtggatatccatcgttataaatctgagagtcagaaagcttcgtgtctatttg |
258 |
Q |
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| T |
34751910 |
atattaacaagtggatatctgtggttgtaaatctgagagtcagaaatctttgtatctatttg |
34751849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 34755807 - 34755761
Alignment:
| Q |
18 |
gtggatatacctatggacatttatcacaaaactagattttgatgaca |
64 |
Q |
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| T |
34755807 |
gtggatatacctctggaaatttatcaccaaactagattttgacgaca |
34755761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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