View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4689_low_38 (Length: 242)
Name: NF4689_low_38
Description: NF4689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4689_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3749675 - 3749453
Alignment:
| Q |
1 |
ttgtgtttgagtgttgtggacagaaaggaataatatgttcgataacaataaagctaaatttattccgaagctcatggataaagtaaaattttccatctat |
100 |
Q |
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| T |
3749675 |
ttgtgtttaagtgttgtggacagaaaggaataagatgttctttaacaataaagctaaatctattcggaagctcatggataaagtaaaattttctatctat |
3749576 |
T |
|
| Q |
101 |
tggtggctgaaagttgaaaatgttaattttctttttgatcattttatgtgttaaaacaaccctttgcttgtttgggtcttgactgaatttgtctgttttt |
200 |
Q |
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||||||||||||||| |||||||||||||| ||||| ||||||||| |||| |||||||||||| ||| |||||||||||||||||||||||||||| | |
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| T |
3749575 |
tggtggctgaaagttcaaaatgttaatttttcttttggtcattttatatgttgaaacaaccctttacttatttgggtcttgactgaatttgtctgtttct |
3749476 |
T |
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| Q |
201 |
tcctttcagttccgtgatgtaaa |
223 |
Q |
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||||| |||||||||||||||| |
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| T |
3749475 |
tccttctagttccgtgatgtaaa |
3749453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 11141142 - 11141241
Alignment:
| Q |
127 |
ttttctttttgatcattttatgtgt---taaaacaaccctttgcttgtttgggtcttgactgaatttgtctgttttttcctttcagttccgtgatgtaaa |
223 |
Q |
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| T |
11141142 |
ttttatttttggtcattttatgtgtggttgaaacaaccctttgcttgtttgggtcttaactggattgttctgttttttcctttcggttttgtgatgtaaa |
11141241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 11139964 - 11140047
Alignment:
| Q |
1 |
ttgtgtttgagtgttgtggacagaaaggaataatatgttcgataacaataaagctaaatttattccgaagctcatggataaagt |
84 |
Q |
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| T |
11139964 |
ttgtgttttagtgttgtggacagagaggaataacatgctttttaacaataaaactaaatctattccgaagctgatggataaagt |
11140047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 48 - 207
Target Start/End: Original strand, 2947673 - 2947833
Alignment:
| Q |
48 |
ataaagctaaatttattccgaagctcatggataaagtaaaattttccatctattggtggctgaaagttgaaaatgttaattttctttttgatcattttat |
147 |
Q |
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|||||||||||| ||||| |||||| ||||||||||| ||| |||| | ||||||||||||||||| | ||||||||||||||| ||||| |||||| || |
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| T |
2947673 |
ataaagctaaatctattctgaagctgatggataaagtgaaagtttctacctattggtggctgaaagctcaaaatgttaattttccttttggtcatttgat |
2947772 |
T |
|
| Q |
148 |
gt-gttaaaacaaccctttgcttgtttgggtcttgactgaatttgtctgttttttcctttc |
207 |
Q |
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| T |
2947773 |
gtggttgaaacaaccctttgcttgtttgggtcttgactgaattgttatgttttatcctttc |
2947833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 95 - 207
Target Start/End: Complemental strand, 3444696 - 3444583
Alignment:
| Q |
95 |
atctattggtggctgaaagttgaaaatgttaattttctttttgatcattttatgtg-ttaaaacaaccctttgcttgtttgggtcttgactgaatttgtc |
193 |
Q |
| |
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||||||| |||| ||||| | ||||| |||||||| ||||| |||||||||||| |||||||||| ||||||||||||| ||||||| ||||| |||| |
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| T |
3444696 |
atctattagtggttgaaaactcaaaattttaatttttcttttggtcattttatgtggttaaaacaactctttgcttgtttgagtcttgattgaatctgtc |
3444597 |
T |
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| Q |
194 |
tgttttttcctttc |
207 |
Q |
| |
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| |||||||||||| |
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| T |
3444596 |
tattttttcctttc |
3444583 |
T |
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