View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_low_24 (Length: 252)
Name: NF4689_low_24
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 33163802 - 33163557
Alignment:
| Q |
1 |
aaatggaaaaccttgaatatttaaatcgttggttggctcgaagcattcaagtaagggatcatcaggaatggatctgcaaaatggctggtaactccccctg |
100 |
Q |
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| T |
33163802 |
aaatggaaaaccttgaatatttaaatcgttggtcagctcgaagcattcaagtaagggatcatcaggaatggatctgcaaaatggctggtaactccccctg |
33163703 |
T |
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| Q |
101 |
cataattattcattggtaaatcaacacatcaaacgtgagaaaaggataaattacatgataagaaatttacctacggtgcaaaaagataacagcatatcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33163702 |
cataattattcattggtaaatcaacacatcaaacatgagaaaaggataaattacatgataagaaatttacctacggtgcaaaaagataacagcatatcca |
33163603 |
T |
|
| Q |
201 |
gccttcagaaagtacctgcaaaataaccaccaacacattcttctca |
246 |
Q |
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| T |
33163602 |
gccttcagaaagtacctgcaaaataaccaccaacacattcttctca |
33163557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 46162302 - 46162427
Alignment:
| Q |
6 |
gaaaaccttgaatatttaaatcgttggttggctcgaagcattcaagtaagggatcatcaggaatggatctgcaaaatggctggtaactccccctgcataa |
105 |
Q |
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||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| || |||| ||||||||||||||||||| |||| ||||||||||| |
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| T |
46162302 |
gaaaaccttgaatgtttaagtcgttggtgggctcgaagcattcaagtaagggatcctcgggaagggatctgcaaaatggctggaaacttcccctgcataa |
46162401 |
T |
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| Q |
106 |
ttattcattggtaaatcaacacatcaa |
132 |
Q |
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| T |
46162402 |
atattcattggt-aattaacacatcaa |
46162427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 46162488 - 46162558
Alignment:
| Q |
161 |
agaaatttacctacggtgcaaaaagataacagcatatccagccttcagaaagtacctgcaaaataaccacc |
231 |
Q |
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|||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46162488 |
agaaatttacctccggtacagaaagataacagcatatccagccttcagaaagtacctgcaaagtaaccacc |
46162558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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