View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_low_34 (Length: 249)
Name: NF4689_low_34
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 25522354 - 25522593
Alignment:
| Q |
1 |
cctttcatggaatactcaattgtcactaaacttcgaatccaatgtcaatcatagtgttttttaccttgaagaattggaactgtcttccgtaaatttgatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25522354 |
cctttcatggaatactcaattgtcactaaacttcgaatccaatgtcaatcatagtgttttttaccttgacgaattggaactgtcttccgtaaatttgatc |
25522453 |
T |
|
| Q |
101 |
aaatttcccaaattgcaaggaaaattcccgaatttggattatcttgatctttccaataacaaacttgatggaagaatgcccaattggttatatgnnnnnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25522454 |
aaatttcccaaattgcaaggaaaattcccgaatttggattatcttgatctttccaataacaaacttgatggaagaatgcccaattggttatatgaaaaaa |
25522553 |
T |
|
| Q |
201 |
nttcattgaagtttttgaacctctctcaaaactatttcat |
240 |
Q |
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| T |
25522554 |
attcattgaagtttttgaacctctctcaaaactatttcat |
25522593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 42124271 - 42124039
Alignment:
| Q |
1 |
cctttcatggaatactcaattgtcactaaacttcgaatccaatgtcaatcatagtgttttttaccttgaagaattggaactgtcttccgtaaatttgatc |
100 |
Q |
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|||||||||||||| |||||| || ||||| || ||||||||||||||| ||||| ||| | ||| ||| ||||||| ||||||| || ||||||||| |
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| T |
42124271 |
cctttcatggaatagtcaattatctctaaattttgaatccaatgtcaattatagtttttctagcctacaagtattggaattgtcttctgtcaatttgatc |
42124172 |
T |
|
| Q |
101 |
aaatttcccaaattgcaaggaaaattcccgaatttggattatcttgatctttccaataacaaacttgatggaagaatgcccaattggttatatgnnnnnn |
200 |
Q |
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||||| | || || |||||| ||||| ||||| | |||||| |||| ||||||||||| ||||||||||||||||||||||| || |
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| T |
42124171 |
aaattccataatttacaaggagaattcttagatttgatatcacttgatatttctgataacaaacttcatggaagaatgcccaattggttacttgaaaaaa |
42124072 |
T |
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| Q |
201 |
nttcattgaagtttttgaacctctctcaaaact |
233 |
Q |
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||||||| |||||||||||||||||||||| |
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| T |
42124071 |
attcattgctatttttgaacctctctcaaaact |
42124039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 41571462 - 41571533
Alignment:
| Q |
118 |
aggaaaattcccgaatttggattatcttgatctttccaataacaaacttgatggaagaatgcccaattggtt |
189 |
Q |
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|||||||||||| | |||| ||||||||| | ||||| ||||||||| |||||||| ||||||||||||| |
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| T |
41571462 |
aggaaaattccctagtttgagatatcttgatttgtccaacaacaaactttatggaagagtgcccaattggtt |
41571533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 11118910 - 11118722
Alignment:
| Q |
1 |
cctttcatggaatactcaattgtcactaaacttcgaatccaatgtcaatcatagtgttttttaccttgaagaattggaactgtcttccgtaaatttgatc |
100 |
Q |
| |
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||||||| |||||| ||| ||||||||||| |||||||||||||||| | ||||| || | |||| || | | || | ||||| || || |||||| |
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| T |
11118910 |
cctttcaaggaatagtcagttgtcactaaaattcgaatccaatgtcacttatagttttactaacctacaaatactcaaattatcttctgtcaacttgatc |
11118811 |
T |
|
| Q |
101 |
aaatttcccaaattgcaaggaaaattcccgaatttggattatcttgatctttccaataacaaacttgatggaagaatgcccaattggtt |
189 |
Q |
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|||||| ||| || |||||| |||| || | |||| |||| ||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
11118810 |
gaatttcacaacttacaaggagaatttccaagtttgtcacatctggatctttccaaaaacaaacttaatggaagaatgcccaattggtt |
11118722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 32681374 - 32681419
Alignment:
| Q |
2 |
ctttcatggaatactcaattgtcactaaacttcgaatccaatgtca |
47 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
32681374 |
ctttcatggaatagtcaattgtcactaaactttgaatccaatgtca |
32681419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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